Wall clock time and date at job start Tue Mar 31 2020 12:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00456 * 2 1 4 4 N 1.46898 * 109.47031 * 124.59049 * 3 2 1 5 5 C 1.46898 * 111.00028 * 301.10564 * 4 3 2 6 6 C 1.50707 * 109.47012 * 287.91255 * 5 4 3 7 7 H 1.07996 * 119.99949 * 4.77923 * 6 5 4 8 8 C 1.37876 * 120.00107 * 184.78542 * 6 5 4 9 9 N 1.31524 * 119.99799 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00391 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47058 * 59.99789 * 10 8 6 12 12 H 1.48496 * 109.47293 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46992 * 300.00371 * 10 8 6 14 14 C 1.46895 * 111.00215 * 65.05916 * 4 3 2 15 15 C 1.50704 * 109.47215 * 72.62721 * 14 4 3 16 16 C 1.38241 * 119.97616 * 254.60677 * 15 14 4 17 17 C 1.38204 * 120.06143 * 180.02562 * 16 15 14 18 18 C 1.38455 * 120.00798 * 359.97438 * 17 16 15 19 19 F 1.35105 * 120.02122 * 180.02562 * 18 17 16 20 20 C 1.38519 * 119.95726 * 0.02562 * 18 17 16 21 21 Cl 1.73598 * 120.03091 * 180.02562 * 20 18 17 22 22 C 1.38326 * 119.97144 * 74.33004 * 15 14 4 23 23 Cl 1.73598 * 120.01101 * 0.02562 * 22 15 14 24 24 H 1.08003 * 119.99649 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.00354 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99989 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47075 * 4.59037 * 3 2 1 28 28 H 1.09004 * 109.47421 * 244.58786 * 3 2 1 29 29 H 1.09000 * 109.47152 * 47.90564 * 5 4 3 30 30 H 1.09000 * 109.47371 * 167.91204 * 5 4 3 31 31 H 0.96999 * 119.99678 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47180 * 312.63186 * 14 4 3 33 33 H 1.08999 * 109.47272 * 192.62578 * 14 4 3 34 34 H 1.07996 * 119.97330 * 0.02562 * 16 15 14 35 35 H 1.07998 * 119.99180 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9893 1.3359 1.1402 5 6 2.2660 1.1848 2.4098 6 6 1.4993 2.4483 2.7045 7 1 1.4821 3.2505 1.9817 8 6 0.8198 2.5802 3.8969 9 7 0.8405 1.6030 4.7770 10 14 -0.1300 4.1465 4.2626 11 1 -1.1781 4.3425 3.2289 12 1 -0.7679 4.0380 5.5992 13 1 0.8003 5.3039 4.2499 14 6 4.0297 0.3082 1.0015 15 6 5.0004 0.7181 -0.0760 16 6 4.9676 0.0938 -1.3090 17 6 5.8573 0.4679 -2.2982 18 6 6.7822 1.4692 -2.0551 19 9 7.6517 1.8355 -3.0222 20 6 6.8155 2.0950 -0.8198 21 17 7.9739 3.3511 -0.5132 22 6 5.9196 1.7226 0.1677 23 17 5.9554 2.5103 1.7143 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3582 2.1319 0.0822 28 1 2.6272 1.3992 -0.9283 29 1 1.5719 0.3477 2.3351 30 1 2.9779 0.9961 3.2133 31 1 0.3621 1.6956 5.6158 32 1 3.5683 -0.6420 0.7325 33 1 4.5611 0.1993 1.9469 34 1 4.2462 -0.6870 -1.4995 35 1 5.8305 -0.0202 -3.2612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430109064.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:14 Heat of formation + Delta-G solvation = -5.324000 kcal Electronic energy + Delta-G solvation = -21831.755793 eV Core-core repulsion = 18217.755028 eV Total energy + Delta-G solvation = -3614.000765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.11325 -39.63949 -37.31923 -36.54116 -36.22837 -32.86003 -32.64405 -30.88890 -30.73803 -27.20640 -26.22341 -23.99077 -23.25664 -21.77984 -20.92964 -18.95425 -17.98476 -17.08358 -16.37407 -15.97319 -15.85644 -15.27688 -14.81646 -14.67307 -14.30582 -14.18798 -14.03029 -13.63884 -13.33714 -12.98798 -12.22550 -12.04242 -11.84892 -11.77596 -11.36610 -11.27561 -11.18123 -11.05558 -10.95673 -10.78687 -10.66488 -10.51965 -10.48845 -9.88666 -9.29041 -8.89425 -8.80373 -8.63006 -8.39295 -7.31740 -6.00505 -4.00394 0.75297 0.83227 1.78923 2.27947 2.80653 3.18948 3.34289 3.38653 3.41908 3.96375 4.43279 4.52242 4.57312 4.83848 5.03675 5.16579 5.36777 5.43851 5.45430 5.52540 5.63933 5.75762 5.89189 5.96895 6.10599 6.22696 6.34763 6.43344 6.59860 7.07820 7.20870 7.25341 7.37161 7.79255 8.05810 8.16844 8.51399 9.05391 9.62769 11.10184 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.004467 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.081169 B = 6266.032919 C = 7399.880555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.182 4.182 3 C 0.088 3.912 4 N -0.516 5.516 5 C 0.195 3.805 6 C -0.498 4.498 7 H 0.060 0.940 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.083 3.917 15 C -0.054 4.054 16 C -0.074 4.074 17 C -0.143 4.143 18 C 0.109 3.891 19 F -0.127 7.127 20 C -0.076 4.076 21 Cl -0.038 7.038 22 C 0.015 3.985 23 Cl -0.010 7.010 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.060 0.940 29 H -0.001 1.001 30 H 0.031 0.969 31 H 0.260 0.740 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.217 -4.010 -13.194 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.202 4.202 3 C -0.040 4.040 4 N -0.239 5.239 5 C 0.070 3.930 6 C -0.537 4.537 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.539 5.539 10 Si 0.722 3.278 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.045 4.045 15 C -0.056 4.056 16 C -0.093 4.093 17 C -0.162 4.162 18 C 0.089 3.911 19 F -0.105 7.105 20 C -0.105 4.105 21 Cl -0.009 7.009 22 C -0.013 4.013 23 Cl 0.019 6.981 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.017 0.983 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.162 0.838 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.531 -3.371 -12.829 16.937 hybrid contribution -0.704 0.238 0.297 0.800 sum 9.827 -3.133 -12.532 16.231 Atomic orbital electron populations 1.23710 0.96063 1.01192 1.00521 1.23515 0.96723 0.99677 1.00282 1.21290 0.94648 0.94491 0.93618 1.62446 1.12913 1.44136 1.04365 1.19779 0.92453 0.96821 0.83919 1.21035 1.29154 1.01362 1.02133 0.92133 1.24925 0.96867 0.96434 0.96182 1.69941 1.43317 1.32011 1.08633 0.86633 0.80103 0.83840 0.77254 1.20378 1.21467 1.20238 1.21119 0.92898 0.94392 0.96093 1.20025 0.95331 0.93936 0.96298 1.21025 0.97699 0.99339 0.91191 1.21116 0.95863 0.97647 1.01543 1.17151 0.91937 0.97350 0.84668 1.91535 1.67269 1.90697 1.61018 1.20788 0.97717 0.97551 0.94414 1.98390 1.56878 1.49848 1.95746 1.20480 0.95683 0.95988 0.89195 1.98449 1.97500 1.78201 1.23925 0.88459 0.89660 0.88623 0.89692 0.92209 0.98281 0.95132 0.92994 0.93615 0.89459 0.83799 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 14.32 29.02 0.42 -2.43 16 2 C -0.18 -2.95 7.40 -36.02 -0.27 -3.21 16 3 C 0.09 1.53 5.54 -4.98 -0.03 1.50 16 4 N -0.52 -9.99 4.45 -238.96 -1.06 -11.05 16 5 C 0.19 4.70 4.58 -4.97 -0.02 4.67 16 6 C -0.50 -13.36 8.69 -34.44 -0.30 -13.65 16 7 H 0.06 1.63 7.35 -52.49 -0.39 1.24 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.04 13.29 55.43 0.74 -25.31 16 10 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.08 1.33 4.32 -4.98 -0.02 1.30 16 15 C -0.05 -0.75 4.69 -104.59 -0.49 -1.24 16 16 C -0.07 -0.81 9.08 -39.59 -0.36 -1.17 16 17 C -0.14 -1.47 10.03 -39.51 -0.40 -1.86 16 18 C 0.11 1.35 7.28 -39.40 -0.29 1.06 16 19 F -0.13 -1.57 16.84 2.25 0.04 -1.53 16 20 C -0.08 -1.05 6.33 -39.40 -0.25 -1.30 16 21 Cl -0.04 -0.51 27.62 -51.86 -1.43 -1.94 16 22 C 0.02 0.22 6.32 -39.47 -0.25 -0.02 16 23 Cl -0.01 -0.17 26.53 -51.86 -1.38 -1.55 16 24 H 0.10 1.62 7.84 -52.48 -0.41 1.21 16 25 H 0.09 1.22 8.06 -52.49 -0.42 0.80 16 26 H 0.10 1.40 6.73 -52.48 -0.35 1.05 16 27 H 0.08 1.65 6.87 -51.93 -0.36 1.30 16 28 H 0.06 0.92 6.92 -51.93 -0.36 0.56 16 29 H 0.00 -0.01 6.67 -51.93 -0.35 -0.36 16 30 H 0.03 0.81 7.72 -51.93 -0.40 0.41 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.05 0.66 6.00 -51.93 -0.31 0.35 16 33 H 0.09 1.47 7.18 -51.93 -0.37 1.10 16 34 H 0.14 1.26 8.00 -52.49 -0.42 0.84 16 35 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -28.49 329.30 -9.21 -37.70 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.70 Total: -2.81 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.35 Total: -14.88 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.33 Total: -36.36 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -2.81 Total: -3.49 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.49 -9.21 -37.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430109064.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.374 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds