Wall clock time and date at job start Tue Mar 31 2020 11:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47156 * 2 1 4 4 C 1.34770 * 120.00154 * 89.99567 * 3 2 1 5 5 O 1.21285 * 120.00207 * 175.16990 * 4 3 2 6 6 C 1.50703 * 119.99907 * 355.17377 * 4 3 2 7 7 S 1.81007 * 109.46946 * 180.02562 * 6 4 3 8 8 C 1.76196 * 99.99786 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00478 * 359.97438 * 8 7 6 10 10 C 1.38803 * 119.99964 * 179.97438 * 8 7 6 11 11 N 1.31629 * 120.00276 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99745 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47292 * 89.99987 * 12 10 8 14 14 H 1.48504 * 109.46654 * 210.00032 * 12 10 8 15 15 H 1.48499 * 109.47191 * 329.99674 * 12 10 8 16 16 C 1.39963 * 119.99390 * 269.99839 * 3 2 1 17 17 C 1.38890 * 120.04645 * 292.33434 * 16 3 2 18 18 C 1.38117 * 119.98975 * 180.02562 * 17 16 3 19 19 C 1.38346 * 120.08104 * 0.02562 * 18 17 16 20 20 Cl 1.73604 * 119.95364 * 179.97438 * 19 18 17 21 21 C 1.38588 * 120.09524 * 0.02627 * 19 18 17 22 22 F 1.35100 * 119.99598 * 179.97438 * 21 19 18 23 23 C 1.38333 * 120.00572 * 359.67609 * 21 19 18 24 24 H 1.09008 * 109.46863 * 60.00513 * 1 2 3 25 25 H 1.09000 * 109.47370 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47350 * 300.00807 * 1 2 3 27 27 H 1.08995 * 109.47854 * 239.99694 * 2 1 3 28 28 H 1.09004 * 109.47331 * 119.99374 * 2 1 3 29 29 H 1.09002 * 109.47517 * 59.99749 * 6 4 3 30 30 H 1.08997 * 109.46992 * 299.99306 * 6 4 3 31 31 H 0.96995 * 120.00109 * 180.02562 * 11 10 8 32 32 H 1.07995 * 120.00748 * 0.03131 * 17 16 3 33 33 H 1.08004 * 119.95539 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.04584 * 180.29768 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0167 1.1671 5 8 2.7295 3.1276 1.1690 6 6 1.8894 1.3467 2.4699 7 16 2.3066 2.4458 3.8462 8 6 1.8034 1.4411 5.2034 9 1 1.3828 0.4627 5.0243 10 6 1.9475 1.9072 6.5029 11 7 1.5720 1.1565 7.5169 12 14 2.6744 3.5999 6.8127 13 1 1.5857 4.6095 6.8357 14 1 3.3807 3.6036 8.1190 15 1 3.6347 3.9320 5.7298 16 6 2.2516 2.0410 -1.2122 17 6 3.2841 1.6250 -2.0428 18 6 3.5135 2.2771 -3.2385 19 6 2.7164 3.3450 -3.6101 20 17 3.0082 4.1628 -5.1134 21 6 1.6859 3.7637 -2.7833 22 9 0.9090 4.8071 -3.1479 23 6 1.4488 3.1094 -1.5878 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.4502 0.4167 2.5642 30 1 0.8213 1.1304 2.4892 31 1 1.6724 1.4824 8.4249 32 1 3.9073 0.7917 -1.7539 33 1 4.3168 1.9534 -3.8839 34 1 0.6429 3.4320 -0.9454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441409623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:50 Heat of formation + Delta-G solvation = -74.827833 kcal Electronic energy + Delta-G solvation = -21238.978242 eV Core-core repulsion = 17624.007271 eV Total energy + Delta-G solvation = -3614.970971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.13669 -41.78154 -39.66664 -37.78269 -36.90113 -34.67348 -32.71065 -31.87414 -31.25025 -29.59881 -27.85458 -24.78653 -24.35000 -23.67212 -21.11533 -19.75755 -18.98058 -18.14569 -17.93878 -17.68824 -17.20098 -17.02436 -16.88596 -16.41740 -15.88861 -15.14892 -15.05714 -14.89774 -14.84055 -14.68691 -14.12042 -14.07318 -13.61716 -13.43255 -13.36769 -13.12205 -13.03282 -12.83437 -12.66086 -12.50811 -12.07448 -12.02430 -11.87986 -11.17976 -11.13727 -10.55346 -10.46824 -10.10788 -9.55983 -9.01647 -8.51860 -6.22955 -0.31842 -0.07227 0.86192 0.94251 1.30789 1.34499 1.42269 1.50402 1.86699 2.21961 2.24020 2.65404 2.86770 2.93666 3.45837 3.57332 3.85011 3.88428 4.00368 4.09876 4.20691 4.30806 4.41170 4.49673 4.55083 4.78576 4.79957 4.89408 4.92498 5.11690 5.27711 5.33602 5.68553 5.71069 5.98744 6.12104 6.92287 6.94039 8.60334 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.023276 B = 0.003102 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.643083 B = 9023.947826 C = 9610.177065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 N -0.567 5.567 4 C 0.539 3.461 5 O -0.545 6.545 6 C -0.104 4.104 7 S -0.179 6.179 8 C -0.525 4.525 9 H 0.067 0.933 10 C 0.048 3.952 11 N -0.916 5.916 12 Si 0.910 3.090 13 H -0.264 1.264 14 H -0.259 1.259 15 H -0.237 1.237 16 C 0.172 3.828 17 C -0.108 4.108 18 C -0.058 4.058 19 C -0.082 4.082 20 Cl -0.046 7.046 21 C 0.106 3.894 22 F -0.135 7.135 23 C -0.148 4.148 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.277 0.723 32 H 0.172 0.828 33 H 0.182 0.818 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 -3.485 -25.735 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 N -0.297 5.297 4 C 0.328 3.672 5 O -0.421 6.421 6 C -0.255 4.255 7 S 0.048 5.952 8 C -0.672 4.672 9 H 0.085 0.915 10 C -0.158 4.158 11 N -0.554 5.554 12 Si 0.732 3.268 13 H -0.189 1.189 14 H -0.184 1.184 15 H -0.161 1.161 16 C 0.080 3.920 17 C -0.128 4.128 18 C -0.077 4.077 19 C -0.110 4.110 20 Cl -0.017 7.017 21 C 0.085 3.915 22 F -0.113 7.113 23 C -0.169 4.169 24 H 0.077 0.923 25 H 0.113 0.887 26 H 0.063 0.937 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.086 0.914 32 H 0.189 0.811 33 H 0.199 0.801 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.532 -1.798 -25.647 25.834 hybrid contribution -0.956 -0.244 0.719 1.221 sum 1.577 -2.042 -24.928 25.061 Atomic orbital electron populations 1.22231 0.95010 1.03980 1.01935 1.22118 0.95293 0.78742 1.06096 1.45611 1.66154 1.15859 1.02111 1.20226 0.76784 0.85205 0.84976 1.90734 1.43216 1.21002 1.87167 1.23314 1.06571 1.02888 0.92705 1.84811 1.83746 1.27456 0.99182 1.22416 1.47618 1.04821 0.92374 0.91530 1.25505 0.94420 1.00982 0.94871 1.70003 1.46818 1.38895 0.99657 0.85926 0.80654 0.80134 0.80036 1.18928 1.18371 1.16075 1.17515 0.94354 0.93301 0.86791 1.21570 0.95642 1.02062 0.93490 1.21186 0.98303 0.91787 0.96448 1.21167 0.99299 0.99645 0.90886 1.98390 1.95380 1.78296 1.29670 1.17271 0.91962 0.87810 0.94461 1.91522 1.73324 1.55015 1.91476 1.21210 1.01986 0.98168 0.95505 0.92325 0.88703 0.93719 0.86430 0.88427 0.86039 0.86693 0.91366 0.81101 0.80070 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.23 71.98 0.74 -1.86 16 2 C 0.10 1.44 5.85 86.38 0.50 1.95 16 3 N -0.57 -13.07 2.52 -631.24 -1.59 -14.67 16 4 C 0.54 17.82 7.54 87.66 0.66 18.48 16 5 O -0.55 -22.76 15.62 -3.04 -0.05 -22.81 16 6 C -0.10 -3.70 4.82 71.24 0.34 -3.36 16 7 S -0.18 -8.75 18.55 -56.49 -1.05 -9.80 16 8 C -0.52 -29.59 10.04 67.96 0.68 -28.91 16 9 H 0.07 3.93 8.03 -2.91 -0.02 3.90 16 10 C 0.05 2.75 5.50 84.86 0.47 3.22 16 11 N -0.92 -54.74 13.97 21.65 0.30 -54.44 16 12 Si 0.91 44.33 27.74 68.60 1.90 46.23 16 13 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 15 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 16 C 0.17 3.77 4.75 38.14 0.18 3.95 16 17 C -0.11 -1.67 9.68 22.40 0.22 -1.45 16 18 C -0.06 -0.82 9.82 22.27 0.22 -0.60 16 19 C -0.08 -1.57 6.33 22.38 0.14 -1.43 16 20 Cl -0.05 -0.83 28.61 -2.72 -0.08 -0.91 16 21 C 0.11 2.49 7.27 22.38 0.16 2.65 16 22 F -0.13 -3.49 16.83 44.97 0.76 -2.73 16 23 C -0.15 -3.66 9.53 22.43 0.21 -3.44 16 24 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.04 0.86 6.95 -2.39 -0.02 0.84 16 27 H 0.12 0.99 7.85 -2.39 -0.02 0.98 16 28 H 0.10 1.38 6.47 -2.38 -0.02 1.37 16 29 H 0.12 3.81 7.26 -2.39 -0.02 3.79 16 30 H 0.11 3.78 6.95 -2.40 -0.02 3.77 16 31 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -72.18 328.43 5.82 -66.35 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.10 Total: 3.58 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 4.53 Total: -10.81 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.29 Total: -69.11 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.76 Total: -2.73 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.05 Total: -9.80 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -72.18 5.82 -66.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441409623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.475 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds