Wall clock time and date at job start Tue Mar 31 2020 11:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47119 * 2 1 4 4 S 1.81398 * 109.47148 * 239.99800 * 2 1 3 5 5 C 1.81403 * 102.99955 * 65.00009 * 4 2 1 6 6 C 1.50703 * 109.47108 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00210 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99740 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00334 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99604 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47189 * 89.99859 * 10 8 6 12 12 H 1.48510 * 109.46953 * 209.99457 * 10 8 6 13 13 H 1.48497 * 109.47295 * 329.99359 * 10 8 6 14 14 C 1.50698 * 109.47257 * 119.99882 * 2 1 3 15 15 O 1.21294 * 120.00309 * 99.99935 * 14 2 1 16 16 N 1.34771 * 120.00156 * 280.00279 * 14 2 1 17 17 C 1.40044 * 120.00238 * 175.54535 * 16 14 2 18 18 C 1.38796 * 120.07292 * 34.63197 * 17 16 14 19 19 C 1.38247 * 119.94552 * 179.74237 * 18 17 16 20 20 Cl 1.73595 * 119.96099 * 180.27723 * 19 18 17 21 21 C 1.38397 * 120.07995 * 0.51123 * 19 18 17 22 22 C 1.38249 * 120.14549 * 359.76744 * 21 19 18 23 23 C 1.38305 * 120.05691 * 359.97438 * 22 21 19 24 24 F 1.35106 * 120.04320 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.46935 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46666 * 299.99628 * 1 2 3 27 27 H 1.08997 * 109.46957 * 60.00472 * 1 2 3 28 28 H 1.08998 * 109.47300 * 299.99939 * 5 4 2 29 29 H 1.08996 * 109.47006 * 60.00193 * 5 4 2 30 30 H 0.97001 * 120.00141 * 180.02562 * 9 8 6 31 31 H 0.97003 * 120.00246 * 355.54527 * 16 14 2 32 32 H 1.08007 * 120.02720 * 359.97438 * 18 17 16 33 33 H 1.08005 * 119.92724 * 179.74483 * 21 19 18 34 34 H 1.08004 * 119.97246 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1347 -0.8552 -1.4811 5 6 1.5665 0.2152 -2.8309 6 6 1.9974 -0.3697 -4.1512 7 1 2.5575 -1.2928 -4.1759 8 6 1.6775 0.2743 -5.3277 9 7 0.9959 1.3986 -5.2977 10 14 2.2123 -0.4504 -6.9642 11 1 1.1574 -1.3660 -7.4686 12 1 2.4270 0.6448 -7.9440 13 1 3.4775 -1.2059 -6.7813 14 6 2.0324 -0.7104 1.2304 15 8 2.4065 -1.8617 1.1558 16 7 2.0659 -0.0664 2.4139 17 6 2.4439 -0.7532 3.5744 18 6 3.4089 -1.7488 3.5102 19 6 3.7839 -2.4214 4.6583 20 17 4.9958 -3.6617 4.5797 21 6 3.1908 -2.1104 5.8694 22 6 2.2251 -1.1233 5.9365 23 6 1.8494 -0.4430 4.7924 24 9 0.9053 0.5212 4.8582 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.4793 0.2881 -2.8038 29 1 2.0002 1.2084 -2.7142 30 1 0.7705 1.8514 -6.1254 31 1 1.8282 0.8728 2.4619 32 1 3.8690 -1.9953 2.5646 33 1 3.4827 -2.6403 6.7642 34 1 1.7638 -0.8832 6.8830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017670.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:59 Heat of formation + Delta-G solvation = -84.683498 kcal Electronic energy + Delta-G solvation = -20821.187193 eV Core-core repulsion = 17205.788848 eV Total energy + Delta-G solvation = -3615.398345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -50.05157 -41.75575 -39.71869 -37.54679 -36.03414 -35.30693 -34.38377 -31.63666 -30.73535 -30.45741 -26.14140 -25.23984 -24.46315 -23.54512 -21.77300 -19.67299 -18.74306 -18.52306 -18.27132 -17.42874 -17.28888 -16.85344 -16.52723 -16.38188 -16.19647 -15.32285 -15.16226 -14.98312 -14.60719 -14.46797 -14.37839 -14.27472 -13.80248 -13.61024 -13.31435 -13.06234 -12.89291 -12.71480 -12.59673 -12.51419 -12.06940 -11.86601 -11.60537 -11.54565 -11.06035 -10.74202 -10.60272 -9.91994 -9.38419 -8.52996 -8.34033 -6.46021 -0.25928 -0.04954 0.63784 1.00820 1.26478 1.40247 1.40752 1.53051 1.77422 1.95226 2.32380 2.36763 2.97188 3.01081 3.36835 3.59249 3.77542 3.92115 3.93193 3.99659 4.21209 4.54089 4.56738 4.64148 4.80885 4.92789 4.93274 4.94839 5.05497 5.08042 5.10919 5.56994 5.61278 5.89549 6.03330 6.60491 6.79640 7.21676 8.77759 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.002811 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.832258 B = 9956.972709 C =11103.303808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.126 0.874 4 S -0.267 6.267 5 C 0.089 3.911 6 C -0.538 4.538 7 H 0.057 0.943 8 C 0.020 3.980 9 N -0.921 5.921 10 Si 0.972 3.028 11 H -0.269 1.269 12 H -0.274 1.274 13 H -0.269 1.269 14 C 0.545 3.455 15 O -0.527 6.527 16 N -0.655 5.655 17 C 0.116 3.884 18 C -0.108 4.108 19 C -0.035 4.035 20 Cl -0.060 7.060 21 C -0.087 4.087 22 C -0.108 4.108 23 C 0.076 3.924 24 F -0.131 7.131 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.025 0.975 29 H 0.019 0.981 30 H 0.271 0.729 31 H 0.430 0.570 32 H 0.135 0.865 33 H 0.176 0.824 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 -1.504 26.301 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.215 4.215 3 H 0.144 0.856 4 S -0.040 6.040 5 C -0.058 4.058 6 C -0.577 4.577 7 H 0.075 0.925 8 C -0.182 4.182 9 N -0.560 5.560 10 Si 0.795 3.205 11 H -0.195 1.195 12 H -0.198 1.198 13 H -0.193 1.193 14 C 0.331 3.669 15 O -0.402 6.402 16 N -0.303 5.303 17 C 0.020 3.980 18 C -0.130 4.130 19 C -0.063 4.063 20 Cl -0.031 7.031 21 C -0.106 4.106 22 C -0.127 4.127 23 C 0.054 3.946 24 F -0.109 7.109 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.270 0.730 32 H 0.153 0.847 33 H 0.194 0.806 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.369 -3.176 26.004 26.304 hybrid contribution -0.605 1.486 -1.286 2.056 sum 1.764 -1.690 24.717 24.838 Atomic orbital electron populations 1.21932 0.89442 1.03603 1.04278 1.23195 1.01868 1.03423 0.93045 0.85620 1.87181 1.75949 1.40414 1.00479 1.20842 0.97825 0.94629 0.92506 1.20949 1.36939 1.09324 0.90512 0.92450 1.25808 0.94496 0.95037 1.02824 1.70028 1.39086 1.17490 1.29365 0.85344 0.78973 0.78242 0.77916 1.19470 1.19843 1.19303 1.20059 0.76622 0.86268 0.83914 1.90728 1.45982 1.18470 1.85035 1.43171 1.67444 1.14964 1.04678 1.17662 0.96801 0.97713 0.85858 1.21017 0.96300 0.96406 0.99228 1.20910 0.95719 0.94622 0.95019 1.98390 1.54057 1.51963 1.98735 1.21263 0.95101 0.97255 0.96945 1.21324 0.97952 0.95229 0.98214 1.17629 0.91071 0.92218 0.93690 1.91520 1.61783 1.60640 1.96998 0.92029 0.88284 0.91487 0.95648 0.96230 0.92013 0.73005 0.84748 0.80641 0.79715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.08 71.98 0.65 -3.09 16 2 C -0.08 -2.66 3.18 29.85 0.09 -2.57 16 3 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 4 S -0.27 -11.98 20.32 -56.49 -1.15 -13.13 16 5 C 0.09 4.64 5.39 71.24 0.38 5.03 16 6 C -0.54 -30.80 9.13 25.60 0.23 -30.57 16 7 H 0.06 3.33 7.71 -2.91 -0.02 3.31 16 8 C 0.02 1.09 5.46 84.65 0.46 1.56 16 9 N -0.92 -53.10 13.29 21.45 0.28 -52.81 16 10 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 C 0.54 16.63 6.85 87.66 0.60 17.23 16 15 O -0.53 -20.08 13.46 -3.07 -0.04 -20.12 16 16 N -0.65 -14.77 5.23 -303.34 -1.59 -16.36 16 17 C 0.12 2.57 6.31 38.16 0.24 2.81 16 18 C -0.11 -2.67 8.48 22.41 0.19 -2.48 16 19 C -0.04 -0.69 6.32 22.31 0.14 -0.55 16 20 Cl -0.06 -1.20 28.95 -2.72 -0.08 -1.28 16 21 C -0.09 -1.10 9.82 22.31 0.22 -0.88 16 22 C -0.11 -1.26 10.02 22.29 0.22 -1.04 16 23 C 0.08 1.30 7.31 22.48 0.16 1.46 16 24 F -0.13 -2.22 16.96 44.97 0.76 -1.45 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.07 2.08 6.92 -2.39 -0.02 2.06 16 28 H 0.03 1.35 7.14 -2.39 -0.02 1.34 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.43 6.97 8.67 -92.71 -0.80 6.16 16 32 H 0.13 4.11 6.20 -2.91 -0.02 4.09 16 33 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -69.00 330.04 4.18 -64.82 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.35 Total: 7.65 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 3.61 Total: -13.09 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.30 Total: -69.17 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.04 Total: -20.12 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.76 Total: -1.45 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -11.98 SS G_CDS: -1.15 Total: -13.13 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -69.00 4.18 -64.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017670.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.862 kcal (2) G-P(sol) polarization free energy of solvation -68.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds