Wall clock time and date at job start Tue Mar 31 2020 11:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00107 * 2 1 4 4 H 1.48503 * 109.46862 * 269.99913 * 3 2 1 5 5 H 1.48498 * 109.47130 * 30.00350 * 3 2 1 6 6 H 1.48498 * 109.47152 * 150.00497 * 3 2 1 7 7 C 1.37881 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00211 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47421 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00087 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00365 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99904 * 179.97438 * 11 10 9 14 14 C 1.52998 * 109.47171 * 179.97438 * 13 11 10 15 15 O 1.42896 * 109.47274 * 179.97438 * 14 13 11 16 16 C 1.35916 * 117.00381 * 179.97438 * 15 14 13 17 17 C 1.38749 * 120.03451 * 0.02562 * 16 15 14 18 18 C 1.38135 * 119.98189 * 179.97438 * 17 16 15 19 19 C 1.38359 * 120.05814 * 359.97438 * 18 17 16 20 20 Cl 1.73601 * 119.96592 * 180.27823 * 19 18 17 21 21 C 1.38465 * 120.06991 * 0.02562 * 19 18 17 22 22 Cl 1.73599 * 119.98882 * 180.02562 * 21 19 18 23 23 C 1.38272 * 120.01599 * 359.97438 * 21 19 18 24 24 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47356 * 59.99717 * 9 7 2 26 26 H 1.09007 * 109.47122 * 299.99789 * 9 7 2 27 27 H 0.97001 * 119.99434 * 359.97438 * 10 9 7 28 28 H 1.08994 * 109.47327 * 59.99404 * 13 11 10 29 29 H 1.09001 * 109.46687 * 299.99607 * 13 11 10 30 30 H 1.09002 * 109.47257 * 59.99818 * 14 13 11 31 31 H 1.08999 * 109.47435 * 300.00128 * 14 13 11 32 32 H 1.08005 * 120.01261 * 0.02562 * 17 16 15 33 33 H 1.08004 * 119.97447 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.02305 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7537 -4.8834 -0.0019 12 8 0.5613 -5.1050 -0.0019 13 6 2.7330 -6.0288 -0.0022 14 6 1.9680 -7.3538 -0.0020 15 8 2.8965 -8.4400 -0.0029 16 6 2.3770 -9.6960 -0.0023 17 6 1.0016 -9.8786 -0.0014 18 6 0.4748 -11.1556 -0.0013 19 6 1.3176 -12.2529 -0.0026 20 17 0.6530 -13.8566 -0.0098 21 6 2.6905 -12.0732 -0.0036 22 17 3.7460 -13.4515 -0.0059 23 6 3.2210 -10.7964 -0.0036 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 3.1567 -3.4355 -0.0010 28 1 3.3597 -5.9714 0.8877 29 1 3.3596 -5.9708 -0.8922 30 1 1.3410 -7.4115 -0.8917 31 1 1.3416 -7.4116 0.8882 32 1 0.3430 -9.0226 -0.0015 33 1 -0.5958 -11.2976 -0.0010 34 1 4.2919 -10.6561 -0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353334054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:48 Heat of formation + Delta-G solvation = -96.408707 kcal Electronic energy + Delta-G solvation = -20162.467571 eV Core-core repulsion = 16532.144287 eV Total energy + Delta-G solvation = -3630.323284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44007 -40.52045 -39.01668 -37.58914 -37.21583 -36.17968 -34.37944 -33.24417 -32.05533 -30.61352 -29.28039 -26.08856 -24.48236 -23.90984 -22.85221 -21.31369 -19.75588 -18.78015 -17.85036 -17.51902 -17.49743 -17.17796 -16.95858 -16.26173 -16.16886 -15.84808 -15.05746 -15.05399 -14.86081 -14.46686 -14.25582 -13.97856 -13.57774 -13.42969 -13.16991 -12.93772 -12.87761 -12.71401 -12.41963 -12.32383 -12.22513 -12.02966 -11.87277 -11.56354 -11.48415 -10.86954 -10.80339 -10.09499 -9.84702 -9.32038 -8.29196 -6.45297 -0.16524 0.00205 0.73291 1.08074 1.44362 1.46055 1.57217 1.71324 1.82886 2.31788 2.36436 2.79698 3.06118 3.49839 3.66839 3.76926 3.94932 3.95053 4.03784 4.15915 4.38226 4.56517 4.64101 4.73954 4.75447 4.92953 5.05988 5.12515 5.22473 5.24999 5.48045 5.67466 5.85087 6.13141 6.65793 6.86349 7.23603 7.45310 8.82734 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.043113 B = 0.001860 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.306402 B =15047.943342 C =15671.498499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.983 3.017 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.265 3.735 10 N -0.705 5.705 11 C 0.502 3.498 12 O -0.602 6.602 13 C -0.124 4.124 14 C 0.077 3.923 15 O -0.309 6.309 16 C 0.144 3.856 17 C -0.195 4.195 18 C -0.054 4.054 19 C -0.080 4.080 20 Cl -0.052 7.052 21 C 0.000 4.000 22 Cl -0.040 7.040 23 C -0.137 4.137 24 H 0.268 0.732 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.411 0.589 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 -25.467 0.000 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.142 3.858 10 N -0.355 5.355 11 C 0.289 3.711 12 O -0.485 6.485 13 C -0.164 4.164 14 C 0.002 3.998 15 O -0.222 6.222 16 C 0.097 3.903 17 C -0.214 4.214 18 C -0.073 4.073 19 C -0.108 4.108 20 Cl -0.023 7.023 21 C -0.028 4.028 22 Cl -0.011 7.011 23 C -0.156 4.156 24 H 0.077 0.923 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.247 0.753 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.182 0.818 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.605 -25.684 0.002 26.786 hybrid contribution -0.016 0.845 -0.012 0.845 sum 7.589 -24.839 -0.010 25.973 Atomic orbital electron populations 1.70127 1.08207 1.28538 1.50004 1.26049 0.95776 1.03874 0.93953 0.85177 0.78521 0.77103 0.78549 1.19684 1.21119 1.17914 1.21636 0.94386 0.90611 1.52772 0.89717 1.18567 0.88704 0.84237 0.94310 1.46174 1.11448 1.05466 1.72370 1.21033 0.89417 0.84939 0.75704 1.90665 1.19346 1.85581 1.52882 1.21382 0.97792 0.88892 1.08311 1.22470 0.90802 0.83413 1.03139 1.85977 1.36412 1.11878 1.87939 1.18941 0.91852 0.84764 0.94733 1.21610 0.94286 0.99041 1.06448 1.21055 1.01182 0.89396 0.95650 1.20756 0.91529 0.88037 1.10470 1.98380 1.85370 1.21514 1.97013 1.20460 0.89504 0.89364 1.03430 1.98398 1.65050 1.41062 1.96571 1.20276 1.01660 0.87539 1.06148 0.92279 0.99225 0.99217 0.75283 0.85354 0.85346 0.91036 0.91024 0.83018 0.81807 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.98 41.24 29.54 68.60 2.03 43.27 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.56 -29.18 9.28 25.60 0.24 -28.94 16 8 H 0.08 3.99 7.60 -2.91 -0.02 3.96 16 9 C 0.26 13.87 5.43 85.63 0.46 14.33 16 10 N -0.70 -27.31 5.55 -466.78 -2.59 -29.90 16 11 C 0.50 17.70 7.83 87.66 0.69 18.39 16 12 O -0.60 -26.83 15.98 -3.05 -0.05 -26.88 16 13 C -0.12 -2.72 6.07 29.85 0.18 -2.54 16 14 C 0.08 1.68 4.03 71.98 0.29 1.97 16 15 O -0.31 -6.25 10.14 -92.61 -0.94 -7.19 16 16 C 0.14 2.78 6.69 22.50 0.15 2.93 16 17 C -0.19 -3.51 9.04 22.37 0.20 -3.31 16 18 C -0.05 -0.88 9.82 22.27 0.22 -0.66 16 19 C -0.08 -1.42 6.32 22.35 0.14 -1.28 16 20 Cl -0.05 -0.87 27.95 -2.72 -0.08 -0.95 16 21 C 0.00 0.00 6.32 22.33 0.14 0.14 16 22 Cl -0.04 -0.67 27.95 -2.72 -0.08 -0.74 16 23 C -0.14 -2.41 9.77 22.38 0.22 -2.19 16 24 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 25 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 27 H 0.41 12.81 8.32 -92.71 -0.77 12.03 16 28 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 1.63 7.62 -2.39 -0.02 1.61 16 31 H 0.07 1.63 7.62 -2.39 -0.02 1.61 16 32 H 0.15 2.62 6.30 -2.91 -0.02 2.61 16 33 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 34 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -67.33 332.21 2.35 -64.97 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.38 Total: 12.51 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 3.39 Total: -0.53 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.30 Total: -84.47 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.99 Total: -34.06 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.15 Total: -1.69 kcal Total: -67.33 2.35 -64.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353334054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.435 kcal (2) G-P(sol) polarization free energy of solvation -67.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds