Wall clock time and date at job start Tue Mar 31 2020 11:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48503 * 109.46827 * 30.00102 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00348 * 3 2 1 7 7 C 1.37884 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00016 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 179.97438 * 7 2 1 10 10 S 1.81399 * 109.47147 * 179.97438 * 9 7 2 11 11 C 1.81394 * 102.99894 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46854 * 179.97438 * 11 10 9 13 13 N 1.29907 * 124.85541 * 89.72588 * 12 11 10 14 14 C 1.36065 * 108.79761 * 179.83698 * 13 12 11 15 15 C 1.39590 * 133.80387 * 180.09502 * 14 13 12 16 16 C 1.37677 * 119.73129 * 180.35218 * 15 14 13 17 17 C 1.50702 * 119.79116 * 179.97438 * 16 15 14 18 18 F 1.39900 * 109.46636 * 90.00094 * 17 16 15 19 19 F 1.39896 * 109.47096 * 210.00054 * 17 16 15 20 20 F 1.39898 * 109.46968 * 329.99887 * 17 16 15 21 21 C 1.38723 * 120.41919 * 359.97438 * 16 15 14 22 22 C 1.37903 * 120.47973 * 359.97438 * 21 16 15 23 23 C 1.38674 * 119.87338 * 0.04718 * 22 21 16 24 24 O 1.34238 * 124.85804 * 270.02402 * 12 11 10 25 25 H 0.96997 * 120.00125 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 27 27 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 28 28 H 1.09002 * 109.47501 * 299.99574 * 11 10 9 29 29 H 1.08998 * 109.47135 * 60.00434 * 11 10 9 30 30 H 1.08001 * 120.13256 * 0.32720 * 15 14 13 31 31 H 1.08004 * 119.76082 * 180.02562 * 21 16 15 32 32 H 1.07995 * 120.06871 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 16 4.1162 -2.9044 -0.0010 11 6 5.9185 -2.7000 -0.0025 12 6 6.5777 -4.0551 -0.0019 13 7 6.8971 -4.7259 -1.0676 14 6 7.4743 -5.8990 -0.6907 15 6 8.0018 -6.9851 -1.3911 16 6 8.5226 -8.0556 -0.6996 17 6 9.0920 -9.2292 -1.4543 18 9 10.4545 -9.0159 -1.6890 19 9 8.9258 -10.3947 -0.6986 20 9 8.4241 -9.3663 -2.6759 21 6 8.5266 -8.0609 0.6877 22 6 8.0098 -6.9943 1.3927 23 6 7.4808 -5.9079 0.7123 24 8 6.9138 -4.7444 1.0999 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6801 -0.8912 28 1 6.2210 -2.1488 -0.8930 29 1 6.2224 -2.1482 0.8870 30 1 8.0011 -6.9858 -2.4711 31 1 8.9382 -8.9060 1.2194 32 1 8.0166 -7.0052 2.4725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:14 Heat of formation + Delta-G solvation = -131.887396 kcal Electronic energy + Delta-G solvation = -22429.752432 eV Core-core repulsion = 18260.510492 eV Total energy + Delta-G solvation = -4169.241940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.22992 -48.74155 -48.68485 -44.58364 -39.53909 -36.19096 -35.20870 -33.28129 -32.43152 -31.47745 -29.81656 -27.04137 -24.83214 -23.80661 -23.72008 -22.90366 -20.09348 -19.55597 -19.53138 -19.12472 -18.74866 -18.29849 -17.93516 -17.09612 -16.17468 -16.16372 -15.70857 -15.57890 -15.41430 -15.22169 -15.12445 -15.11182 -14.96207 -14.84779 -14.82933 -14.48910 -14.30060 -14.01946 -13.84308 -13.23131 -12.94422 -12.79980 -12.63556 -12.23403 -12.15720 -11.78172 -11.76849 -10.92142 -10.85549 -10.30071 -9.74142 -8.65893 -8.36647 -6.47844 -0.74843 -0.41172 0.41485 1.12995 1.36979 1.39388 1.42751 1.49956 1.50316 1.77436 2.14231 2.31174 2.35716 2.65979 2.96990 2.97145 3.16812 3.33044 3.61005 3.73112 3.81314 4.00608 4.09659 4.21431 4.44255 4.60419 4.67843 4.76108 4.81785 4.86982 4.89080 5.20178 5.31761 6.05871 6.27362 6.56748 7.14738 8.79312 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.035545 B = 0.002326 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.550052 B =12034.045459 C =12188.585724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.019 3.981 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.235 1.235 7 C -0.534 4.534 8 H 0.033 0.967 9 C 0.052 3.948 10 S -0.275 6.275 11 C -0.007 4.007 12 C 0.278 3.722 13 N -0.483 5.483 14 C -0.007 4.007 15 C -0.012 4.012 16 C -0.183 4.183 17 C 0.523 3.477 18 F -0.175 7.175 19 F -0.169 7.169 20 F -0.180 7.180 21 C -0.040 4.040 22 C -0.079 4.079 23 C 0.020 3.980 24 O -0.208 6.208 25 H 0.273 0.727 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.155 0.845 31 H 0.190 0.810 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.628 -15.498 1.934 29.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.181 4.181 3 Si 0.777 3.223 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.158 1.158 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.095 4.095 10 S -0.049 6.049 11 C -0.155 4.155 12 C 0.066 3.934 13 N -0.213 5.213 14 C -0.118 4.118 15 C -0.031 4.031 16 C -0.186 4.186 17 C 0.469 3.531 18 F -0.156 7.156 19 F -0.150 7.150 20 F -0.161 7.161 21 C -0.058 4.058 22 C -0.098 4.098 23 C -0.032 4.032 24 O -0.099 6.099 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.159 0.841 30 H 0.172 0.828 31 H 0.207 0.793 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 23.812 -16.158 1.303 28.806 hybrid contribution 0.227 1.442 0.247 1.481 sum 24.039 -14.716 1.550 28.228 Atomic orbital electron populations 1.70024 1.08506 1.28871 1.50623 1.25938 0.95669 1.03389 0.93144 0.85590 0.79745 0.77284 0.79664 1.18688 1.20636 1.15808 1.20625 0.89510 0.93779 1.53318 0.94883 1.21327 0.98027 0.89301 1.00885 1.87382 1.00915 1.18408 1.98196 1.21836 0.94438 0.88784 1.10444 1.25511 0.94420 0.95325 0.78143 1.70646 1.16449 1.04965 1.29242 1.19962 1.04449 0.95234 0.92170 1.20099 0.92903 0.88760 1.01378 1.19847 1.07677 0.95317 0.95787 1.17901 0.75806 0.82302 0.77115 1.93246 1.32900 1.94807 1.94651 1.93213 1.95222 1.50922 1.75690 1.93214 1.80492 1.96174 1.46221 1.21160 0.95203 0.98413 0.91061 1.20280 0.98618 0.88355 1.02517 1.21025 0.99307 0.88227 0.94620 1.84547 1.62676 1.26731 1.35947 0.91808 0.92507 0.92923 0.83918 0.84128 0.82753 0.79301 0.80175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 2 C 0.02 1.04 5.47 84.66 0.46 1.50 16 3 Si 0.96 40.51 27.47 68.60 1.88 42.40 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.24 -8.76 6.54 99.48 0.65 -8.11 16 7 C -0.53 -30.09 9.68 25.60 0.25 -29.84 16 8 H 0.03 2.14 7.96 -2.91 -0.02 2.11 16 9 C 0.05 2.31 4.77 71.24 0.34 2.65 16 10 S -0.27 -10.98 21.64 -56.49 -1.22 -12.20 16 11 C -0.01 -0.20 6.57 71.24 0.47 0.26 16 12 C 0.28 8.17 7.50 88.39 0.66 8.84 16 13 N -0.48 -15.00 11.34 -296.25 -3.36 -18.36 16 14 C -0.01 -0.18 7.24 39.32 0.28 0.11 16 15 C -0.01 -0.26 9.43 22.46 0.21 -0.05 16 16 C -0.18 -2.98 5.45 -19.88 -0.11 -3.09 16 17 C 0.52 7.99 3.36 71.24 0.24 8.23 16 18 F -0.17 -2.77 17.30 44.97 0.78 -2.00 16 19 F -0.17 -2.39 16.44 44.97 0.74 -1.65 16 20 F -0.18 -3.19 16.44 44.97 0.74 -2.45 16 21 C -0.04 -0.49 9.38 22.31 0.21 -0.28 16 22 C -0.08 -1.19 10.06 22.29 0.22 -0.96 16 23 C 0.02 0.47 7.43 22.88 0.17 0.64 16 24 O -0.21 -5.75 10.77 -9.98 -0.11 -5.85 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.06 2.31 7.20 -2.39 -0.02 2.29 16 27 H 0.05 2.15 7.57 -2.39 -0.02 2.13 16 28 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.15 2.96 7.59 -2.91 -0.02 2.94 16 31 H 0.19 0.93 7.58 -2.91 -0.02 0.91 16 32 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -69.65 312.98 4.29 -65.36 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.13 Total: 3.73 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 3.41 Total: -11.99 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -3.06 Total: -75.35 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.11 Total: -5.85 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 2.26 Total: -6.09 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.88 Total: 42.40 kcal Atomic # 16 Polarization: -10.98 SS G_CDS: -1.22 Total: -12.20 kcal Total: -69.65 4.29 -65.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.528 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds