Wall clock time and date at job start Tue Mar 31 2020 11:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46953 * 2 1 4 4 O 1.42901 * 109.47334 * 119.99834 * 2 1 3 5 5 C 1.35929 * 117.00169 * 275.00760 * 4 2 1 6 6 C 1.38725 * 120.05036 * 5.48523 * 5 4 2 7 7 C 1.38154 * 119.97841 * 180.02562 * 6 5 4 8 8 C 1.38261 * 120.09076 * 359.97438 * 7 6 5 9 9 C 1.38366 * 120.10574 * 359.97438 * 8 7 6 10 10 Cl 1.73592 * 119.99031 * 179.97438 * 9 8 7 11 11 C 1.38371 * 120.01324 * 0.27254 * 9 8 7 12 12 Cl 1.73597 * 120.03870 * 179.72186 * 11 9 8 13 13 C 1.50692 * 109.47223 * 240.00196 * 2 1 3 14 14 O 1.21287 * 119.99789 * 244.99860 * 13 2 1 15 15 N 1.34773 * 120.00288 * 64.99692 * 13 2 1 16 16 C 1.46503 * 120.00234 * 180.02562 * 15 13 2 17 17 C 1.50703 * 109.47109 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00077 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00170 * 179.97438 * 17 16 15 20 20 N 1.31505 * 120.00674 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99618 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47370 * 89.99568 * 21 19 17 23 23 H 1.48500 * 109.46665 * 209.99650 * 21 19 17 24 24 H 1.48498 * 109.47197 * 329.99422 * 21 19 17 25 25 H 1.09004 * 109.47036 * 300.00122 * 1 2 3 26 26 H 1.08998 * 109.46933 * 60.00174 * 1 2 3 27 27 H 1.08994 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.01263 * 359.97438 * 6 5 4 29 29 H 1.08004 * 119.95372 * 179.97438 * 7 6 5 30 30 H 1.07995 * 119.95011 * 180.02562 * 8 7 6 31 31 H 0.96998 * 119.99818 * 0.02562 * 15 13 2 32 32 H 1.08993 * 109.46961 * 299.99702 * 16 15 13 33 33 H 1.08996 * 109.46991 * 60.00306 * 16 15 13 34 34 H 0.96993 * 120.00720 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1125 0.0627 2.3044 6 6 1.6592 1.3736 2.3282 7 6 1.7682 2.1209 3.4851 8 6 2.3281 1.5638 4.6199 9 6 2.7805 0.2563 4.6005 10 17 3.4836 -0.4398 6.0269 11 6 2.6781 -0.4944 3.4427 12 17 3.2520 -2.1325 3.4155 13 6 2.0324 -0.7103 -1.2304 14 8 2.6531 -1.7466 -1.1214 15 7 1.7919 -0.1942 -2.4519 16 6 2.2798 -0.8850 -3.6482 17 6 1.8806 -0.1070 -4.8755 18 1 1.3200 0.8106 -4.7746 19 6 2.2321 -0.5660 -6.1273 20 7 1.8842 0.1131 -7.1983 21 14 3.2024 -2.1527 -6.3017 22 1 2.2633 -3.2970 -6.4183 23 1 4.0509 -2.0827 -7.5185 24 1 4.0645 -2.3396 -5.1072 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 1.2220 1.8102 1.4425 29 1 1.4156 3.1415 3.5031 30 1 2.4119 2.1499 5.5232 31 1 1.2958 0.6348 -2.5391 32 1 3.3660 -0.9636 -3.6047 33 1 1.8448 -1.8834 -3.6939 34 1 2.1311 -0.2099 -8.0789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427607241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:36 Heat of formation + Delta-G solvation = -82.809479 kcal Electronic energy + Delta-G solvation = -21202.610287 eV Core-core repulsion = 17572.876710 eV Total energy + Delta-G solvation = -3629.733577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.80064 -40.45326 -38.79799 -37.49745 -37.36573 -36.23304 -34.56755 -33.23663 -31.61607 -30.87640 -29.77696 -25.98481 -24.49193 -23.89858 -23.15106 -21.46377 -19.70106 -19.33608 -18.21910 -17.56500 -17.12202 -16.98380 -16.81854 -16.15006 -16.11619 -15.90189 -15.21081 -15.00957 -14.79208 -14.47965 -14.33463 -14.10012 -13.47809 -13.25040 -13.09786 -13.01722 -12.91632 -12.73892 -12.57372 -12.32568 -12.15407 -11.96060 -11.95546 -11.80302 -11.66415 -10.92890 -10.83844 -10.03621 -9.84636 -9.37790 -8.40629 -6.47193 -0.15010 0.09548 0.72205 1.20630 1.31455 1.34891 1.46356 1.53318 1.61000 2.27055 2.40255 2.60522 2.95076 3.50105 3.70130 3.78525 3.83603 3.88357 3.92966 4.23349 4.27657 4.62583 4.65666 4.77439 4.87915 4.99445 5.03633 5.12696 5.21725 5.23439 5.40145 5.43000 6.01971 6.12856 6.52943 6.73261 7.13156 7.30030 8.73636 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.026825 B = 0.002849 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.563279 B = 9827.127602 C =10538.137823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.134 0.866 4 O -0.300 6.300 5 C 0.133 3.867 6 C -0.194 4.194 7 C -0.046 4.046 8 C -0.134 4.134 9 C -0.006 4.006 10 Cl -0.048 7.048 11 C -0.095 4.095 12 Cl -0.060 7.060 13 C 0.501 3.499 14 O -0.582 6.582 15 N -0.693 5.693 16 C 0.232 3.768 17 C -0.543 4.543 18 H 0.067 0.933 19 C 0.031 3.969 20 N -0.928 5.928 21 Si 0.930 3.070 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.263 1.263 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.172 0.828 29 H 0.185 0.815 30 H 0.170 0.830 31 H 0.414 0.586 32 H 0.012 0.988 33 H 0.012 0.988 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 7.591 26.321 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.014 3.986 3 H 0.152 0.848 4 O -0.213 6.213 5 C 0.086 3.914 6 C -0.213 4.213 7 C -0.064 4.064 8 C -0.152 4.152 9 C -0.034 4.034 10 Cl -0.018 7.018 11 C -0.123 4.123 12 Cl -0.031 7.031 13 C 0.287 3.713 14 O -0.462 6.462 15 N -0.344 5.344 16 C 0.108 3.892 17 C -0.581 4.581 18 H 0.085 0.915 19 C -0.170 4.170 20 N -0.567 5.567 21 Si 0.754 3.246 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.188 1.188 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.189 0.811 29 H 0.202 0.798 30 H 0.188 0.812 31 H 0.251 0.749 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.264 6.435 26.258 27.129 hybrid contribution 0.477 -0.906 -0.655 1.216 sum -1.787 5.528 25.603 26.254 Atomic orbital electron populations 1.22369 0.89896 1.04311 1.06144 1.22406 0.97510 0.97356 0.81327 0.84829 1.86280 1.81003 1.37745 1.16245 1.18839 0.95500 0.91642 0.85443 1.21802 1.05127 0.91716 1.02648 1.21507 0.93758 1.01373 0.89740 1.21382 1.00333 0.91733 1.01801 1.20721 1.00947 0.94727 0.86976 1.98392 1.82260 1.84715 1.36479 1.20219 1.08890 0.88949 0.94262 1.98386 1.87474 1.18563 1.98680 1.20815 0.79766 0.85366 0.85342 1.90697 1.42471 1.25795 1.87229 1.45828 1.56220 1.27728 1.04621 1.19143 0.94234 0.92836 0.82964 1.21242 1.36950 1.10032 0.89892 0.91494 1.25504 0.96125 1.00001 0.95396 1.69951 1.47176 1.40698 0.98838 0.85965 0.79754 0.80415 0.78419 1.19095 1.19860 1.18755 0.87845 0.87958 0.92348 0.81108 0.79764 0.81204 0.74942 0.96970 0.97010 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.13 71.98 0.66 -2.40 16 2 C 0.07 1.79 2.63 29.85 0.08 1.87 16 3 H 0.13 2.28 6.31 -2.38 -0.02 2.26 16 4 O -0.30 -8.79 8.80 -73.76 -0.65 -9.44 16 5 C 0.13 3.07 6.59 22.52 0.15 3.22 16 6 C -0.19 -2.73 8.24 22.37 0.18 -2.54 16 7 C -0.05 -0.43 10.04 22.26 0.22 -0.20 16 8 C -0.13 -1.63 9.83 22.31 0.22 -1.41 16 9 C -0.01 -0.12 6.32 22.33 0.14 0.03 16 10 Cl -0.05 -0.90 27.96 -2.72 -0.08 -0.97 16 11 C -0.10 -2.34 6.34 22.43 0.14 -2.19 16 12 Cl -0.06 -1.72 27.51 -2.72 -0.07 -1.80 16 13 C 0.50 18.34 7.18 87.66 0.63 18.97 16 14 O -0.58 -27.56 16.51 15.94 0.26 -27.30 16 15 N -0.69 -25.80 5.51 -466.80 -2.57 -28.37 16 16 C 0.23 11.03 4.50 85.63 0.38 11.41 16 17 C -0.54 -28.77 9.83 25.60 0.25 -28.52 16 18 H 0.07 3.65 7.84 -2.91 -0.02 3.63 16 19 C 0.03 1.68 5.47 84.66 0.46 2.15 16 20 N -0.93 -54.02 13.96 21.45 0.30 -53.72 16 21 Si 0.93 43.52 27.47 68.60 1.88 45.41 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 24 H -0.26 -12.34 6.54 99.48 0.65 -11.69 16 25 H 0.10 1.24 6.91 -2.39 -0.02 1.22 16 26 H 0.10 1.51 7.92 -2.39 -0.02 1.49 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.17 1.47 5.43 -2.91 -0.02 1.45 16 29 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 30 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 31 H 0.41 12.51 8.10 -92.71 -0.75 11.76 16 32 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 33 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 34 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -73.83 324.41 2.95 -70.88 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.35 Total: 4.93 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 3.52 Total: 0.38 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.27 Total: -82.09 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.39 Total: -36.73 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.41 kcal Atomic # 17 Polarization: -2.62 SS G_CDS: -0.15 Total: -2.77 kcal Total: -73.83 2.95 -70.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427607241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.934 kcal (2) G-P(sol) polarization free energy of solvation -73.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds