Wall clock time and date at job start Tue Mar 31 2020 11:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 116.99929 * 2 1 4 4 O 1.20827 * 119.99903 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00147 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46924 * 300.00561 * 5 3 2 7 7 N 1.46896 * 109.47080 * 180.02562 * 5 3 2 8 8 C 1.46898 * 111.00459 * 85.00266 * 7 5 3 9 9 C 1.50697 * 109.47653 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99490 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00223 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00142 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00096 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47230 * 89.99522 * 13 11 9 15 15 H 1.48494 * 109.47374 * 209.99707 * 13 11 9 16 16 H 1.48501 * 109.47127 * 329.99928 * 13 11 9 17 17 C 1.50694 * 109.46838 * 60.00267 * 5 3 2 18 18 C 1.38244 * 119.99311 * 100.00298 * 17 5 3 19 19 C 1.38198 * 120.02608 * 179.97438 * 18 17 5 20 20 C 1.38380 * 120.01543 * 0.04422 * 19 18 17 21 21 Cl 1.73603 * 120.01071 * 180.02562 * 20 19 18 22 22 C 1.38315 * 119.98694 * 359.97438 * 20 19 18 23 23 C 1.38337 * 119.99565 * 280.04078 * 17 5 3 24 24 Cl 1.73607 * 120.00658 * 0.02562 * 23 17 5 25 25 H 1.09005 * 109.46993 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47672 * 299.99910 * 1 2 3 27 27 H 1.09003 * 109.47076 * 60.00268 * 1 2 3 28 28 H 1.00907 * 110.99755 * 208.95742 * 7 5 3 29 29 H 1.09005 * 109.47126 * 300.00067 * 8 7 5 30 30 H 1.09000 * 109.47333 * 59.99266 * 8 7 5 31 31 H 0.96999 * 120.00624 * 180.02562 * 12 11 9 32 32 H 1.07992 * 119.98735 * 0.02562 * 18 17 5 33 33 H 1.08002 * 119.99652 * 180.02562 * 19 18 17 34 34 H 1.07996 * 120.01293 * 179.73135 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7809 0.8908 7 7 3.9827 2.6836 0.0011 8 6 4.0169 3.2221 1.3674 9 6 4.4480 4.6656 1.3279 10 1 4.6743 5.1358 0.3824 11 6 4.5544 5.3856 2.4989 12 7 4.2792 4.8128 3.6503 13 14 5.0880 7.1750 2.4499 14 1 3.8919 8.0448 2.3151 15 1 5.8061 7.5120 3.7051 16 1 5.9901 7.3910 1.2902 17 6 4.1055 0.5916 -1.2295 18 6 4.4936 1.3428 -2.3233 19 6 4.9887 0.7169 -3.4516 20 6 5.0955 -0.6623 -3.4875 21 17 5.7181 -1.4484 -4.9046 22 6 4.7071 -1.4144 -2.3936 23 6 4.2115 -0.7872 -1.2644 24 17 3.7226 -1.7305 0.1086 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 4.8759 2.7968 -0.4547 29 1 3.0237 3.1512 1.8109 30 1 4.7240 2.6484 1.9665 31 1 4.3537 5.3194 4.4741 32 1 4.4105 2.4192 -2.2957 33 1 5.2921 1.3043 -4.3056 34 1 4.7862 -2.4911 -2.4228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411510760.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:42 Heat of formation + Delta-G solvation = -81.283227 kcal Electronic energy + Delta-G solvation = -21870.306500 eV Core-core repulsion = 18240.639106 eV Total energy + Delta-G solvation = -3629.667394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76966 -40.48214 -38.04551 -37.72061 -37.28048 -36.71037 -34.81226 -32.45056 -32.02126 -29.50012 -28.59979 -26.66455 -24.48160 -23.56329 -23.23995 -21.50118 -19.20169 -18.68793 -18.22813 -17.61949 -17.55048 -16.97810 -16.61414 -16.31372 -15.86617 -15.29107 -15.02424 -14.93899 -14.74399 -14.30061 -14.22187 -14.00597 -13.40554 -13.31677 -13.14664 -12.95819 -12.80400 -12.57166 -12.52952 -12.15015 -12.04732 -11.97314 -11.87560 -11.72864 -11.55685 -11.31946 -10.67463 -10.02430 -9.73587 -9.39734 -8.22647 -6.33332 -0.23898 0.01364 0.78389 1.15009 1.27940 1.42382 1.44944 1.55397 1.65922 2.34066 2.41197 3.11858 3.20170 3.36395 3.69258 3.89910 3.94956 4.02193 4.19279 4.28303 4.32675 4.33780 4.67653 4.69780 4.77044 4.94595 5.02006 5.14778 5.18409 5.33122 5.46318 5.56795 5.93591 6.24858 6.51893 6.82439 6.83963 7.36703 8.89610 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.004146 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.894336 B = 6751.191015 C = 7948.570313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.467 3.533 4 O -0.513 6.513 5 C 0.138 3.862 6 H 0.085 0.915 7 N -0.663 5.663 8 C 0.213 3.787 9 C -0.531 4.531 10 H 0.070 0.930 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.974 3.026 14 H -0.278 1.278 15 H -0.281 1.281 16 H -0.258 1.258 17 C -0.092 4.092 18 C -0.080 4.080 19 C -0.097 4.097 20 C -0.020 4.020 21 Cl -0.047 7.047 22 C -0.100 4.100 23 C -0.011 4.011 24 Cl -0.044 7.044 25 H 0.136 0.864 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.356 0.644 29 H -0.005 1.005 30 H -0.027 1.027 31 H 0.265 0.735 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.504 -16.130 -15.170 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.308 3.692 4 O -0.400 6.400 5 C 0.026 3.974 6 H 0.102 0.898 7 N -0.299 5.299 8 C 0.085 3.915 9 C -0.570 4.570 10 H 0.089 0.911 11 C -0.197 4.197 12 N -0.575 5.575 13 Si 0.798 3.202 14 H -0.204 1.204 15 H -0.207 1.207 16 H -0.181 1.181 17 C -0.093 4.093 18 C -0.098 4.098 19 C -0.116 4.116 20 C -0.047 4.047 21 Cl -0.018 7.018 22 C -0.119 4.119 23 C -0.039 4.039 24 Cl -0.015 7.015 25 H 0.154 0.846 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.178 0.822 29 H 0.013 0.987 30 H -0.010 1.010 31 H 0.074 0.926 32 H 0.171 0.829 33 H 0.185 0.815 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.351 -15.726 -15.119 21.817 hybrid contribution 0.470 0.453 1.072 1.255 sum 0.119 -15.272 -14.047 20.750 Atomic orbital electron populations 1.23506 0.75389 1.05536 1.02064 1.86582 1.24378 1.31646 1.83889 1.23711 0.91732 0.81608 0.72134 1.90663 1.66940 1.37627 1.44721 1.19765 0.88193 0.91832 0.97586 0.89800 1.60176 1.35937 1.12250 1.21510 1.19262 0.94004 0.94620 0.83566 1.21452 1.45329 0.96549 0.93622 0.91145 1.25942 0.95308 1.03600 0.94803 1.70091 1.50055 1.38818 0.98524 0.85310 0.78401 0.78487 0.77960 1.20383 1.20696 1.18138 1.19464 1.02010 0.92220 0.95613 1.21202 0.95999 1.01631 0.90973 1.21377 0.98424 0.92563 0.99208 1.20891 1.01185 0.93029 0.89595 1.98392 1.85278 1.80375 1.37728 1.21010 0.99071 1.01870 0.89985 1.20644 1.01635 0.90583 0.91037 1.98397 1.89697 1.71522 1.41846 0.84557 0.92958 0.92113 0.82167 0.98721 1.00985 0.92635 0.82898 0.81543 0.81731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.88 16 2 O -0.35 -10.84 8.31 -51.44 -0.43 -11.27 16 3 C 0.47 18.03 7.12 71.24 0.51 18.54 16 4 O -0.51 -23.87 15.67 21.96 0.34 -23.53 16 5 C 0.14 5.05 2.23 43.42 0.10 5.14 16 6 H 0.08 3.18 7.01 -2.39 -0.02 3.16 16 7 N -0.66 -28.31 5.13 -503.39 -2.58 -30.89 16 8 C 0.21 11.49 5.13 85.56 0.44 11.93 16 9 C -0.53 -30.25 9.32 25.60 0.24 -30.02 16 10 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 11 C 0.00 0.10 5.46 84.65 0.46 0.56 16 12 N -0.93 -57.00 13.29 21.44 0.28 -56.72 16 13 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 17 C -0.09 -2.60 4.96 -19.84 -0.10 -2.70 16 18 C -0.08 -1.96 8.87 22.26 0.20 -1.76 16 19 C -0.10 -1.86 9.83 22.29 0.22 -1.64 16 20 C -0.02 -0.37 6.32 22.32 0.14 -0.23 16 21 Cl -0.05 -0.74 28.96 -2.72 -0.08 -0.82 16 22 C -0.10 -1.96 9.62 22.32 0.21 -1.75 16 23 C -0.01 -0.28 6.14 22.32 0.14 -0.14 16 24 Cl -0.04 -1.09 25.57 -2.72 -0.07 -1.16 16 25 H 0.14 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 27 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 28 H 0.36 13.48 6.97 -89.69 -0.62 12.85 16 29 H -0.01 -0.33 7.62 -2.38 -0.02 -0.35 16 30 H -0.03 -1.55 8.05 -2.39 -0.02 -1.57 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.15 3.92 6.70 -2.91 -0.02 3.90 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -69.94 326.33 3.77 -66.16 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.52 Total: 11.98 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 3.75 Total: -0.19 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -2.30 Total: -87.60 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.08 Total: -34.80 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.15 Total: -1.98 kcal Total: -69.94 3.77 -66.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411510760.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.119 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds