Wall clock time and date at job start Tue Mar 31 2020 11:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47119 * 2 1 4 4 S 1.81398 * 109.47148 * 239.99800 * 2 1 3 5 5 C 1.81403 * 102.99955 * 65.00009 * 4 2 1 6 6 C 1.50703 * 109.47108 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00210 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99740 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00334 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99604 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47189 * 89.99859 * 10 8 6 12 12 H 1.48510 * 109.46953 * 209.99457 * 10 8 6 13 13 H 1.48497 * 109.47295 * 329.99359 * 10 8 6 14 14 C 1.50698 * 109.47257 * 119.99882 * 2 1 3 15 15 O 1.21294 * 120.00309 * 99.99935 * 14 2 1 16 16 N 1.34771 * 120.00156 * 280.00279 * 14 2 1 17 17 C 1.40044 * 120.00238 * 175.54535 * 16 14 2 18 18 C 1.38796 * 120.07292 * 34.63197 * 17 16 14 19 19 C 1.38247 * 119.94552 * 179.74237 * 18 17 16 20 20 Cl 1.73595 * 119.96099 * 180.27723 * 19 18 17 21 21 C 1.38397 * 120.07995 * 0.51123 * 19 18 17 22 22 C 1.38249 * 120.14549 * 359.76744 * 21 19 18 23 23 C 1.38305 * 120.05691 * 359.97438 * 22 21 19 24 24 F 1.35106 * 120.04320 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.46935 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46666 * 299.99628 * 1 2 3 27 27 H 1.08997 * 109.46957 * 60.00472 * 1 2 3 28 28 H 1.08998 * 109.47300 * 299.99939 * 5 4 2 29 29 H 1.08996 * 109.47006 * 60.00193 * 5 4 2 30 30 H 0.97001 * 120.00141 * 180.02562 * 9 8 6 31 31 H 0.97003 * 120.00246 * 355.54527 * 16 14 2 32 32 H 1.08007 * 120.02720 * 359.97438 * 18 17 16 33 33 H 1.08005 * 119.92724 * 179.74483 * 21 19 18 34 34 H 1.08004 * 119.97246 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1347 -0.8552 -1.4811 5 6 1.5665 0.2152 -2.8309 6 6 1.9974 -0.3697 -4.1512 7 1 2.5575 -1.2928 -4.1759 8 6 1.6775 0.2743 -5.3277 9 7 0.9959 1.3986 -5.2977 10 14 2.2123 -0.4504 -6.9642 11 1 1.1574 -1.3660 -7.4686 12 1 2.4270 0.6448 -7.9440 13 1 3.4775 -1.2059 -6.7813 14 6 2.0324 -0.7104 1.2304 15 8 2.4065 -1.8617 1.1558 16 7 2.0659 -0.0664 2.4139 17 6 2.4439 -0.7532 3.5744 18 6 3.4089 -1.7488 3.5102 19 6 3.7839 -2.4214 4.6583 20 17 4.9958 -3.6617 4.5797 21 6 3.1908 -2.1104 5.8694 22 6 2.2251 -1.1233 5.9365 23 6 1.8494 -0.4430 4.7924 24 9 0.9053 0.5212 4.8582 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.4793 0.2881 -2.8038 29 1 2.0002 1.2084 -2.7142 30 1 0.7705 1.8514 -6.1254 31 1 1.8282 0.8728 2.4619 32 1 3.8690 -1.9953 2.5646 33 1 3.4827 -2.6403 6.7642 34 1 1.7638 -0.8832 6.8830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017670.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:06 Heat of formation + Delta-G solvation = -67.148433 kcal Electronic energy + Delta-G solvation = -20820.426816 eV Core-core repulsion = 17205.788848 eV Total energy + Delta-G solvation = -3614.637967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 3.30 seconds Orbital eigenvalues (eV) -49.28013 -40.69766 -38.79766 -36.72968 -34.98717 -33.30214 -33.05004 -30.84245 -29.72059 -28.53089 -25.00071 -23.59461 -23.17072 -22.66739 -20.65197 -18.70750 -17.62117 -17.44006 -16.63928 -16.47648 -16.00554 -15.81232 -15.33411 -15.14094 -14.59482 -14.35426 -14.09973 -13.74750 -13.57061 -13.37978 -12.90354 -12.61109 -12.41466 -12.33802 -12.16170 -11.76023 -11.67046 -11.61401 -11.26337 -10.89062 -10.73605 -10.64555 -9.97107 -9.86779 -9.60873 -9.10478 -8.83324 -8.64331 -8.53195 -6.74729 -6.23091 -4.27057 0.53616 0.73417 1.77568 2.12821 2.42934 2.87904 3.12630 3.25221 3.30959 3.36553 3.73014 3.75928 4.26332 4.33513 4.55238 4.60904 4.81526 4.97091 5.04718 5.14578 5.19533 5.31230 5.57947 5.63651 5.65437 5.84861 5.87588 5.90774 6.24964 6.44367 7.00763 7.02983 7.05321 7.72046 7.91440 7.97082 8.74988 9.36388 10.88277 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.002811 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.832258 B = 9956.972709 C =11103.303808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.103 0.897 4 S -0.231 6.231 5 C 0.078 3.922 6 C -0.512 4.512 7 H 0.068 0.932 8 C 0.066 3.934 9 N -0.893 5.893 10 Si 0.907 3.093 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.270 1.270 14 C 0.540 3.460 15 O -0.490 6.490 16 N -0.672 5.672 17 C 0.138 3.862 18 C -0.089 4.089 19 C -0.026 4.026 20 Cl -0.056 7.056 21 C -0.102 4.102 22 C -0.123 4.123 23 C 0.073 3.927 24 F -0.132 7.132 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.266 0.734 31 H 0.417 0.583 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 -1.805 23.972 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.228 4.228 3 H 0.121 0.879 4 S -0.004 6.004 5 C -0.069 4.069 6 C -0.551 4.551 7 H 0.086 0.914 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.327 3.673 15 O -0.361 6.361 16 N -0.319 5.319 17 C 0.041 3.959 18 C -0.110 4.110 19 C -0.053 4.053 20 Cl -0.027 7.027 21 C -0.122 4.122 22 C -0.142 4.142 23 C 0.051 3.949 24 F -0.111 7.111 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.253 0.747 32 H 0.181 0.819 33 H 0.162 0.838 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.765 -3.507 23.643 24.061 hybrid contribution -0.727 1.566 -0.776 1.893 sum 2.038 -1.941 22.867 23.040 Atomic orbital electron populations 1.21987 0.90973 1.03870 1.03001 1.23161 1.00710 1.03177 0.95776 0.87898 1.87221 1.75242 1.39794 0.98162 1.21201 0.98985 0.95038 0.91702 1.20635 1.36479 1.09300 0.88707 0.91405 1.24946 0.94741 0.94759 0.99306 1.69945 1.38491 1.16525 1.28159 0.86348 0.79316 0.78712 0.82288 1.20301 1.20974 1.19482 1.20324 0.76865 0.86845 0.83283 1.90729 1.44075 1.16881 1.84419 1.43485 1.68442 1.14458 1.05514 1.17564 0.95817 0.97009 0.85497 1.21196 0.95205 0.95105 0.99527 1.20766 0.95360 0.94638 0.94579 1.98392 1.53825 1.51811 1.98692 1.20882 0.96375 0.97888 0.97015 1.20901 0.98992 0.96710 0.97632 1.17531 0.91300 0.92167 0.93864 1.91511 1.61870 1.60664 1.97030 0.90944 0.92392 0.90140 0.94306 0.94657 0.92478 0.74654 0.81890 0.83816 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.08 37.16 0.34 -1.67 16 2 C -0.10 -1.55 3.18 -27.88 -0.09 -1.64 16 3 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 4 S -0.23 -5.02 20.32 -107.50 -2.18 -7.20 16 5 C 0.08 1.95 5.39 36.01 0.19 2.14 16 6 C -0.51 -14.23 9.13 -34.44 -0.31 -14.54 16 7 H 0.07 1.91 7.71 -52.49 -0.40 1.50 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 9 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 10 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 C 0.54 8.28 6.85 -10.99 -0.08 8.20 16 15 O -0.49 -9.05 13.46 5.55 0.07 -8.98 16 16 N -0.67 -7.95 5.23 -9.81 -0.05 -8.00 16 17 C 0.14 1.61 6.31 -83.60 -0.53 1.09 16 18 C -0.09 -1.11 8.48 -39.37 -0.33 -1.44 16 19 C -0.03 -0.27 6.32 -39.52 -0.25 -0.52 16 20 Cl -0.06 -0.58 28.95 -51.86 -1.50 -2.08 16 21 C -0.10 -0.82 9.82 -39.52 -0.39 -1.21 16 22 C -0.12 -0.96 10.02 -39.55 -0.40 -1.36 16 23 C 0.07 0.73 7.31 -39.26 -0.29 0.45 16 24 F -0.13 -1.33 16.96 2.25 0.04 -1.29 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.25 6.92 -51.93 -0.36 0.89 16 28 H 0.04 0.99 7.14 -51.93 -0.37 0.62 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.42 3.78 8.67 -40.82 -0.35 3.43 16 32 H 0.16 2.35 6.20 -52.48 -0.33 2.03 16 33 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -30.79 330.04 -8.65 -39.44 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -3.49 Total: 0.41 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.23 Total: -8.77 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.69 Total: -32.70 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.07 Total: -8.98 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -2.18 Total: -7.20 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.79 -8.65 -39.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017670.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.712 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds