Wall clock time and date at job start Tue Mar 31 2020 11:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48503 * 109.46827 * 30.00102 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00348 * 3 2 1 7 7 C 1.37884 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00016 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 179.97438 * 7 2 1 10 10 S 1.81399 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.81394 * 102.99894 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46854 * 179.97438 * 11 10 9 13 13 N 1.29907 * 124.85541 * 89.72588 * 12 11 10 14 14 C 1.36065 * 108.79761 * 179.83698 * 13 12 11 15 15 C 1.39590 * 133.80387 * 180.09502 * 14 13 12 16 16 C 1.37677 * 119.73129 * 180.35218 * 15 14 13 17 17 C 1.50702 * 119.79116 * 179.97438 * 16 15 14 18 18 F 1.39900 * 109.46636 * 90.00094 * 17 16 15 19 19 F 1.39896 * 109.47096 * 210.00054 * 17 16 15 20 20 F 1.39898 * 109.46968 * 329.99887 * 17 16 15 21 21 C 1.38723 * 120.41919 * 359.97438 * 16 15 14 22 22 C 1.37903 * 120.47973 * 359.97438 * 21 16 15 23 23 C 1.38674 * 119.87338 * 0.04718 * 22 21 16 24 24 O 1.34238 * 124.85804 * 270.02402 * 12 11 10 25 25 H 0.96997 * 120.00125 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09002 * 109.47501 * 299.99574 * 11 10 9 29 29 H 1.08998 * 109.47135 * 60.00434 * 11 10 9 30 30 H 1.08001 * 120.13256 * 0.32720 * 15 14 13 31 31 H 1.08004 * 119.76082 * 180.02562 * 21 16 15 32 32 H 1.07995 * 120.06871 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 16 4.1162 -2.9044 -0.0010 11 6 5.9185 -2.7000 -0.0025 12 6 6.5777 -4.0551 -0.0019 13 7 6.8971 -4.7259 -1.0676 14 6 7.4743 -5.8990 -0.6907 15 6 8.0018 -6.9851 -1.3911 16 6 8.5226 -8.0556 -0.6996 17 6 9.0920 -9.2292 -1.4543 18 9 10.4545 -9.0159 -1.6890 19 9 8.9258 -10.3947 -0.6986 20 9 8.4241 -9.3663 -2.6759 21 6 8.5266 -8.0609 0.6877 22 6 8.0098 -6.9943 1.3927 23 6 7.4808 -5.9079 0.7123 24 8 6.9138 -4.7444 1.0999 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6801 -0.8912 28 1 6.2210 -2.1488 -0.8930 29 1 6.2224 -2.1482 0.8870 30 1 8.0011 -6.9858 -2.4711 31 1 8.9382 -8.9060 1.2194 32 1 8.0166 -7.0052 2.4725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:15 Heat of formation + Delta-G solvation = -112.436614 kcal Electronic energy + Delta-G solvation = -22428.908983 eV Core-core repulsion = 18260.510492 eV Total energy + Delta-G solvation = -4168.398490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.51189 -48.02303 -47.96816 -43.60867 -38.72472 -35.17402 -33.15690 -32.33781 -31.58199 -29.54406 -28.82288 -26.23668 -23.26608 -22.85780 -22.60224 -21.82218 -19.26731 -18.84283 -18.77842 -17.93095 -17.32067 -17.08576 -16.82638 -15.64298 -15.30848 -14.97405 -14.78424 -14.61638 -14.41247 -14.36956 -14.15030 -14.12210 -14.11390 -13.80267 -13.66953 -13.37855 -12.97360 -12.64667 -12.47448 -12.36904 -11.97208 -11.77277 -10.90919 -10.78095 -10.70226 -10.30313 -9.83413 -9.46595 -9.24817 -8.81545 -8.81126 -7.08222 -6.27481 -4.31527 0.17152 0.41783 1.60620 2.07724 2.25207 2.52837 3.01513 3.13565 3.17334 3.21016 3.22343 3.34925 3.48948 3.77725 4.02351 4.04760 4.21672 4.44530 4.49465 4.64507 4.85366 5.01202 5.03268 5.13174 5.34834 5.50985 5.55669 5.70660 5.81040 5.95573 6.39989 6.52052 7.28196 7.29843 8.18689 8.74048 9.26502 10.84334 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.035545 B = 0.002326 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.550052 B =12034.045459 C =12188.585724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.082 3.918 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.085 0.915 9 C 0.046 3.954 10 S -0.225 6.225 11 C -0.030 4.030 12 C 0.296 3.704 13 N -0.463 5.463 14 C 0.025 3.975 15 C -0.004 4.004 16 C -0.188 4.188 17 C 0.516 3.484 18 F -0.175 7.175 19 F -0.174 7.174 20 F -0.174 7.174 21 C -0.058 4.058 22 C -0.084 4.084 23 C 0.035 3.965 24 O -0.200 6.200 25 H 0.270 0.730 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.445 -15.277 1.056 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.123 4.123 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.103 0.897 9 C -0.101 4.101 10 S 0.001 5.999 11 C -0.178 4.178 12 C 0.084 3.916 13 N -0.193 5.193 14 C -0.087 4.087 15 C -0.023 4.023 16 C -0.190 4.190 17 C 0.462 3.538 18 F -0.156 7.156 19 F -0.156 7.156 20 F -0.155 7.155 21 C -0.077 4.077 22 C -0.103 4.103 23 C -0.017 4.017 24 O -0.091 6.091 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 20.615 -15.910 0.421 26.044 hybrid contribution 1.133 1.663 0.535 2.082 sum 21.748 -14.247 0.956 26.016 Atomic orbital electron populations 1.69852 1.06183 1.27492 1.48911 1.24840 0.94770 0.98729 0.93971 0.86798 0.80264 0.83489 0.78917 1.19742 1.20698 1.19003 1.20390 0.86558 0.95455 1.53412 0.89725 1.21553 1.01380 0.87526 0.99689 1.87307 0.95028 1.19569 1.97981 1.21876 0.99602 0.88187 1.08093 1.25613 0.93169 0.94965 0.77844 1.70740 1.16249 1.03906 1.28392 1.19698 1.02880 0.94945 0.91139 1.19968 0.92687 0.88772 1.00921 1.19693 1.08512 0.95863 0.94966 1.18043 0.75966 0.82414 0.77378 1.93241 1.32917 1.94796 1.94661 1.93199 1.95252 1.51244 1.75883 1.93219 1.80346 1.96157 1.45793 1.20678 0.97269 0.98050 0.91682 1.19811 0.99889 0.89652 1.00898 1.20500 0.98780 0.87901 0.94566 1.84589 1.62287 1.26064 1.36176 0.92031 0.94150 0.94497 0.85701 0.86959 0.83169 0.82977 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 3 Si 0.88 19.96 27.47 -169.99 -4.67 15.29 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -5.65 6.54 56.52 0.37 -5.28 16 7 C -0.52 -14.20 9.68 -34.44 -0.33 -14.53 16 8 H 0.08 2.57 7.96 -52.49 -0.42 2.15 16 9 C 0.05 1.03 4.77 36.01 0.17 1.21 16 10 S -0.22 -4.46 21.64 -107.50 -2.33 -6.79 16 11 C -0.03 -0.43 6.57 36.01 0.24 -0.20 16 12 C 0.30 4.45 7.50 -13.09 -0.10 4.35 16 13 N -0.46 -7.24 11.34 -8.70 -0.10 -7.34 16 14 C 0.03 0.35 7.24 -84.71 -0.61 -0.27 16 15 C 0.00 -0.05 9.43 -39.28 -0.37 -0.42 16 16 C -0.19 -1.74 5.45 -104.65 -0.57 -2.31 16 17 C 0.52 4.54 3.36 36.01 0.12 4.66 16 18 F -0.17 -1.59 17.30 2.25 0.04 -1.55 16 19 F -0.17 -1.49 16.44 2.25 0.04 -1.45 16 20 F -0.17 -1.67 16.44 2.25 0.04 -1.63 16 21 C -0.06 -0.46 9.38 -39.52 -0.37 -0.83 16 22 C -0.08 -0.75 10.06 -39.54 -0.40 -1.15 16 23 C 0.03 0.44 7.43 -38.64 -0.29 0.15 16 24 O -0.20 -2.86 10.77 3.62 0.04 -2.82 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.04 0.87 7.20 -51.92 -0.37 0.49 16 27 H 0.04 0.79 7.57 -51.92 -0.39 0.39 16 28 H 0.12 1.63 8.14 -51.92 -0.42 1.20 16 29 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.15 1.46 7.59 -52.49 -0.40 1.07 16 31 H 0.15 0.76 7.58 -52.48 -0.40 0.36 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 312.98 15.07 4.72 4.72 Total: -1.00 -30.34 312.98 -6.48 -36.81 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -2.42 Total: -2.77 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.61 Total: -7.18 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.67 Total: -32.64 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.11 Total: -4.63 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.29 kcal Atomic # 16 Polarization: -4.46 SS G_CDS: -2.33 Total: -6.79 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.34 -6.48 -36.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.622 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds