Wall clock time and date at job start Tue Mar 31 2020 11:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47357 * 2 1 4 4 S 1.81401 * 109.47152 * 119.99508 * 2 1 3 5 5 C 1.81403 * 103.00221 * 295.00047 * 4 2 1 6 6 C 1.50690 * 109.47070 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00703 * 0.02562 * 6 5 4 8 8 C 1.37889 * 119.99914 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99452 * 0.02562 * 8 6 5 10 10 Si 1.86790 * 120.00083 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47183 * 90.00298 * 10 8 6 12 12 H 1.48499 * 109.47190 * 210.00342 * 10 8 6 13 13 H 1.48503 * 109.47377 * 330.00331 * 10 8 6 14 14 C 1.50697 * 109.47656 * 239.99563 * 2 1 3 15 15 O 1.21294 * 120.00237 * 265.00671 * 14 2 1 16 16 N 1.34777 * 120.00142 * 84.99578 * 14 2 1 17 17 C 1.40079 * 120.00532 * 175.52456 * 16 14 2 18 18 C 1.38835 * 120.04597 * 34.68180 * 17 16 14 19 19 C 1.38120 * 119.96662 * 179.69986 * 18 17 16 20 20 C 1.38489 * 120.06360 * 0.57771 * 19 18 17 21 21 F 1.35096 * 119.94994 * 179.74223 * 20 19 18 22 22 C 1.38448 * 120.09998 * 359.72390 * 20 19 18 23 23 C 1.38230 * 120.03616 * 359.97438 * 22 20 19 24 24 Cl 1.73588 * 120.03813 * 179.97438 * 23 22 20 25 25 H 1.09006 * 109.46958 * 60.00362 * 1 2 3 26 26 H 1.09000 * 109.47175 * 300.00306 * 1 2 3 27 27 H 1.08994 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46937 * 300.00296 * 5 4 2 29 29 H 1.09000 * 109.46466 * 59.99604 * 5 4 2 30 30 H 0.96997 * 119.99631 * 179.97438 * 9 8 6 31 31 H 0.97002 * 119.99900 * 355.53199 * 16 14 2 32 32 H 1.08002 * 120.01762 * 359.97438 * 18 17 16 33 33 H 1.07992 * 119.96644 * 180.30118 * 19 18 17 34 34 H 1.08003 * 119.98506 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.5664 0.2155 2.8310 6 6 1.9974 -0.3693 4.1512 7 1 2.5574 -1.2923 4.1760 8 6 1.6775 0.2748 5.3278 9 7 0.9959 1.3991 5.2975 10 14 2.2122 -0.4497 6.9643 11 1 3.5504 0.0819 7.3273 12 1 1.2304 -0.0780 8.0146 13 1 2.2810 -1.9289 6.8521 14 6 2.0324 -0.7105 -1.2303 15 8 2.3209 -1.8874 -1.1758 16 7 2.1611 -0.0382 -2.3914 17 6 2.7159 -0.6726 -3.5103 18 6 2.4855 -2.0242 -3.7285 19 6 3.0281 -2.6467 -4.8357 20 6 3.8117 -1.9266 -5.7220 21 9 4.3456 -2.5389 -6.8014 22 6 4.0483 -0.5801 -5.5037 23 6 3.5022 0.0485 -4.4003 24 17 3.7994 1.7366 -4.1262 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 2.0001 1.2086 2.7141 29 1 0.4792 0.2883 2.8037 30 1 0.7705 1.8520 6.1252 31 1 1.8697 0.8850 -2.4522 32 1 1.8786 -2.5877 -3.0352 33 1 2.8449 -3.6969 -5.0080 34 1 4.6600 -0.0204 -6.1958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413009418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:31 Heat of formation + Delta-G solvation = -84.199941 kcal Electronic energy + Delta-G solvation = -20715.707626 eV Core-core repulsion = 17100.330249 eV Total energy + Delta-G solvation = -3615.377376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -49.98643 -41.82980 -39.68562 -37.61552 -35.96438 -35.29528 -34.29328 -32.12364 -30.67104 -30.17263 -25.98541 -25.22584 -24.59790 -23.59115 -21.69396 -19.51131 -18.86457 -18.63149 -18.37956 -17.48169 -17.18812 -16.70539 -16.43652 -16.26545 -15.86803 -15.55565 -15.09264 -14.95991 -14.72383 -14.51242 -14.39334 -14.26940 -14.10655 -13.71816 -13.29599 -12.96292 -12.71991 -12.67780 -12.55480 -12.45453 -12.22036 -11.84831 -11.61574 -11.49923 -11.05582 -10.73307 -10.58824 -10.11444 -9.28629 -8.50850 -8.33190 -6.44961 -0.26334 -0.07092 0.59892 0.83858 1.36452 1.41267 1.41339 1.53861 1.77711 1.96798 2.32381 2.37519 3.02045 3.14050 3.38057 3.52364 3.79550 3.84971 3.95905 4.02788 4.13156 4.46613 4.59307 4.68225 4.77975 4.90201 4.95797 4.96424 5.01205 5.13815 5.16188 5.57999 5.62085 5.90727 6.06857 6.61619 6.82063 7.22659 8.78585 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.002687 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.618749 B =10417.327280 C =10858.743043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.122 0.878 4 S -0.268 6.268 5 C 0.090 3.910 6 C -0.538 4.538 7 H 0.058 0.942 8 C 0.020 3.980 9 N -0.921 5.921 10 Si 0.971 3.029 11 H -0.270 1.270 12 H -0.274 1.274 13 H -0.268 1.268 14 C 0.548 3.452 15 O -0.526 6.526 16 N -0.655 5.655 17 C 0.141 3.859 18 C -0.094 4.094 19 C -0.122 4.122 20 C 0.091 3.909 21 F -0.135 7.135 22 C -0.122 4.122 23 C -0.041 4.041 24 Cl -0.042 7.042 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.018 0.982 29 H 0.026 0.974 30 H 0.271 0.729 31 H 0.427 0.573 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 -0.079 -24.009 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.216 4.216 3 H 0.140 0.860 4 S -0.041 6.041 5 C -0.058 4.058 6 C -0.577 4.577 7 H 0.076 0.924 8 C -0.182 4.182 9 N -0.560 5.560 10 Si 0.795 3.205 11 H -0.195 1.195 12 H -0.199 1.199 13 H -0.193 1.193 14 C 0.335 3.665 15 O -0.401 6.401 16 N -0.302 5.302 17 C 0.045 3.955 18 C -0.114 4.114 19 C -0.142 4.142 20 C 0.071 3.929 21 F -0.113 7.113 22 C -0.141 4.141 23 C -0.070 4.070 24 Cl -0.013 7.013 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.267 0.733 32 H 0.166 0.834 33 H 0.182 0.818 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.346 -1.560 -23.749 23.916 hybrid contribution -0.468 1.517 0.820 1.787 sum 1.878 -0.043 -22.929 23.006 Atomic orbital electron populations 1.21947 0.89263 1.03844 1.04294 1.23196 1.02023 1.03275 0.93128 0.86033 1.87145 1.76059 1.40337 1.00535 1.20833 0.97867 0.94576 0.92481 1.20951 1.36884 1.09327 0.90520 0.92429 1.25806 0.94490 0.95068 1.02811 1.70028 1.39053 1.17525 1.29359 0.85349 0.78404 0.78871 0.77890 1.19518 1.19895 1.19271 1.19977 0.76249 0.86741 0.83549 1.90711 1.48110 1.16568 1.84695 1.43314 1.61497 1.17374 1.08023 1.17640 0.96619 0.93000 0.88249 1.21185 1.00186 0.92862 0.97155 1.21366 0.97281 1.02292 0.93222 1.17486 0.98310 0.90876 0.86265 1.91526 1.84422 1.82919 1.52465 1.20980 1.01803 0.93402 0.97958 1.20434 1.01016 0.87361 0.98218 1.98400 1.94680 1.12150 1.96045 0.88117 0.91672 0.91643 0.96322 0.95555 0.92038 0.73330 0.83383 0.81815 0.81261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.08 71.98 0.65 -2.90 16 2 C -0.08 -2.59 3.18 29.85 0.09 -2.50 16 3 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 4 S -0.27 -11.74 20.38 -56.49 -1.15 -12.89 16 5 C 0.09 4.61 5.39 71.23 0.38 4.99 16 6 C -0.54 -30.46 9.13 25.60 0.23 -30.22 16 7 H 0.06 3.30 7.71 -2.91 -0.02 3.28 16 8 C 0.02 1.08 5.46 84.66 0.46 1.54 16 9 N -0.92 -52.72 13.29 21.45 0.28 -52.44 16 10 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 14 C 0.55 15.76 6.80 87.66 0.60 16.36 16 15 O -0.53 -18.67 13.56 -3.07 -0.04 -18.71 16 16 N -0.65 -13.88 5.05 -303.36 -1.53 -15.42 16 17 C 0.14 2.96 6.31 38.13 0.24 3.20 16 18 C -0.09 -2.00 8.70 22.38 0.19 -1.80 16 19 C -0.12 -2.14 10.02 22.30 0.22 -1.91 16 20 C 0.09 1.56 7.30 22.38 0.16 1.72 16 21 F -0.13 -2.38 17.26 44.97 0.78 -1.61 16 22 C -0.12 -1.93 9.80 22.32 0.22 -1.71 16 23 C -0.04 -0.74 6.34 22.44 0.14 -0.59 16 24 Cl -0.04 -0.68 27.96 -2.72 -0.08 -0.76 16 25 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.06 1.94 6.92 -2.39 -0.02 1.93 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.03 1.38 7.14 -2.39 -0.02 1.37 16 30 H 0.27 14.46 8.31 -92.71 -0.77 13.68 16 31 H 0.43 6.72 8.08 -92.71 -0.75 5.97 16 32 H 0.15 3.60 6.20 -2.91 -0.02 3.58 16 33 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 34 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -65.90 328.89 4.30 -61.60 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.40 Total: 8.64 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 3.61 Total: -13.83 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -1.25 Total: -67.85 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.04 Total: -18.71 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -11.74 SS G_CDS: -1.15 Total: -12.89 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -65.90 4.30 -61.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.597 kcal (2) G-P(sol) polarization free energy of solvation -65.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds