Wall clock time and date at job start Tue Mar 31 2020 11:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00107 * 2 1 4 4 H 1.48503 * 109.46862 * 269.99913 * 3 2 1 5 5 H 1.48498 * 109.47130 * 30.00350 * 3 2 1 6 6 H 1.48498 * 109.47152 * 150.00497 * 3 2 1 7 7 C 1.37881 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00211 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47421 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00087 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00365 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99904 * 179.97438 * 11 10 9 14 14 C 1.52998 * 109.47171 * 179.97438 * 13 11 10 15 15 O 1.42896 * 109.47274 * 179.97438 * 14 13 11 16 16 C 1.35916 * 117.00381 * 179.97438 * 15 14 13 17 17 C 1.38749 * 120.03451 * 0.02562 * 16 15 14 18 18 C 1.38135 * 119.98189 * 179.97438 * 17 16 15 19 19 C 1.38359 * 120.05814 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 119.96592 * 180.27823 * 19 18 17 21 21 C 1.38465 * 120.06991 * 0.02562 * 19 18 17 22 22 Cl 1.73599 * 119.98882 * 180.02562 * 21 19 18 23 23 C 1.38272 * 120.01599 * 359.97438 * 21 19 18 24 24 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47356 * 59.99717 * 9 7 2 26 26 H 1.09007 * 109.47122 * 299.99789 * 9 7 2 27 27 H 0.97001 * 119.99434 * 359.97438 * 10 9 7 28 28 H 1.08994 * 109.47327 * 59.99404 * 13 11 10 29 29 H 1.09001 * 109.46687 * 299.99607 * 13 11 10 30 30 H 1.09002 * 109.47257 * 59.99818 * 14 13 11 31 31 H 1.08999 * 109.47435 * 300.00128 * 14 13 11 32 32 H 1.08005 * 120.01261 * 0.02562 * 17 16 15 33 33 H 1.08004 * 119.97447 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.02305 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7537 -4.8834 -0.0019 12 8 0.5613 -5.1050 -0.0019 13 6 2.7330 -6.0288 -0.0022 14 6 1.9680 -7.3538 -0.0020 15 8 2.8965 -8.4400 -0.0029 16 6 2.3770 -9.6960 -0.0023 17 6 1.0016 -9.8786 -0.0014 18 6 0.4748 -11.1556 -0.0013 19 6 1.3176 -12.2529 -0.0026 20 17 0.6530 -13.8566 -0.0098 21 6 2.6905 -12.0732 -0.0036 22 17 3.7460 -13.4515 -0.0059 23 6 3.2210 -10.7964 -0.0036 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 3.1567 -3.4355 -0.0010 28 1 3.3597 -5.9714 0.8877 29 1 3.3596 -5.9708 -0.8922 30 1 1.3410 -7.4115 -0.8917 31 1 1.3416 -7.4116 0.8882 32 1 0.3430 -9.0226 -0.0015 33 1 -0.5958 -11.2976 -0.0010 34 1 4.2919 -10.6561 -0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353334054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:49 Heat of formation + Delta-G solvation = -77.537598 kcal Electronic energy + Delta-G solvation = -20161.649258 eV Core-core repulsion = 16532.144287 eV Total energy + Delta-G solvation = -3629.504971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62247 -39.08718 -38.16688 -36.87403 -36.47012 -34.35172 -32.54707 -32.13594 -31.26673 -29.77553 -27.44780 -24.87498 -23.37075 -22.67290 -21.79111 -19.79780 -18.87362 -17.24055 -16.81542 -16.68382 -16.54668 -15.67195 -15.44576 -15.14943 -14.89068 -14.34684 -14.21922 -14.13832 -14.01276 -12.91763 -12.90124 -12.76685 -12.29067 -12.22901 -12.04110 -11.86799 -11.62974 -11.41438 -11.29867 -11.13688 -11.03483 -10.93846 -10.73651 -10.38447 -9.48086 -9.37715 -9.28587 -8.81882 -8.55453 -8.02363 -6.23443 -4.30876 0.57528 0.73208 1.45897 1.81659 2.77905 3.05544 3.16412 3.20115 3.26572 3.28737 4.07513 4.20660 4.32514 4.51242 4.59814 4.74934 4.83632 4.87500 5.12964 5.18955 5.25337 5.31938 5.53298 5.61603 5.66676 5.67296 5.81131 5.96890 6.95981 7.19163 7.27925 7.41420 7.56976 7.88641 8.47563 8.66823 8.93436 9.35832 10.86664 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.043113 B = 0.001860 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.306402 B =15047.943342 C =15671.498499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.707 5.707 11 C 0.503 3.497 12 O -0.559 6.559 13 C -0.141 4.141 14 C 0.073 3.927 15 O -0.309 6.309 16 C 0.158 3.842 17 C -0.192 4.192 18 C -0.055 4.055 19 C -0.074 4.074 20 Cl -0.055 7.055 21 C 0.007 3.993 22 Cl -0.044 7.044 23 C -0.138 4.138 24 H 0.267 0.733 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.393 0.607 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.193 -25.132 -0.007 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.355 5.355 11 C 0.287 3.713 12 O -0.440 6.440 13 C -0.182 4.182 14 C -0.002 4.002 15 O -0.222 6.222 16 C 0.111 3.889 17 C -0.211 4.211 18 C -0.074 4.074 19 C -0.102 4.102 20 Cl -0.026 7.026 21 C -0.020 4.020 22 Cl -0.015 7.015 23 C -0.158 4.158 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.226 0.774 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.400 -25.308 -0.004 25.877 hybrid contribution 0.699 0.873 -0.009 1.118 sum 6.099 -24.435 -0.013 25.185 Atomic orbital electron populations 1.69968 1.06125 1.27420 1.48695 1.24961 0.94940 0.99530 0.94603 0.86394 0.79613 0.82522 0.78266 1.20418 1.20970 1.19717 1.21214 0.93310 0.90385 1.53491 0.91810 1.19153 0.88271 0.81874 0.97875 1.46455 1.11420 1.05968 1.71681 1.20069 0.89007 0.84372 0.77809 1.90682 1.16838 1.84976 1.51466 1.21513 0.99293 0.91641 1.05723 1.22618 0.90870 0.83219 1.03466 1.86017 1.36822 1.11806 1.87573 1.18797 0.91370 0.84937 0.93782 1.21513 0.94389 0.98593 1.06578 1.20851 1.00241 0.89903 0.96392 1.20603 0.91333 0.87683 1.10558 1.98379 1.85429 1.21723 1.97039 1.20363 0.89293 0.89111 1.03268 1.98397 1.65195 1.41325 1.96589 1.20157 1.01066 0.87850 1.06692 0.92371 0.95390 0.95385 0.77405 0.88076 0.88070 0.90546 0.90537 0.83251 0.83593 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.55 -14.33 9.28 -34.44 -0.32 -14.65 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.25 6.31 5.43 -5.19 -0.03 6.28 16 10 N -0.71 -13.81 5.55 -61.47 -0.34 -14.15 16 11 C 0.50 9.00 7.83 -10.99 -0.09 8.91 16 12 O -0.56 -12.18 15.98 5.55 0.09 -12.09 16 13 C -0.14 -1.72 6.07 -27.88 -0.17 -1.89 16 14 C 0.07 0.85 4.03 37.16 0.15 1.00 16 15 O -0.31 -3.43 10.14 -19.48 -0.20 -3.63 16 16 C 0.16 1.64 6.69 -39.23 -0.26 1.38 16 17 C -0.19 -1.83 9.04 -39.43 -0.36 -2.18 16 18 C -0.05 -0.48 9.82 -39.57 -0.39 -0.87 16 19 C -0.07 -0.70 6.32 -39.45 -0.25 -0.95 16 20 Cl -0.05 -0.49 27.95 -51.86 -1.45 -1.94 16 21 C 0.01 0.07 6.32 -39.49 -0.25 -0.18 16 22 Cl -0.04 -0.40 27.95 -51.86 -1.45 -1.85 16 23 C -0.14 -1.32 9.77 -39.41 -0.38 -1.70 16 24 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.39 6.47 8.32 -40.82 -0.34 6.13 16 28 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.90 7.62 -51.93 -0.40 0.51 16 31 H 0.08 0.90 7.62 -51.93 -0.40 0.51 16 32 H 0.15 1.34 6.30 -52.48 -0.33 1.01 16 33 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -30.44 332.21 -8.60 -39.04 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.53 Total: 2.23 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.44 Total: -3.23 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.40 Total: -38.87 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.11 Total: -15.72 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -2.90 Total: -3.79 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.44 -8.60 -39.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353334054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.493 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds