Wall clock time and date at job start Tue Mar 31 2020 10:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36845 * 120.00195 * 2 1 4 4 H 1.07998 * 119.99898 * 223.33758 * 3 2 1 5 5 C 1.39014 * 120.00103 * 43.33354 * 3 2 1 6 6 N 1.31393 * 119.99869 * 8.06989 * 5 3 2 7 7 Si 1.86798 * 120.00069 * 188.06719 * 5 3 2 8 8 H 1.48494 * 109.47014 * 90.00110 * 7 5 3 9 9 H 1.48493 * 109.47165 * 210.00232 * 7 5 3 10 10 H 1.48503 * 109.47179 * 330.00440 * 7 5 3 11 11 C 1.34779 * 119.99821 * 180.02562 * 2 1 3 12 12 O 1.21773 * 119.99671 * 5.69756 * 11 2 1 13 13 C 1.46392 * 120.00220 * 185.70041 * 11 2 1 14 14 C 1.35378 * 125.05220 * 186.65882 * 13 11 2 15 15 C 1.40303 * 115.37463 * 180.18225 * 14 13 11 16 16 S 1.76997 * 136.05979 * 179.87787 * 15 14 13 17 17 C 1.75387 * 92.88278 * 179.66991 * 16 15 14 18 18 C 1.40156 * 130.05849 * 180.02562 * 17 16 15 19 19 C 1.37534 * 120.09751 * 180.02562 * 18 17 16 20 20 C 1.38783 * 120.27686 * 359.96302 * 19 18 17 21 21 C 1.36251 * 120.44236 * 0.02562 * 20 19 18 22 22 C 1.38799 * 110.35928 * 0.02562 * 17 16 15 23 23 C 1.36323 * 113.34112 * 359.56514 * 15 14 13 24 24 S 1.75315 * 125.05004 * 6.38794 * 13 11 2 25 25 H 1.08999 * 109.46680 * 266.12254 * 1 2 3 26 26 H 1.09002 * 109.46918 * 26.11877 * 1 2 3 27 27 H 1.08997 * 109.47605 * 146.12299 * 1 2 3 28 28 H 0.96997 * 120.00182 * 179.97438 * 6 5 3 29 29 H 1.07996 * 122.31043 * 359.77139 * 14 13 11 30 30 H 1.08000 * 119.95047 * 0.02562 * 18 17 16 31 31 H 1.07996 * 119.85941 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.77216 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.87452 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1493 1.1851 0.0000 4 1 3.0084 1.3126 -0.6419 5 6 1.7385 2.2249 0.8262 6 7 0.7966 2.0214 1.7194 7 14 2.5257 3.9114 0.6665 8 1 1.7635 4.7223 -0.3166 9 1 2.5110 4.5915 1.9865 10 1 3.9284 3.7611 0.2026 11 6 2.1389 -1.1672 -0.0005 12 8 1.5345 -2.2191 -0.1057 13 6 3.5974 -1.1705 0.1254 14 6 4.3854 -2.2652 0.0092 15 6 5.7601 -2.0364 0.1711 16 16 7.2291 -3.0232 0.1369 17 6 8.2680 -1.6457 0.4517 18 6 9.6618 -1.5784 0.5826 19 6 10.2736 -0.3723 0.8331 20 6 9.5163 0.7840 0.9569 21 6 8.1603 0.7378 0.8324 22 6 7.5115 -0.4886 0.5759 23 6 6.0655 -0.7298 0.4115 24 16 4.5838 0.2437 0.4424 25 1 -0.3633 -0.0695 1.0253 26 1 -0.3633 0.9228 -0.4524 27 1 -0.3634 -0.8532 -0.5728 28 1 0.5102 2.7468 2.2961 29 1 3.9829 -3.2479 -0.1876 30 1 10.2563 -2.4749 0.4867 31 1 11.3478 -0.3250 0.9337 32 1 10.0051 1.7267 1.1540 33 1 7.5798 1.6433 0.9308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354138763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:04 Heat of formation + Delta-G solvation = 16.361249 kcal Electronic energy + Delta-G solvation = -20748.816007 eV Core-core repulsion = 17570.612223 eV Total energy + Delta-G solvation = -3178.203785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.028 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.68514 -40.37612 -38.11613 -36.81427 -33.75814 -33.66090 -31.93470 -30.03876 -28.22623 -26.99263 -25.16938 -24.19852 -22.93853 -21.98695 -20.64691 -19.63102 -18.63209 -18.19837 -17.15071 -16.85865 -16.52329 -16.14808 -15.98987 -15.94597 -15.59835 -15.11019 -14.89877 -14.44337 -13.99624 -13.96478 -13.80421 -13.37092 -13.25873 -13.18824 -12.89237 -12.73438 -12.62136 -12.45300 -12.07692 -11.73200 -11.55451 -11.30632 -11.05240 -10.78707 -10.57127 -9.81394 -9.68241 -9.04566 -8.52881 -8.38891 -6.40492 -0.78674 0.19824 0.27076 0.47580 0.72199 0.85682 1.25560 1.34811 1.42983 1.48260 1.54844 2.16226 2.30734 2.74582 2.77766 2.93266 3.56890 3.89115 4.01464 4.10334 4.26254 4.41755 4.47966 4.52329 4.65383 4.69978 4.80469 4.96020 5.03639 5.06311 5.10920 5.18939 5.28525 5.41791 5.52472 5.73386 5.93972 6.14471 6.83321 7.25751 7.71241 8.49361 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.016159 B = 0.005100 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.318930 B = 5489.006613 C = 7104.718038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.443 5.443 3 C -0.366 4.366 4 H 0.109 0.891 5 C 0.031 3.969 6 N -0.868 5.868 7 Si 0.964 3.036 8 H -0.261 1.261 9 H -0.271 1.271 10 H -0.241 1.241 11 C 0.519 3.481 12 O -0.627 6.627 13 C -0.222 4.222 14 C -0.060 4.060 15 C -0.180 4.180 16 S 0.119 5.881 17 C -0.142 4.142 18 C -0.090 4.090 19 C -0.092 4.092 20 C -0.111 4.111 21 C -0.098 4.098 22 C -0.055 4.055 23 C -0.222 4.222 24 S 0.288 5.712 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.284 0.716 29 H 0.141 0.859 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.050 1.649 -0.811 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.159 5.159 3 C -0.499 4.499 4 H 0.126 0.874 5 C -0.179 4.179 6 N -0.500 5.500 7 Si 0.784 3.216 8 H -0.186 1.186 9 H -0.196 1.196 10 H -0.164 1.164 11 C 0.309 3.691 12 O -0.517 6.517 13 C -0.344 4.344 14 C -0.096 4.096 15 C -0.304 4.304 16 S 0.380 5.620 17 C -0.259 4.259 18 C -0.113 4.113 19 C -0.113 4.113 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.064 4.064 23 C -0.346 4.346 24 S 0.562 5.438 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.158 0.842 30 H 0.171 0.829 31 H 0.188 0.812 32 H 0.180 0.820 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 17.479 1.253 -0.697 17.538 hybrid contribution -0.815 0.342 0.071 0.887 sum 16.664 1.596 -0.626 16.752 Atomic orbital electron populations 1.21285 0.80255 1.00128 1.00477 1.43464 1.06174 1.04578 1.61698 1.19752 1.14225 0.90654 1.25310 0.87435 1.26435 0.95746 1.03585 0.92152 1.69974 1.27513 1.34998 1.17533 0.85328 0.80635 0.76716 0.78872 1.18595 1.19588 1.16427 1.17584 0.85767 0.84087 0.81663 1.90630 1.69919 1.32466 1.58672 1.23925 0.97524 0.98892 1.14065 1.19784 0.89424 0.99142 1.01298 1.22218 0.97769 0.97154 1.13285 1.83444 0.92004 1.07015 1.79517 1.22713 0.98938 0.96146 1.08056 1.20954 0.89464 1.00497 1.00395 1.21537 1.01840 0.90875 0.97000 1.21148 0.92387 1.00590 0.98980 1.21073 0.96192 0.95345 0.99282 1.18611 0.88049 0.95418 1.04329 1.26108 1.00629 0.99589 1.08285 1.85286 0.88041 1.04049 1.66473 0.93795 0.91520 0.93494 0.90620 0.84153 0.82899 0.81166 0.82049 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.87 8.90 127.77 1.14 7.01 16 2 N -0.44 -22.88 2.89 -663.74 -1.92 -24.80 16 3 C -0.37 -17.72 6.64 84.10 0.56 -17.16 16 4 H 0.11 5.02 5.67 -13.22 -0.07 4.94 16 5 C 0.03 1.43 5.22 84.94 0.44 1.88 16 6 N -0.87 -43.01 11.89 21.68 0.26 -42.75 16 7 Si 0.96 35.31 29.56 68.60 2.03 37.34 16 8 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 9 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 10 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 11 C 0.52 27.53 7.58 86.36 0.65 28.18 16 12 O -0.63 -35.80 16.40 -4.58 -0.08 -35.88 16 13 C -0.22 -10.46 6.20 23.73 0.15 -10.31 16 14 C -0.06 -2.57 9.91 22.11 0.22 -2.36 16 15 C -0.18 -6.95 6.80 22.33 0.15 -6.79 16 16 S 0.12 3.62 23.23 -56.49 -1.31 2.31 16 17 C -0.14 -4.01 6.41 22.87 0.15 -3.87 16 18 C -0.09 -1.80 10.09 22.57 0.23 -1.58 16 19 C -0.09 -1.43 10.02 22.23 0.22 -1.20 16 20 C -0.11 -1.97 9.96 21.94 0.22 -1.75 16 21 C -0.10 -2.51 10.04 22.51 0.23 -2.28 16 22 C -0.05 -1.75 6.02 -20.00 -0.12 -1.87 16 23 C -0.22 -8.40 7.11 24.27 0.17 -8.23 16 24 S 0.29 11.87 18.69 -56.49 -1.06 10.81 16 25 H 0.04 2.21 7.65 -2.39 -0.02 2.19 16 26 H 0.07 3.05 7.91 -2.39 -0.02 3.03 16 27 H 0.05 2.19 7.46 -2.39 -0.02 2.17 16 28 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16 29 H 0.14 5.92 8.01 -2.91 -0.02 5.90 16 30 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -63.13 312.15 3.43 -59.69 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 1.10 Total: 13.60 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 4.41 Total: -20.33 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -1.66 Total: -67.55 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.08 Total: -35.88 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Atomic # 16 Polarization: 15.49 SS G_CDS: -2.37 Total: 13.12 kcal Total: -63.13 3.43 -59.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354138763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.056 kcal (2) G-P(sol) polarization free energy of solvation -63.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds