Wall clock time and date at job start Tue Mar 31 2020 11:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47357 * 2 1 4 4 S 1.81401 * 109.47152 * 119.99508 * 2 1 3 5 5 C 1.81403 * 103.00221 * 295.00047 * 4 2 1 6 6 C 1.50690 * 109.47070 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00703 * 0.02562 * 6 5 4 8 8 C 1.37889 * 119.99914 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99452 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00083 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47183 * 90.00298 * 10 8 6 12 12 H 1.48499 * 109.47190 * 210.00342 * 10 8 6 13 13 H 1.48503 * 109.47377 * 330.00331 * 10 8 6 14 14 C 1.50697 * 109.47656 * 239.99563 * 2 1 3 15 15 O 1.21294 * 120.00237 * 265.00671 * 14 2 1 16 16 N 1.34777 * 120.00142 * 84.99578 * 14 2 1 17 17 C 1.40079 * 120.00532 * 175.52456 * 16 14 2 18 18 C 1.38835 * 120.04597 * 34.68180 * 17 16 14 19 19 C 1.38120 * 119.96662 * 179.69986 * 18 17 16 20 20 C 1.38489 * 120.06360 * 0.57771 * 19 18 17 21 21 F 1.35096 * 119.94994 * 179.74223 * 20 19 18 22 22 C 1.38448 * 120.09998 * 359.72390 * 20 19 18 23 23 C 1.38230 * 120.03616 * 359.97438 * 22 20 19 24 24 Cl 1.73588 * 120.03813 * 179.97438 * 23 22 20 25 25 H 1.09006 * 109.46958 * 60.00362 * 1 2 3 26 26 H 1.09000 * 109.47175 * 300.00306 * 1 2 3 27 27 H 1.08994 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46937 * 300.00296 * 5 4 2 29 29 H 1.09000 * 109.46466 * 59.99604 * 5 4 2 30 30 H 0.96997 * 119.99631 * 179.97438 * 9 8 6 31 31 H 0.97002 * 119.99900 * 355.53199 * 16 14 2 32 32 H 1.08002 * 120.01762 * 359.97438 * 18 17 16 33 33 H 1.07992 * 119.96644 * 180.30118 * 19 18 17 34 34 H 1.08003 * 119.98506 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.5664 0.2155 2.8310 6 6 1.9974 -0.3693 4.1512 7 1 2.5574 -1.2923 4.1760 8 6 1.6775 0.2748 5.3278 9 7 0.9959 1.3991 5.2975 10 14 2.2122 -0.4497 6.9643 11 1 3.5504 0.0819 7.3273 12 1 1.2304 -0.0780 8.0146 13 1 2.2810 -1.9289 6.8521 14 6 2.0324 -0.7105 -1.2303 15 8 2.3209 -1.8874 -1.1758 16 7 2.1611 -0.0382 -2.3914 17 6 2.7159 -0.6726 -3.5103 18 6 2.4855 -2.0242 -3.7285 19 6 3.0281 -2.6467 -4.8357 20 6 3.8117 -1.9266 -5.7220 21 9 4.3456 -2.5389 -6.8014 22 6 4.0483 -0.5801 -5.5037 23 6 3.5022 0.0485 -4.4003 24 17 3.7994 1.7366 -4.1262 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 2.0001 1.2086 2.7141 29 1 0.4792 0.2883 2.8037 30 1 0.7705 1.8520 6.1252 31 1 1.8697 0.8850 -2.4522 32 1 1.8786 -2.5877 -3.0352 33 1 2.8449 -3.6969 -5.0080 34 1 4.6600 -0.0204 -6.1958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:37 Heat of formation + Delta-G solvation = -67.585790 kcal Electronic energy + Delta-G solvation = -20714.987182 eV Core-core repulsion = 17100.330249 eV Total energy + Delta-G solvation = -3614.656933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.21105 -40.80694 -38.72587 -36.85155 -34.91428 -33.28179 -33.01391 -31.34523 -29.36490 -28.52652 -24.85622 -23.76985 -23.18548 -22.67195 -20.60295 -18.53540 -17.94473 -17.45176 -16.67604 -16.43982 -15.92363 -15.55993 -15.26818 -15.00457 -14.60240 -14.38031 -14.14900 -13.90710 -13.65412 -13.39111 -13.25220 -12.57694 -12.44032 -12.32409 -11.87010 -11.77520 -11.74030 -11.58655 -11.45523 -10.90034 -10.73168 -10.56395 -9.97743 -9.88916 -9.61704 -9.33613 -8.84594 -8.64918 -8.41244 -6.75388 -6.23754 -4.27653 0.55461 0.71656 1.60789 2.04566 2.51556 2.89210 3.14269 3.24681 3.30506 3.36081 3.72832 3.91778 4.28013 4.32960 4.47215 4.61333 4.78764 4.97147 5.04116 5.13965 5.19495 5.26236 5.54233 5.61476 5.68451 5.82815 5.87837 6.03095 6.23604 6.45278 7.02117 7.03008 7.04801 7.71446 7.91819 7.96482 8.74355 9.35751 10.87632 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.002687 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.618749 B =10417.327280 C =10858.743043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.102 0.898 4 S -0.232 6.232 5 C 0.079 3.921 6 C -0.512 4.512 7 H 0.068 0.932 8 C 0.066 3.934 9 N -0.893 5.893 10 Si 0.907 3.093 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.270 1.270 14 C 0.542 3.458 15 O -0.492 6.492 16 N -0.672 5.672 17 C 0.158 3.842 18 C -0.083 4.083 19 C -0.126 4.126 20 C 0.091 3.909 21 F -0.135 7.135 22 C -0.128 4.128 23 C -0.042 4.042 24 Cl -0.050 7.050 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.415 0.585 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 -0.413 -22.658 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.229 4.229 3 H 0.120 0.880 4 S -0.006 6.006 5 C -0.068 4.068 6 C -0.551 4.551 7 H 0.086 0.914 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.329 3.671 15 O -0.364 6.364 16 N -0.319 5.319 17 C 0.062 3.938 18 C -0.103 4.103 19 C -0.146 4.146 20 C 0.071 3.929 21 F -0.113 7.113 22 C -0.148 4.148 23 C -0.071 4.071 24 Cl -0.021 7.021 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.252 0.748 32 H 0.179 0.821 33 H 0.164 0.836 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.004 -1.923 -22.367 22.539 hybrid contribution -0.376 1.599 0.597 1.748 sum 1.627 -0.324 -21.770 21.833 Atomic orbital electron populations 1.21991 0.90956 1.03896 1.02985 1.23155 1.00673 1.03186 0.95846 0.88029 1.87214 1.75355 1.39754 0.98228 1.21195 0.98980 0.95014 0.91649 1.20633 1.36474 1.09325 0.88711 0.91415 1.24948 0.94712 0.94787 0.99307 1.69944 1.38424 1.16548 1.28182 0.86345 0.78436 0.79679 0.82198 1.20330 1.20959 1.19469 1.20281 0.76454 0.87273 0.83090 1.90712 1.46339 1.15231 1.84147 1.43622 1.62298 1.17075 1.08918 1.17529 0.95548 0.92678 0.88064 1.21242 0.99648 0.92765 0.96684 1.21208 0.98011 1.01378 0.93980 1.17413 0.98492 0.90631 0.86378 1.91520 1.84449 1.82869 1.52480 1.20756 1.02354 0.93479 0.98163 1.20433 1.01344 0.86966 0.98375 1.98393 1.94757 1.12883 1.96060 0.92445 0.90151 0.90841 0.94662 0.94273 0.92476 0.74813 0.82095 0.83607 0.83333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.08 37.16 0.34 -1.58 16 2 C -0.10 -1.53 3.18 -27.89 -0.09 -1.62 16 3 H 0.10 1.44 8.14 -51.92 -0.42 1.02 16 4 S -0.23 -5.00 20.38 -107.50 -2.19 -7.19 16 5 C 0.08 1.96 5.39 36.00 0.19 2.15 16 6 C -0.51 -14.17 9.13 -34.44 -0.31 -14.48 16 7 H 0.07 1.89 7.71 -52.49 -0.40 1.49 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 10 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 C 0.54 8.04 6.80 -10.99 -0.07 7.97 16 15 O -0.49 -8.75 13.56 5.55 0.08 -8.68 16 16 N -0.67 -7.68 5.05 -9.82 -0.05 -7.73 16 17 C 0.16 1.79 6.31 -83.61 -0.53 1.26 16 18 C -0.08 -0.93 8.70 -39.40 -0.34 -1.27 16 19 C -0.13 -1.20 10.02 -39.53 -0.40 -1.60 16 20 C 0.09 0.88 7.30 -39.41 -0.29 0.59 16 21 F -0.13 -1.34 17.26 2.25 0.04 -1.30 16 22 C -0.13 -1.17 9.80 -39.51 -0.39 -1.55 16 23 C -0.04 -0.42 6.34 -39.33 -0.25 -0.67 16 24 Cl -0.05 -0.46 27.96 -51.86 -1.45 -1.91 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.21 6.92 -51.93 -0.36 0.85 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.99 7.14 -51.92 -0.37 0.62 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.41 3.75 8.08 -40.82 -0.33 3.42 16 32 H 0.16 1.96 6.20 -52.49 -0.33 1.64 16 33 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.15 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -30.31 328.89 -8.60 -38.91 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.46 Total: 0.49 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.23 Total: -9.06 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.69 Total: -32.31 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -2.19 Total: -7.19 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.45 Total: -1.91 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.31 -8.60 -38.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.673 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds