Wall clock time and date at job start Tue Mar 31 2020 11:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86806 * 119.99660 * 2 1 4 4 H 1.48491 * 109.46959 * 274.97674 * 3 2 1 5 5 H 1.48503 * 109.46978 * 34.97746 * 3 2 1 6 6 H 1.48502 * 109.47036 * 154.97531 * 3 2 1 7 7 C 1.40042 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99856 * 186.05912 * 7 2 1 9 9 C 1.46375 * 120.00339 * 6.06124 * 7 2 1 10 10 O 1.21688 * 119.99785 * 352.78265 * 9 7 2 11 11 N 1.34777 * 120.00148 * 172.50369 * 9 7 2 12 12 C 1.46506 * 119.99735 * 0.02562 * 11 9 7 13 13 C 1.52998 * 109.47000 * 89.99929 * 12 11 9 14 14 O 1.42898 * 109.46996 * 65.00059 * 13 12 11 15 15 C 1.46495 * 120.00076 * 179.97438 * 11 9 7 16 16 C 1.50708 * 109.46797 * 90.00039 * 15 11 9 17 17 C 1.38256 * 119.98206 * 269.72055 * 16 15 11 18 18 C 1.38211 * 120.04084 * 179.76913 * 17 16 15 19 19 C 1.38350 * 119.99472 * 0.50980 * 18 17 16 20 20 Cl 1.73598 * 120.01807 * 179.72269 * 19 18 17 21 21 C 1.38446 * 119.96342 * 359.75001 * 19 18 17 22 22 Cl 1.73595 * 120.02130 * 180.02562 * 21 19 18 23 23 C 1.38205 * 119.97943 * 90.00161 * 16 15 11 24 24 H 0.96993 * 120.00694 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46538 * 209.99815 * 12 11 9 26 26 H 1.08994 * 109.47230 * 329.99387 * 12 11 9 27 27 H 1.09005 * 109.46926 * 184.99496 * 13 12 11 28 28 H 1.08993 * 109.47313 * 304.99858 * 13 12 11 29 29 H 0.96705 * 113.99935 * 179.97438 * 14 13 12 30 30 H 1.08996 * 109.47255 * 209.99837 * 15 11 9 31 31 H 1.08998 * 109.47048 * 330.00558 * 15 11 9 32 32 H 1.08005 * 119.98128 * 0.02562 * 17 16 15 33 33 H 1.07990 * 120.00304 * 180.25787 * 18 17 16 34 34 H 1.08004 * 119.99872 * 359.95884 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4946 2.6201 0.8026 6 1 3.5869 1.4123 0.5923 7 6 2.0070 -1.2128 0.0005 8 1 3.0825 -1.2153 0.0993 9 6 1.2813 -2.4770 -0.1327 10 8 0.0647 -2.4853 -0.1119 11 7 1.9606 -3.6312 -0.2842 12 6 3.4253 -3.6205 -0.3148 13 6 3.9663 -3.7863 1.1067 14 8 3.6080 -5.0767 1.6052 15 6 1.2343 -4.8965 -0.4170 16 6 0.9535 -5.1640 -1.8733 17 6 -0.2176 -4.7046 -2.4469 18 6 -0.4741 -4.9451 -3.7835 19 6 0.4364 -5.6550 -4.5457 20 17 0.1114 -5.9636 -6.2228 21 6 1.6066 -6.1197 -3.9701 22 17 2.7504 -7.0101 -4.9252 23 6 1.8642 -5.8734 -2.6333 24 1 -0.4851 0.8399 -0.0004 25 1 3.7816 -4.4413 -0.9373 26 1 3.7731 -2.6738 -0.7279 27 1 5.0520 -3.6897 1.0958 28 1 3.5395 -3.0169 1.7500 29 1 3.9194 -5.2515 2.5039 30 1 1.8384 -5.7067 -0.0087 31 1 0.2930 -4.8342 0.1290 32 1 -0.9305 -4.1538 -1.8511 33 1 -1.3872 -4.5823 -4.2319 34 1 2.7770 -6.2353 -2.1836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357575724.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:18 Heat of formation + Delta-G solvation = -97.227943 kcal Electronic energy + Delta-G solvation = -22007.049728 eV Core-core repulsion = 18376.690920 eV Total energy + Delta-G solvation = -3630.358809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81385 -39.52372 -37.62075 -37.60377 -37.55643 -35.59229 -34.54191 -32.80454 -31.92643 -29.69500 -28.70895 -26.45296 -24.12543 -23.47699 -22.87149 -20.88278 -18.60610 -18.28039 -18.21050 -17.43358 -16.86054 -16.75487 -16.71412 -15.89386 -15.56879 -15.12046 -14.92173 -14.83315 -14.36480 -14.19711 -13.97264 -13.33493 -13.08362 -13.01743 -12.91710 -12.82624 -12.72906 -12.47218 -12.33564 -12.29731 -12.02852 -11.98803 -11.90877 -11.85421 -10.89006 -10.77296 -10.01460 -9.84523 -9.53567 -9.06470 -8.24507 -6.76889 -0.10097 0.07560 0.77447 1.12546 1.41176 1.42049 1.56315 2.22758 2.37015 2.52056 3.03605 3.55571 3.58076 3.62944 3.91405 4.06628 4.18013 4.23647 4.38287 4.47644 4.53240 4.61999 4.76440 4.85178 4.92762 5.00235 5.06820 5.15307 5.40730 5.48410 5.57497 5.83327 6.17568 6.45108 6.93813 7.02722 7.48502 8.53703 8.72871 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.004387 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.080615 B = 6380.733254 C = 7408.372459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.245 1.245 7 C -0.565 4.565 8 H 0.091 0.909 9 C 0.545 3.455 10 O -0.620 6.620 11 N -0.627 5.627 12 C 0.121 3.879 13 C 0.066 3.934 14 O -0.583 6.583 15 C 0.171 3.829 16 C -0.079 4.079 17 C -0.091 4.091 18 C -0.102 4.102 19 C -0.039 4.039 20 Cl -0.048 7.048 21 C -0.036 4.036 22 Cl -0.045 7.045 23 C -0.084 4.084 24 H 0.271 0.729 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.390 0.610 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.152 0.848 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.164 -10.873 -5.248 14.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.168 1.168 7 C -0.602 4.602 8 H 0.109 0.891 9 C 0.351 3.649 10 O -0.506 6.506 11 N -0.362 5.362 12 C -0.003 4.003 13 C -0.013 4.013 14 O -0.391 6.391 15 C 0.047 3.953 16 C -0.082 4.082 17 C -0.110 4.110 18 C -0.120 4.120 19 C -0.067 4.067 20 Cl -0.019 7.019 21 C -0.064 4.064 22 Cl -0.015 7.015 23 C -0.103 4.103 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.239 0.761 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.170 0.830 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.161 -10.952 -6.038 14.411 hybrid contribution 0.151 0.919 0.416 1.020 sum 7.311 -10.033 -5.622 13.628 Atomic orbital electron populations 1.70175 1.09326 1.28576 1.36807 1.26832 0.95344 1.04497 0.91436 0.85198 0.79336 0.76109 0.78920 1.19285 1.20230 1.16812 1.21456 0.95145 0.89937 1.53615 0.89122 1.18571 0.86641 0.83803 0.75932 1.90538 1.15954 1.86726 1.57426 1.47812 1.05959 1.05353 1.77070 1.21519 0.80301 1.02749 0.95687 1.22630 0.98698 0.84361 0.95573 1.86411 1.81886 1.34422 1.36380 1.19977 0.97707 0.87831 0.89767 1.20638 0.93564 0.95685 0.98266 1.21286 0.97743 0.97309 0.94711 1.21144 0.99769 0.97940 0.93182 1.20779 0.95767 1.03089 0.87088 1.98359 1.95225 1.94499 1.13857 1.20760 0.91826 1.00887 0.92930 1.98363 1.58646 1.73276 1.71264 1.21021 1.00190 0.98335 0.90744 0.91892 0.90020 0.89428 0.90558 0.95243 0.76141 0.88128 0.92807 0.86407 0.83023 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.42 11.86 21.83 0.26 -48.16 16 2 C 0.03 1.83 5.49 85.30 0.47 2.30 16 3 Si 0.98 39.46 29.56 68.60 2.03 41.48 16 4 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.25 -8.95 7.11 99.48 0.71 -8.25 16 7 C -0.57 -29.99 8.65 24.83 0.21 -29.78 16 8 H 0.09 4.26 6.15 -2.91 -0.02 4.25 16 9 C 0.54 29.57 7.60 86.36 0.66 30.22 16 10 O -0.62 -38.78 14.16 -4.31 -0.06 -38.84 16 11 N -0.63 -26.53 2.42 -831.25 -2.01 -28.54 16 12 C 0.12 4.02 5.48 86.38 0.47 4.49 16 13 C 0.07 1.88 7.39 71.98 0.53 2.41 16 14 O -0.58 -15.41 12.48 -148.98 -1.86 -17.27 16 15 C 0.17 6.44 5.35 85.64 0.46 6.90 16 16 C -0.08 -2.75 5.46 -19.87 -0.11 -2.86 16 17 C -0.09 -3.36 9.70 22.27 0.22 -3.14 16 18 C -0.10 -3.18 9.83 22.29 0.22 -2.96 16 19 C -0.04 -1.15 6.32 22.35 0.14 -1.01 16 20 Cl -0.05 -1.23 27.96 -2.72 -0.08 -1.31 16 21 C -0.04 -1.03 6.32 22.35 0.14 -0.89 16 22 Cl -0.04 -1.08 27.96 -2.72 -0.08 -1.15 16 23 C -0.08 -2.42 9.48 22.29 0.21 -2.21 16 24 H 0.27 14.68 8.29 -92.71 -0.77 13.91 16 25 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 26 H 0.09 3.02 6.20 -2.39 -0.01 3.01 16 27 H 0.08 1.62 8.14 -2.38 -0.02 1.61 16 28 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.39 6.67 9.12 -74.05 -0.68 5.99 16 30 H 0.10 3.26 7.05 -2.39 -0.02 3.25 16 31 H 0.05 2.33 7.36 -2.39 -0.02 2.31 16 32 H 0.12 5.03 7.58 -2.91 -0.02 5.01 16 33 H 0.15 4.17 8.06 -2.92 -0.02 4.15 16 34 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -70.29 327.04 2.31 -67.98 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.48 Total: 22.34 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 3.62 Total: 3.47 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -1.75 Total: -76.70 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -1.92 Total: -56.11 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.15 Total: -2.46 kcal Total: -70.29 2.31 -67.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357575724.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.246 kcal (2) G-P(sol) polarization free energy of solvation -70.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds