Wall clock time and date at job start Tue Mar 31 2020 10:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36845 * 120.00195 * 2 1 4 4 H 1.07998 * 119.99898 * 223.33758 * 3 2 1 5 5 C 1.39014 * 120.00103 * 43.33354 * 3 2 1 6 6 N 1.31393 * 119.99869 * 8.06989 * 5 3 2 7 7 Si 1.86798 * 120.00069 * 188.06719 * 5 3 2 8 8 H 1.48494 * 109.47014 * 90.00110 * 7 5 3 9 9 H 1.48493 * 109.47165 * 210.00232 * 7 5 3 10 10 H 1.48503 * 109.47179 * 330.00440 * 7 5 3 11 11 C 1.34779 * 119.99821 * 180.02562 * 2 1 3 12 12 O 1.21773 * 119.99671 * 5.69756 * 11 2 1 13 13 C 1.46392 * 120.00220 * 185.70041 * 11 2 1 14 14 C 1.35378 * 125.05220 * 186.65882 * 13 11 2 15 15 C 1.40303 * 115.37463 * 180.18225 * 14 13 11 16 16 S 1.76997 * 136.05979 * 179.87787 * 15 14 13 17 17 C 1.75387 * 92.88278 * 179.66991 * 16 15 14 18 18 C 1.40156 * 130.05849 * 180.02562 * 17 16 15 19 19 C 1.37534 * 120.09751 * 180.02562 * 18 17 16 20 20 C 1.38783 * 120.27686 * 359.96302 * 19 18 17 21 21 C 1.36251 * 120.44236 * 0.02562 * 20 19 18 22 22 C 1.38799 * 110.35928 * 0.02562 * 17 16 15 23 23 C 1.36323 * 113.34112 * 359.56514 * 15 14 13 24 24 S 1.75315 * 125.05004 * 6.38794 * 13 11 2 25 25 H 1.08999 * 109.46680 * 266.12254 * 1 2 3 26 26 H 1.09002 * 109.46918 * 26.11877 * 1 2 3 27 27 H 1.08997 * 109.47605 * 146.12299 * 1 2 3 28 28 H 0.96997 * 120.00182 * 179.97438 * 6 5 3 29 29 H 1.07996 * 122.31043 * 359.77139 * 14 13 11 30 30 H 1.08000 * 119.95047 * 0.02562 * 18 17 16 31 31 H 1.07996 * 119.85941 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.77216 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.87452 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1493 1.1851 0.0000 4 1 3.0084 1.3126 -0.6419 5 6 1.7385 2.2249 0.8262 6 7 0.7966 2.0214 1.7194 7 14 2.5257 3.9114 0.6665 8 1 1.7635 4.7223 -0.3166 9 1 2.5110 4.5915 1.9865 10 1 3.9284 3.7611 0.2026 11 6 2.1389 -1.1672 -0.0005 12 8 1.5345 -2.2191 -0.1057 13 6 3.5974 -1.1705 0.1254 14 6 4.3854 -2.2652 0.0092 15 6 5.7601 -2.0364 0.1711 16 16 7.2291 -3.0232 0.1369 17 6 8.2680 -1.6457 0.4517 18 6 9.6618 -1.5784 0.5826 19 6 10.2736 -0.3723 0.8331 20 6 9.5163 0.7840 0.9569 21 6 8.1603 0.7378 0.8324 22 6 7.5115 -0.4886 0.5759 23 6 6.0655 -0.7298 0.4115 24 16 4.5838 0.2437 0.4424 25 1 -0.3633 -0.0695 1.0253 26 1 -0.3633 0.9228 -0.4524 27 1 -0.3634 -0.8532 -0.5728 28 1 0.5102 2.7468 2.2961 29 1 3.9829 -3.2479 -0.1876 30 1 10.2563 -2.4749 0.4867 31 1 11.3478 -0.3250 0.9337 32 1 10.0051 1.7267 1.1540 33 1 7.5798 1.6433 0.9308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354138763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:04 Heat of formation + Delta-G solvation = 29.985597 kcal Electronic energy + Delta-G solvation = -20748.225211 eV Core-core repulsion = 17570.612223 eV Total energy + Delta-G solvation = -3177.612989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.028 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.36645 -38.70952 -36.66418 -34.94797 -32.40099 -31.88920 -30.93447 -28.51945 -26.53234 -25.25936 -23.71513 -22.99802 -21.72835 -20.34923 -18.97195 -18.23106 -17.21899 -16.55204 -15.74160 -15.30426 -15.11722 -14.67716 -14.47160 -14.30664 -14.25249 -13.74628 -13.62875 -12.98238 -12.59645 -12.44206 -12.30172 -11.80898 -11.57165 -11.51819 -11.44142 -11.33171 -11.17876 -10.98770 -10.56924 -10.51279 -10.09296 -9.97739 -9.35296 -9.31976 -8.87669 -8.44436 -7.88509 -7.60436 -7.05534 -6.76696 -4.55954 0.60273 1.27389 1.55561 1.81144 2.07044 2.34374 2.75147 2.85443 2.99217 3.00820 3.02822 3.77076 3.77960 4.14283 4.54965 4.71158 4.76117 4.91857 4.94057 5.34447 5.37854 5.65437 5.68955 5.86515 5.96634 6.12225 6.31243 6.33290 6.45108 6.48583 6.67909 6.69443 6.72782 6.87982 6.94810 7.05470 7.56099 7.95844 8.63763 9.13644 9.58101 10.22460 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.005100 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.318930 B = 5489.006613 C = 7104.718038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.434 5.434 3 C -0.346 4.346 4 H 0.104 0.896 5 C 0.064 3.936 6 N -0.833 5.833 7 Si 0.909 3.091 8 H -0.268 1.268 9 H -0.274 1.274 10 H -0.256 1.256 11 C 0.532 3.468 12 O -0.592 6.592 13 C -0.180 4.180 14 C -0.071 4.071 15 C -0.148 4.148 16 S 0.089 5.911 17 C -0.130 4.130 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.121 4.121 21 C -0.084 4.084 22 C -0.016 4.016 23 C -0.236 4.236 24 S 0.286 5.714 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.280 0.720 29 H 0.143 0.857 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.424 0.326 -0.964 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.151 5.151 3 C -0.482 4.482 4 H 0.120 0.880 5 C -0.150 4.150 6 N -0.464 5.464 7 Si 0.733 3.267 8 H -0.193 1.193 9 H -0.199 1.199 10 H -0.179 1.179 11 C 0.321 3.679 12 O -0.479 6.479 13 C -0.303 4.303 14 C -0.107 4.107 15 C -0.273 4.273 16 S 0.350 5.650 17 C -0.247 4.247 18 C -0.108 4.108 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.105 4.105 22 C -0.026 4.026 23 C -0.359 4.359 24 S 0.561 5.439 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.161 0.839 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.887 -0.086 -0.838 12.914 hybrid contribution 0.286 0.815 0.093 0.868 sum 13.172 0.729 -0.744 13.214 Atomic orbital electron populations 1.21377 0.80430 0.99801 1.01330 1.43223 1.05676 1.04109 1.62135 1.19483 1.13369 0.90857 1.24478 0.87957 1.25673 0.95682 1.00622 0.93009 1.69887 1.26157 1.33775 1.16600 0.86153 0.80697 0.81104 0.78741 1.19266 1.19891 1.17932 1.17168 0.84481 0.84367 0.81902 1.90691 1.68815 1.31512 1.56911 1.24124 0.98411 0.97087 1.10667 1.19665 0.88443 0.99661 1.02924 1.22039 0.97322 0.95744 1.12197 1.83662 0.94120 1.07460 1.79713 1.22408 0.97547 0.97088 1.07667 1.20500 0.90850 0.98427 1.01031 1.20958 0.99707 0.92138 1.00519 1.20668 0.93576 0.98579 1.01333 1.20842 0.94662 0.96176 0.98782 1.18475 0.89386 0.93498 1.01250 1.25983 0.99726 1.00202 1.09986 1.85716 0.87791 1.04601 1.65786 0.92393 0.92164 0.93714 0.90965 0.83947 0.85677 0.85540 0.85634 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.61 8.90 59.85 0.53 3.14 16 2 N -0.43 -10.71 2.89 -123.79 -0.36 -11.07 16 3 C -0.35 -8.15 6.64 -15.03 -0.10 -8.25 16 4 H 0.10 2.33 5.67 -36.28 -0.21 2.13 16 5 C 0.06 1.46 5.22 -17.45 -0.09 1.37 16 6 N -0.83 -20.13 11.89 55.50 0.66 -19.47 16 7 Si 0.91 17.47 29.56 -169.99 -5.03 12.45 16 8 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 9 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 10 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 11 C 0.53 13.37 7.58 -12.98 -0.10 13.27 16 12 O -0.59 -15.97 16.40 5.12 0.08 -15.89 16 13 C -0.18 -4.05 6.20 -37.32 -0.23 -4.28 16 14 C -0.07 -1.47 9.91 -39.83 -0.39 -1.87 16 15 C -0.15 -2.82 6.80 -39.50 -0.27 -3.09 16 16 S 0.09 1.42 23.23 -107.50 -2.50 -1.08 16 17 C -0.13 -2.02 6.41 -38.65 -0.25 -2.27 16 18 C -0.08 -1.05 10.09 -39.12 -0.39 -1.45 16 19 C -0.11 -1.22 10.02 -39.64 -0.40 -1.62 16 20 C -0.12 -1.40 9.96 -40.10 -0.40 -1.79 16 21 C -0.08 -1.20 10.04 -39.21 -0.39 -1.59 16 22 C -0.02 -0.28 6.02 -104.83 -0.63 -0.91 16 23 C -0.24 -4.50 7.11 -36.49 -0.26 -4.76 16 24 S 0.29 5.79 18.69 -107.50 -2.01 3.78 16 25 H 0.06 1.38 7.65 -51.93 -0.40 0.98 16 26 H 0.06 1.32 7.91 -51.93 -0.41 0.91 16 27 H 0.04 0.98 7.46 -51.93 -0.39 0.60 16 28 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 29 H 0.14 2.84 8.01 -52.49 -0.42 2.42 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -27.77 312.15 -10.47 -38.23 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -2.65 Total: 2.44 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -3.38 Total: -14.10 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.30 Total: -30.54 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.89 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.45 kcal Atomic # 16 Polarization: 7.21 SS G_CDS: -4.51 Total: 2.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.77 -10.47 -38.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354138763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.220 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds