Wall clock time and date at job start Tue Mar 31 2020 12:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00456 * 2 1 4 4 N 1.46898 * 109.47031 * 124.59049 * 3 2 1 5 5 C 1.46898 * 111.00028 * 301.10564 * 4 3 2 6 6 C 1.50707 * 109.47012 * 287.91255 * 5 4 3 7 7 H 1.07996 * 119.99949 * 4.77923 * 6 5 4 8 8 C 1.37876 * 120.00107 * 184.78542 * 6 5 4 9 9 N 1.31524 * 119.99799 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00391 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.47058 * 59.99789 * 10 8 6 12 12 H 1.48496 * 109.47293 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46992 * 300.00371 * 10 8 6 14 14 C 1.46895 * 111.00215 * 65.05916 * 4 3 2 15 15 C 1.50704 * 109.47215 * 72.62721 * 14 4 3 16 16 C 1.38241 * 119.97616 * 254.60677 * 15 14 4 17 17 C 1.38204 * 120.06143 * 180.02562 * 16 15 14 18 18 C 1.38455 * 120.00798 * 359.97438 * 17 16 15 19 19 F 1.35105 * 120.02122 * 180.02562 * 18 17 16 20 20 C 1.38519 * 119.95726 * 0.02562 * 18 17 16 21 21 Cl 1.73598 * 120.03091 * 180.02562 * 20 18 17 22 22 C 1.38326 * 119.97144 * 74.33004 * 15 14 4 23 23 Cl 1.73598 * 120.01101 * 0.02562 * 22 15 14 24 24 H 1.08003 * 119.99649 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.00354 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99989 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47075 * 4.59037 * 3 2 1 28 28 H 1.09004 * 109.47421 * 244.58786 * 3 2 1 29 29 H 1.09000 * 109.47152 * 47.90564 * 5 4 3 30 30 H 1.09000 * 109.47371 * 167.91204 * 5 4 3 31 31 H 0.96999 * 119.99678 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47180 * 312.63186 * 14 4 3 33 33 H 1.08999 * 109.47272 * 192.62578 * 14 4 3 34 34 H 1.07996 * 119.97330 * 0.02562 * 16 15 14 35 35 H 1.07998 * 119.99180 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9893 1.3359 1.1402 5 6 2.2660 1.1848 2.4098 6 6 1.4993 2.4483 2.7045 7 1 1.4821 3.2505 1.9817 8 6 0.8198 2.5802 3.8969 9 7 0.8405 1.6030 4.7770 10 14 -0.1300 4.1465 4.2626 11 1 -1.1781 4.3425 3.2289 12 1 -0.7679 4.0380 5.5992 13 1 0.8003 5.3039 4.2499 14 6 4.0297 0.3082 1.0015 15 6 5.0004 0.7181 -0.0760 16 6 4.9676 0.0938 -1.3090 17 6 5.8573 0.4679 -2.2982 18 6 6.7822 1.4692 -2.0551 19 9 7.6517 1.8355 -3.0222 20 6 6.8155 2.0950 -0.8198 21 17 7.9739 3.3511 -0.5132 22 6 5.9196 1.7226 0.1677 23 17 5.9554 2.5103 1.7143 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3582 2.1319 0.0822 28 1 2.6272 1.3992 -0.9283 29 1 1.5719 0.3477 2.3351 30 1 2.9779 0.9961 3.2133 31 1 0.3621 1.6956 5.6158 32 1 3.5683 -0.6420 0.7325 33 1 4.5611 0.1993 1.9469 34 1 4.2462 -0.6870 -1.4995 35 1 5.8305 -0.0202 -3.2612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430109064.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:13 Heat of formation + Delta-G solvation = -20.152730 kcal Electronic energy + Delta-G solvation = -21832.398815 eV Core-core repulsion = 18217.755028 eV Total energy + Delta-G solvation = -3614.643787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -50.07343 -40.71312 -38.69464 -37.61934 -37.39521 -34.78662 -33.97834 -32.11139 -31.82824 -29.01537 -27.50391 -25.62402 -24.24876 -23.12700 -22.34207 -20.30949 -18.97134 -18.30342 -18.10408 -17.10098 -16.95421 -16.79295 -16.24257 -16.02317 -15.73510 -15.38480 -15.13621 -14.75893 -14.48568 -14.43605 -14.01181 -13.28118 -13.12388 -13.10405 -12.81106 -12.68842 -12.60560 -12.43601 -12.27400 -12.21334 -12.13202 -12.03773 -11.85806 -11.69413 -11.23871 -10.53359 -10.12782 -9.86381 -9.69584 -8.86691 -8.11830 -6.18186 -0.22705 -0.15795 0.73657 1.19745 1.42036 1.43922 1.51103 1.53006 2.20666 2.44972 2.98870 3.21142 3.43075 3.56465 3.71623 3.99560 4.07945 4.15788 4.30856 4.41456 4.56954 4.61753 4.77200 4.82497 4.94019 5.04585 5.12903 5.24641 5.32185 5.42855 5.52042 5.72319 5.80336 5.98922 6.17315 6.48064 6.69570 6.96379 7.49413 8.97911 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.004467 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.081169 B = 6266.032919 C = 7399.880555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.185 4.185 3 C 0.091 3.909 4 N -0.525 5.525 5 C 0.215 3.785 6 C -0.506 4.506 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.953 3.047 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.087 3.913 15 C -0.065 4.065 16 C -0.059 4.059 17 C -0.122 4.122 18 C 0.107 3.893 19 F -0.127 7.127 20 C -0.089 4.089 21 Cl -0.043 7.043 22 C 0.000 4.000 23 Cl -0.040 7.040 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.058 0.942 28 H 0.086 0.914 29 H -0.018 1.018 30 H -0.001 1.001 31 H 0.261 0.739 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.177 0.823 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.083 -4.935 -15.622 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.204 4.204 3 C -0.037 4.037 4 N -0.247 5.247 5 C 0.090 3.910 6 C -0.544 4.544 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.573 5.573 10 Si 0.779 3.221 11 H -0.194 1.194 12 H -0.212 1.212 13 H -0.201 1.201 14 C -0.040 4.040 15 C -0.067 4.067 16 C -0.078 4.078 17 C -0.140 4.140 18 C 0.087 3.913 19 F -0.105 7.105 20 C -0.117 4.117 21 Cl -0.014 7.014 22 C -0.029 4.029 23 Cl -0.011 7.011 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.136 0.864 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.000 1.000 30 H 0.017 0.983 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.194 0.806 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 10.408 -4.292 -15.285 18.983 hybrid contribution -0.601 0.485 0.939 1.216 sum 9.806 -3.807 -14.346 17.789 Atomic orbital electron populations 1.23849 0.96349 1.01594 1.00358 1.23566 0.96780 0.99753 1.00335 1.21237 0.94305 0.94450 0.93700 1.62250 1.13315 1.46188 1.02987 1.19317 0.91250 0.94936 0.85540 1.21350 1.29031 1.02115 1.01930 0.92699 1.25684 0.97919 0.99269 0.96199 1.70056 1.44410 1.33843 1.09036 0.85688 0.78955 0.80247 0.77232 1.19401 1.21168 1.20065 1.21046 0.92176 0.94335 0.96466 1.19903 0.95066 0.94705 0.97022 1.21344 0.97870 0.98984 0.89557 1.21516 0.93776 0.95972 1.02743 1.17369 0.92311 0.97627 0.84007 1.91542 1.67392 1.90773 1.60794 1.20895 0.97810 0.98001 0.95010 1.98384 1.57011 1.50165 1.95860 1.20563 0.97050 0.96872 0.88396 1.98435 1.97692 1.78955 1.26015 0.89788 0.87686 0.86391 0.92397 0.89583 1.00045 0.98253 0.93063 0.91560 0.91245 0.80555 0.79669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.65 14.32 67.78 0.97 -4.68 16 2 C -0.18 -5.60 7.40 25.65 0.19 -5.41 16 3 C 0.09 3.05 5.54 85.56 0.47 3.52 16 4 N -0.53 -20.22 4.45 -909.94 -4.05 -24.27 16 5 C 0.22 10.62 4.58 85.56 0.39 11.02 16 6 C -0.51 -27.63 8.69 25.60 0.22 -27.40 16 7 H 0.05 3.00 7.35 -2.91 -0.02 2.98 16 8 C 0.01 0.39 5.46 84.65 0.46 0.85 16 9 N -0.93 -55.04 13.29 21.45 0.28 -54.75 16 10 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 C 0.09 2.70 4.32 85.56 0.37 3.07 16 15 C -0.07 -1.68 4.69 -19.84 -0.09 -1.77 16 16 C -0.06 -1.04 9.08 22.26 0.20 -0.84 16 17 C -0.12 -1.93 10.03 22.31 0.22 -1.70 16 18 C 0.11 2.34 7.28 22.39 0.16 2.50 16 19 F -0.13 -2.80 16.84 44.97 0.76 -2.04 16 20 C -0.09 -2.33 6.33 22.39 0.14 -2.19 16 21 Cl -0.04 -1.15 27.62 -2.72 -0.08 -1.22 16 22 C 0.00 -0.01 6.32 22.34 0.14 0.13 16 23 Cl -0.04 -1.38 26.53 -2.72 -0.07 -1.45 16 24 H 0.08 2.78 7.84 -2.91 -0.02 2.76 16 25 H 0.10 2.79 8.06 -2.91 -0.02 2.76 16 26 H 0.12 3.04 6.73 -2.91 -0.02 3.02 16 27 H 0.06 2.25 6.87 -2.39 -0.02 2.23 16 28 H 0.09 2.42 6.92 -2.38 -0.02 2.40 16 29 H -0.02 -0.94 6.67 -2.39 -0.02 -0.96 16 30 H 0.00 -0.04 7.72 -2.39 -0.02 -0.06 16 31 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.07 1.76 6.00 -2.39 -0.01 1.74 16 33 H 0.07 2.39 7.18 -2.39 -0.02 2.37 16 34 H 0.18 2.02 8.00 -2.91 -0.02 2.00 16 35 H 0.19 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -63.04 329.30 3.84 -59.20 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.12 Total: 1.07 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 3.86 Total: -22.90 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -3.77 Total: -79.02 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.76 Total: -2.04 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.15 Total: -2.67 kcal Total: -63.04 3.84 -59.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430109064.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.045 kcal (2) G-P(sol) polarization free energy of solvation -63.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds