Wall clock time and date at job start Tue Mar 31 2020 11:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 116.99923 * 2 1 4 4 O 1.20821 * 120.00599 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99682 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46904 * 60.00187 * 5 3 2 7 7 N 1.46905 * 109.47074 * 179.97438 * 5 3 2 8 8 C 1.46895 * 111.00300 * 275.00252 * 7 5 3 9 9 C 1.50697 * 109.47174 * 179.97438 * 8 7 5 10 10 H 1.07992 * 119.99940 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99763 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00377 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99926 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46907 * 90.00199 * 13 11 9 15 15 H 1.48498 * 109.47243 * 210.00153 * 13 11 9 16 16 H 1.48498 * 109.46897 * 330.00419 * 13 11 9 17 17 C 1.50700 * 109.47464 * 300.00136 * 5 3 2 18 18 C 1.38234 * 119.99320 * 265.00057 * 17 5 3 19 19 C 1.38205 * 120.02561 * 179.97438 * 18 17 5 20 20 C 1.38385 * 120.01103 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 120.00274 * 179.97438 * 20 19 18 22 22 C 1.38304 * 119.98984 * 359.97438 * 20 19 18 23 23 C 1.38337 * 119.98929 * 84.99554 * 17 5 3 24 24 Cl 1.73599 * 120.01274 * 359.97438 * 23 17 5 25 25 H 1.08998 * 109.46989 * 300.00140 * 1 2 3 26 26 H 1.09006 * 109.46886 * 59.99869 * 1 2 3 27 27 H 1.08996 * 109.47045 * 179.97438 * 1 2 3 28 28 H 1.00896 * 110.99386 * 151.04864 * 7 5 3 29 29 H 1.09004 * 109.47001 * 300.00272 * 8 7 5 30 30 H 1.09003 * 109.47037 * 59.99938 * 8 7 5 31 31 H 0.97000 * 120.00273 * 180.02562 * 12 11 9 32 32 H 1.08002 * 119.99138 * 359.97438 * 18 17 5 33 33 H 1.07999 * 119.99496 * 180.27416 * 19 18 17 34 34 H 1.07992 * 120.01774 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 7 3.9830 2.6836 -0.0002 8 6 4.0182 3.2215 -1.3666 9 6 4.4481 4.6653 -1.3272 10 1 4.6723 5.1363 -0.3816 11 6 4.5541 5.3851 -2.4983 12 7 4.2797 4.8120 -3.6497 13 14 5.0864 7.1751 -2.4494 14 1 6.5653 7.2549 -2.5579 15 1 4.4667 7.9069 -3.5833 16 1 4.6503 7.7863 -1.1683 17 6 4.1048 0.5919 1.2314 18 6 4.3948 1.3328 2.3618 19 6 4.8880 0.7071 3.4910 20 6 5.0924 -0.6615 3.4905 21 17 5.7127 -1.4472 4.9089 22 6 4.8025 -1.4034 2.3598 23 6 4.3086 -0.7764 1.2296 24 17 3.9437 -1.7069 -0.1898 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 4.8757 2.7968 0.4561 29 1 4.7258 2.6474 -1.9649 30 1 3.0253 3.1504 -1.8108 31 1 4.3546 5.3184 -4.4736 32 1 4.2358 2.4011 2.3625 33 1 5.1102 1.2858 4.3754 34 1 4.9623 -2.4714 2.3588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411510761.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:44 Heat of formation + Delta-G solvation = -83.195160 kcal Electronic energy + Delta-G solvation = -21849.709795 eV Core-core repulsion = 18219.959494 eV Total energy + Delta-G solvation = -3629.750301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.77240 -40.48751 -38.04866 -37.73062 -37.29708 -36.71380 -34.81129 -32.45422 -32.02384 -29.50623 -28.60113 -26.65283 -24.45572 -23.61453 -23.24704 -21.50880 -19.18441 -18.69219 -18.23990 -17.61779 -17.55206 -16.99114 -16.61136 -16.32509 -15.84238 -15.28449 -15.01886 -14.98359 -14.72964 -14.31458 -14.22143 -14.00777 -13.41079 -13.33427 -13.15843 -12.96657 -12.78029 -12.61065 -12.52782 -12.18121 -12.05825 -11.97723 -11.87307 -11.74029 -11.57593 -11.32012 -10.67283 -10.03204 -9.73970 -9.39645 -8.22651 -6.33323 -0.24312 0.00987 0.77355 1.14165 1.26964 1.42132 1.44604 1.55822 1.65030 2.33181 2.41291 3.11830 3.20786 3.36476 3.69484 3.89898 3.94133 4.01274 4.18831 4.28170 4.32266 4.33184 4.67368 4.69797 4.76511 4.94507 5.01417 5.14943 5.18357 5.32246 5.46150 5.56774 5.93486 6.24943 6.51947 6.82010 6.83637 7.36712 8.89572 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.004127 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.031041 B = 6783.488421 C = 7893.948829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.467 3.533 4 O -0.512 6.512 5 C 0.138 3.862 6 H 0.084 0.916 7 N -0.663 5.663 8 C 0.213 3.787 9 C -0.531 4.531 10 H 0.070 0.930 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.974 3.026 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.265 1.265 17 C -0.091 4.091 18 C -0.078 4.078 19 C -0.097 4.097 20 C -0.019 4.019 21 Cl -0.047 7.047 22 C -0.100 4.100 23 C -0.011 4.011 24 Cl -0.047 7.047 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.137 0.863 28 H 0.356 0.644 29 H -0.028 1.028 30 H -0.005 1.005 31 H 0.265 0.735 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 -16.093 15.202 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.308 3.692 4 O -0.399 6.399 5 C 0.026 3.974 6 H 0.102 0.898 7 N -0.297 5.297 8 C 0.086 3.914 9 C -0.569 4.569 10 H 0.088 0.912 11 C -0.196 4.196 12 N -0.575 5.575 13 Si 0.799 3.201 14 H -0.193 1.193 15 H -0.211 1.211 16 H -0.189 1.189 17 C -0.092 4.092 18 C -0.097 4.097 19 C -0.115 4.115 20 C -0.047 4.047 21 Cl -0.017 7.017 22 C -0.119 4.119 23 C -0.038 4.038 24 Cl -0.018 7.018 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.155 0.845 28 H 0.178 0.822 29 H -0.010 1.010 30 H 0.013 0.987 31 H 0.074 0.926 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.407 -15.683 15.146 21.806 hybrid contribution 0.513 0.442 -1.082 1.276 sum 0.106 -15.242 14.064 20.739 Atomic orbital electron populations 1.23516 0.75230 1.05593 1.02112 1.86543 1.24510 1.31807 1.83919 1.23709 0.91744 0.81566 0.72135 1.90662 1.66940 1.37574 1.44697 1.19786 0.88172 0.91866 0.97608 0.89821 1.60159 1.35929 1.12210 1.21450 1.19260 0.93998 0.94607 0.83563 1.21447 1.45379 0.96514 0.93609 0.91178 1.25943 0.95285 1.03614 0.94807 1.70092 1.49975 1.38895 0.98513 0.85308 0.78581 0.78368 0.77888 1.19270 1.21066 1.18880 1.19450 1.02050 0.92378 0.95364 1.21195 0.96232 1.01545 0.90700 1.21382 0.98069 0.92608 0.99488 1.20885 1.01302 0.93157 0.89308 1.98393 1.85347 1.80359 1.37645 1.21005 0.99397 1.01859 0.89647 1.20643 1.02125 0.90790 0.90291 1.98395 1.92935 1.72263 1.38177 0.92041 0.92931 0.84506 0.82225 1.01024 0.98706 0.92634 0.82991 0.81537 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.35 -10.98 9.18 -51.41 -0.47 -11.46 16 3 C 0.47 18.06 7.12 71.24 0.51 18.56 16 4 O -0.51 -23.79 15.68 21.98 0.34 -23.45 16 5 C 0.14 5.03 2.25 43.42 0.10 5.13 16 6 H 0.08 3.18 6.78 -2.38 -0.02 3.17 16 7 N -0.66 -28.31 5.09 -503.36 -2.56 -30.87 16 8 C 0.21 11.52 5.13 85.56 0.44 11.96 16 9 C -0.53 -30.30 9.32 25.60 0.24 -30.06 16 10 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 11 C 0.00 0.10 5.46 84.65 0.46 0.56 16 12 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 13 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 17 C -0.09 -2.59 4.85 -19.84 -0.10 -2.68 16 18 C -0.08 -1.93 8.86 22.26 0.20 -1.73 16 19 C -0.10 -1.85 9.83 22.30 0.22 -1.63 16 20 C -0.02 -0.36 6.32 22.32 0.14 -0.22 16 21 Cl -0.05 -0.74 28.96 -2.72 -0.08 -0.81 16 22 C -0.10 -1.96 9.62 22.32 0.21 -1.75 16 23 C -0.01 -0.27 6.26 22.32 0.14 -0.13 16 24 Cl -0.05 -1.17 26.17 -2.72 -0.07 -1.24 16 25 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 26 H 0.05 1.36 8.13 -2.38 -0.02 1.35 16 27 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.36 13.55 7.26 -89.70 -0.65 12.90 16 29 H -0.03 -1.58 8.05 -2.38 -0.02 -1.60 16 30 H -0.01 -0.32 7.62 -2.39 -0.02 -0.34 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.15 3.93 6.97 -2.91 -0.02 3.91 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -69.92 328.12 3.73 -66.20 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.50 Total: 11.99 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 3.76 Total: -0.09 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -2.28 Total: -87.60 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.13 Total: -34.90 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.15 Total: -2.06 kcal Total: -69.92 3.73 -66.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411510761.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.998 kcal (2) G-P(sol) polarization free energy of solvation -69.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds