Wall clock time and date at job start Tue Mar 31 2020 11:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47156 * 2 1 4 4 C 1.34770 * 120.00154 * 89.99567 * 3 2 1 5 5 O 1.21285 * 120.00207 * 175.16990 * 4 3 2 6 6 C 1.50703 * 119.99907 * 355.17377 * 4 3 2 7 7 S 1.81007 * 109.46946 * 180.02562 * 6 4 3 8 8 C 1.76196 * 99.99786 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00478 * 359.97438 * 8 7 6 10 10 C 1.38803 * 119.99964 * 179.97438 * 8 7 6 11 11 N 1.31629 * 120.00276 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99745 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47292 * 89.99987 * 12 10 8 14 14 H 1.48504 * 109.46654 * 210.00032 * 12 10 8 15 15 H 1.48499 * 109.47191 * 329.99674 * 12 10 8 16 16 C 1.39963 * 119.99390 * 269.99839 * 3 2 1 17 17 C 1.38890 * 120.04645 * 292.33434 * 16 3 2 18 18 C 1.38117 * 119.98975 * 180.02562 * 17 16 3 19 19 C 1.38346 * 120.08104 * 0.02562 * 18 17 16 20 20 Cl 1.73604 * 119.95364 * 179.97438 * 19 18 17 21 21 C 1.38588 * 120.09524 * 0.02627 * 19 18 17 22 22 F 1.35100 * 119.99598 * 179.97438 * 21 19 18 23 23 C 1.38333 * 120.00572 * 359.67609 * 21 19 18 24 24 H 1.09008 * 109.46863 * 60.00513 * 1 2 3 25 25 H 1.09000 * 109.47370 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47350 * 300.00807 * 1 2 3 27 27 H 1.08995 * 109.47854 * 239.99694 * 2 1 3 28 28 H 1.09004 * 109.47331 * 119.99374 * 2 1 3 29 29 H 1.09002 * 109.47517 * 59.99749 * 6 4 3 30 30 H 1.08997 * 109.46992 * 299.99306 * 6 4 3 31 31 H 0.96995 * 120.00109 * 180.02562 * 11 10 8 32 32 H 1.07995 * 120.00748 * 0.03131 * 17 16 3 33 33 H 1.08004 * 119.95539 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.04584 * 180.29768 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0167 1.1671 5 8 2.7295 3.1276 1.1690 6 6 1.8894 1.3467 2.4699 7 16 2.3066 2.4458 3.8462 8 6 1.8034 1.4411 5.2034 9 1 1.3828 0.4627 5.0243 10 6 1.9475 1.9072 6.5029 11 7 1.5720 1.1565 7.5169 12 14 2.6744 3.5999 6.8127 13 1 1.5857 4.6095 6.8357 14 1 3.3807 3.6036 8.1190 15 1 3.6347 3.9320 5.7298 16 6 2.2516 2.0410 -1.2122 17 6 3.2841 1.6250 -2.0428 18 6 3.5135 2.2771 -3.2385 19 6 2.7164 3.3450 -3.6101 20 17 3.0082 4.1628 -5.1134 21 6 1.6859 3.7637 -2.7833 22 9 0.9090 4.8071 -3.1479 23 6 1.4488 3.1094 -1.5878 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.4502 0.4167 2.5642 30 1 0.8213 1.1304 2.4892 31 1 1.6724 1.4824 8.4249 32 1 3.9073 0.7917 -1.7539 33 1 4.3168 1.9534 -3.8839 34 1 0.6429 3.4320 -0.9454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441409623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:51 Heat of formation + Delta-G solvation = -56.218472 kcal Electronic energy + Delta-G solvation = -21238.171279 eV Core-core repulsion = 17624.007271 eV Total energy + Delta-G solvation = -3614.164009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.19625 -40.71684 -38.64371 -36.89720 -35.88623 -32.49692 -31.83498 -31.03249 -30.06509 -28.52269 -25.68213 -23.93677 -23.46892 -22.75248 -19.99307 -18.06944 -17.74391 -17.13776 -16.95570 -16.68238 -16.11080 -15.93316 -15.16076 -15.02996 -14.36548 -14.13108 -14.00285 -13.81738 -13.67789 -13.27740 -13.18262 -12.85953 -12.62747 -12.42912 -12.18692 -11.97843 -11.73411 -11.32167 -11.31159 -11.24150 -11.04785 -10.70786 -9.94289 -9.75648 -9.54249 -9.23564 -9.05758 -8.64115 -8.57765 -7.00303 -6.34496 -4.07534 0.54529 0.75307 1.68211 2.44659 2.65656 2.98778 3.06267 3.29241 3.46170 3.49429 3.79460 4.27580 4.33080 4.51009 4.61807 4.64914 4.79083 4.95318 4.96410 5.04373 5.05257 5.17458 5.34338 5.51298 5.55585 5.57228 5.63083 5.68456 5.82434 5.95804 6.05815 6.12433 6.61886 7.09149 7.88370 8.18053 8.35553 9.11497 10.74596 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.023276 B = 0.003102 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.643083 B = 9023.947826 C = 9610.177065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.106 3.894 3 N -0.583 5.583 4 C 0.535 3.465 5 O -0.498 6.498 6 C -0.120 4.120 7 S -0.141 6.141 8 C -0.522 4.522 9 H 0.089 0.911 10 C 0.097 3.903 11 N -0.879 5.879 12 Si 0.855 3.145 13 H -0.267 1.267 14 H -0.273 1.273 15 H -0.235 1.235 16 C 0.192 3.808 17 C -0.121 4.121 18 C -0.071 4.071 19 C -0.080 4.080 20 Cl -0.052 7.052 21 C 0.124 3.876 22 F -0.124 7.124 23 C -0.135 4.135 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.271 0.729 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -2.507 -23.655 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.016 4.016 3 N -0.316 5.316 4 C 0.324 3.676 5 O -0.370 6.370 6 C -0.271 4.271 7 S 0.085 5.915 8 C -0.669 4.669 9 H 0.107 0.893 10 C -0.112 4.112 11 N -0.515 5.515 12 Si 0.680 3.320 13 H -0.192 1.192 14 H -0.199 1.199 15 H -0.159 1.159 16 C 0.100 3.900 17 C -0.141 4.141 18 C -0.091 4.091 19 C -0.108 4.108 20 Cl -0.023 7.023 21 C 0.103 3.897 22 F -0.103 7.103 23 C -0.155 4.155 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.393 -0.780 -23.532 23.586 hybrid contribution -0.542 -0.437 0.265 0.745 sum 0.851 -1.217 -23.267 23.314 Atomic orbital electron populations 1.22250 0.95245 1.02873 1.03018 1.21752 0.95076 0.80674 1.04068 1.45751 1.67678 1.14955 1.03171 1.20539 0.77008 0.85846 0.84227 1.90751 1.40641 1.19138 1.86468 1.23355 1.05433 1.03762 0.94521 1.84866 1.83481 1.25535 0.97592 1.22274 1.48405 1.05333 0.90925 0.89279 1.24701 0.93917 0.97712 0.94873 1.69929 1.45404 1.37140 0.99045 0.86755 0.81262 0.84177 0.79789 1.19162 1.19854 1.15926 1.17323 0.93093 0.92833 0.86729 1.21289 0.96823 1.01826 0.94145 1.20799 0.98459 0.93226 0.96566 1.20978 0.99655 0.99285 0.90908 1.98385 1.95505 1.78257 1.30190 1.17123 0.91097 0.87553 0.93957 1.91555 1.72864 1.54457 1.91378 1.21259 1.01618 0.97446 0.95200 0.92294 0.90912 0.91572 0.89933 0.88973 0.88120 0.88032 0.91859 0.83936 0.83480 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 10.23 37.16 0.38 -1.12 16 2 C 0.11 0.94 5.85 -4.04 -0.02 0.92 16 3 N -0.58 -7.29 2.52 -113.45 -0.29 -7.57 16 4 C 0.54 9.08 7.54 -10.99 -0.08 8.99 16 5 O -0.50 -10.40 15.62 5.55 0.09 -10.32 16 6 C -0.12 -2.19 4.82 36.01 0.17 -2.01 16 7 S -0.14 -3.45 18.55 -107.50 -1.99 -5.45 16 8 C -0.52 -14.54 10.04 30.94 0.31 -14.23 16 9 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 10 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 11 N -0.88 -25.97 13.97 55.49 0.78 -25.20 16 12 Si 0.86 21.37 27.74 -169.99 -4.71 16.65 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 16 C 0.19 2.29 4.75 -83.69 -0.40 1.89 16 17 C -0.12 -1.15 9.68 -39.38 -0.38 -1.53 16 18 C -0.07 -0.63 9.82 -39.59 -0.39 -1.02 16 19 C -0.08 -0.85 6.33 -39.41 -0.25 -1.10 16 20 Cl -0.05 -0.52 28.61 -51.86 -1.48 -2.00 16 21 C 0.12 1.49 7.27 -39.42 -0.29 1.20 16 22 F -0.12 -1.59 16.83 2.25 0.04 -1.55 16 23 C -0.13 -1.68 9.53 -39.33 -0.37 -2.06 16 24 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.67 6.95 -51.93 -0.36 0.31 16 27 H 0.08 0.54 7.85 -51.93 -0.41 0.13 16 28 H 0.09 0.80 6.47 -51.93 -0.34 0.46 16 29 H 0.10 1.66 7.26 -51.92 -0.38 1.29 16 30 H 0.10 1.71 6.95 -51.92 -0.36 1.35 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -32.62 328.43 -7.58 -40.20 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -3.53 Total: -2.34 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.42 Total: -7.38 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.49 Total: -32.77 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.65 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.45 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.62 -7.58 -40.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441409623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.019 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds