Wall clock time and date at job start Tue Mar 31 2020 12:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37882 * 119.88823 * 2 1 4 4 C 1.39677 * 119.87193 * 179.97438 * 3 2 1 5 5 C 1.47570 * 120.17079 * 180.02562 * 4 3 2 6 6 O 1.21484 * 119.99953 * 179.97438 * 5 4 3 7 7 O 1.34732 * 119.99650 * 359.97438 * 5 4 3 8 8 C 1.39918 * 119.66148 * 359.97438 * 4 3 2 9 9 F 1.35098 * 120.11896 * 179.97438 * 8 4 3 10 10 C 1.38280 * 119.76840 * 0.02562 * 8 4 3 11 11 S 1.76199 * 119.93629 * 179.97438 * 10 8 4 12 12 O 1.42095 * 106.40227 * 181.45683 * 11 10 8 13 13 O 1.42107 * 106.40094 * 48.54099 * 11 10 8 14 14 N 1.65593 * 107.21807 * 294.99937 * 11 10 8 15 15 C 1.46506 * 120.00245 * 65.00204 * 14 11 10 16 16 C 1.50703 * 109.47289 * 164.99838 * 15 14 11 17 17 H 1.07994 * 119.99399 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99733 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47181 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46716 * 120.00463 * 20 18 16 23 23 H 1.48500 * 109.46999 * 240.00161 * 20 18 16 24 24 C 1.38245 * 120.12225 * 0.25551 * 10 8 4 25 25 H 1.09006 * 109.46771 * 90.00209 * 1 2 3 26 26 H 1.08996 * 109.47098 * 209.99959 * 1 2 3 27 27 H 1.08995 * 109.47663 * 330.00680 * 1 2 3 28 28 H 1.07996 * 120.06230 * 359.96964 * 3 2 1 29 29 H 0.96705 * 116.99342 * 179.97438 * 7 5 4 30 30 H 0.97000 * 120.00411 * 244.99876 * 14 11 10 31 31 H 1.09001 * 109.47060 * 285.00288 * 15 14 11 32 32 H 1.09004 * 109.47073 * 44.99777 * 15 14 11 33 33 H 0.96997 * 119.99752 * 179.97438 * 19 18 16 34 34 H 1.08003 * 119.82672 * 179.74711 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1940 1.1954 0.0000 4 6 3.5908 1.1950 0.0005 5 6 4.3328 2.4706 0.0011 6 8 5.5476 2.4666 0.0021 7 8 3.6629 3.6396 0.0006 8 6 4.2828 -0.0210 0.0016 9 9 5.6338 -0.0322 0.0016 10 6 3.5792 -1.2114 0.0016 11 16 4.4463 -2.7453 0.0023 12 8 3.4574 -3.7652 -0.0325 13 8 5.4291 -2.6502 1.0243 14 7 5.2700 -2.8434 -1.4309 15 6 6.3479 -1.8951 -1.7228 16 6 7.1657 -2.4050 -2.8813 17 1 6.9079 -3.3416 -3.3532 18 6 8.2421 -1.6754 -3.3393 19 7 8.5555 -0.5346 -2.7649 20 14 9.2562 -2.3079 -4.7749 21 1 8.7013 -3.6043 -5.2399 22 1 9.2098 -1.3232 -5.8855 23 1 10.6635 -2.4985 -4.3409 24 6 2.1968 -1.2002 -0.0048 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6532 2.1302 -0.0005 29 1 4.1923 4.4489 0.0014 30 1 5.0389 -3.5288 -2.0772 31 1 5.9197 -0.9259 -1.9789 32 1 6.9865 -1.7897 -0.8457 33 1 9.3131 -0.0215 -3.0869 34 1 1.6521 -2.1328 -0.0089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447146702.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:42 Heat of formation + Delta-G solvation = -212.569199 kcal Electronic energy + Delta-G solvation = -24969.207032 eV Core-core repulsion = 20907.553983 eV Total energy + Delta-G solvation = -4061.653050 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.46393 -41.52290 -40.07148 -38.39451 -37.21696 -37.08375 -36.56741 -34.20387 -33.77400 -33.14022 -28.81534 -27.77038 -26.20668 -24.74178 -24.47887 -22.04513 -20.64850 -19.76119 -19.14807 -19.11266 -18.09430 -17.97488 -17.78155 -17.41308 -17.38870 -17.05022 -16.56426 -16.28163 -15.54130 -15.25573 -14.83029 -14.77238 -14.66077 -14.52839 -14.07462 -13.67959 -13.59430 -13.37895 -13.27740 -13.21176 -13.00233 -12.89736 -12.81024 -12.71577 -12.53093 -12.21727 -12.09095 -11.78157 -11.39815 -10.96050 -10.84936 -10.23029 -9.91774 -8.24762 -6.40875 -0.85779 -0.72860 -0.52802 1.16864 1.41614 1.43225 1.56447 1.70857 1.91380 2.16611 2.39710 2.49457 2.71552 3.08017 3.18847 3.39902 3.58992 3.75231 3.94085 4.25462 4.39746 4.49524 4.51939 4.63436 4.72668 4.93943 5.16338 5.20060 5.20394 5.25909 5.41420 5.52163 5.70784 5.91194 6.25679 6.74566 6.79724 7.29558 8.85700 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.005614 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.030543 B = 4986.444239 C = 6376.308113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.116 4.116 3 C 0.031 3.969 4 C -0.196 4.196 5 C 0.528 3.472 6 O -0.539 6.539 7 O -0.488 6.488 8 C 0.214 3.786 9 F -0.116 7.116 10 C -0.729 4.729 11 S 2.706 3.294 12 O -0.963 6.963 13 O -0.990 6.990 14 N -1.099 6.099 15 C 0.261 3.739 16 C -0.553 4.553 17 H 0.080 0.920 18 C 0.004 3.996 19 N -0.925 5.925 20 Si 0.979 3.021 21 H -0.256 1.256 22 H -0.276 1.276 23 H -0.280 1.280 24 C 0.037 3.963 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.196 0.804 29 H 0.438 0.562 30 H 0.423 0.577 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.267 0.733 34 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.705 5.840 4.124 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.117 4.117 3 C 0.013 3.987 4 C -0.199 4.199 5 C 0.373 3.627 6 O -0.429 6.429 7 O -0.303 6.303 8 C 0.193 3.807 9 F -0.094 7.094 10 C -0.817 4.817 11 S 2.795 3.205 12 O -0.954 6.954 13 O -0.981 6.981 14 N -0.862 5.862 15 C 0.136 3.864 16 C -0.592 4.592 17 H 0.098 0.902 18 C -0.196 4.196 19 N -0.564 5.564 20 Si 0.802 3.198 21 H -0.179 1.179 22 H -0.202 1.202 23 H -0.206 1.206 24 C 0.018 3.982 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.213 0.787 29 H 0.300 0.700 30 H 0.259 0.741 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.076 0.924 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -20.392 5.187 4.928 21.611 hybrid contribution 1.830 0.885 -1.025 2.277 sum -18.562 6.072 3.902 19.916 Atomic orbital electron populations 1.20971 0.85437 1.05586 1.04734 1.20573 0.99687 0.90897 1.00581 1.22002 0.89354 1.01435 0.85874 1.19322 0.96180 0.88544 1.15816 1.20508 0.84921 0.85133 0.72184 1.91059 1.16738 1.88485 1.46665 1.84414 1.44313 1.16333 1.85208 1.17631 0.77005 0.93915 0.92157 1.91763 1.28789 1.97175 1.91650 1.30961 1.08500 1.18118 1.24106 1.01262 0.72773 0.73438 0.72992 1.93523 1.60376 1.54569 1.86906 1.93567 1.60252 1.87006 1.57227 1.55256 1.47958 1.44716 1.38285 1.18781 0.84255 0.86975 0.96358 1.21679 1.13545 1.07974 1.15992 0.90164 1.26031 0.98475 0.94844 1.00256 1.70160 1.28699 1.14880 1.42665 0.85205 0.77885 0.78825 0.77883 1.17906 1.20199 1.20614 1.21488 0.89027 1.02039 0.85615 0.88818 0.89337 0.88476 0.78683 0.69960 0.74097 0.97578 0.97493 0.92402 0.79907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.00 71.23 0.71 -0.08 16 2 C -0.12 -1.96 5.87 -19.90 -0.12 -2.07 16 3 C 0.03 0.59 9.26 22.53 0.21 0.79 16 4 C -0.20 -5.95 5.88 -20.06 -0.12 -6.07 16 5 C 0.53 16.43 8.27 70.28 0.58 17.01 16 6 O -0.54 -22.86 16.13 19.89 0.32 -22.54 16 7 O -0.49 -8.99 12.68 -56.42 -0.72 -9.71 16 8 C 0.21 8.33 6.78 22.69 0.15 8.49 16 9 F -0.12 -5.81 11.21 44.97 0.50 -5.31 16 10 C -0.73 -24.67 5.89 22.28 0.13 -24.54 16 11 S 2.71 106.03 5.48 -56.49 -0.31 105.72 16 12 O -0.96 -34.73 16.96 -128.00 -2.17 -36.90 16 13 O -0.99 -47.32 16.90 -128.00 -2.16 -49.48 16 14 N -1.10 -47.45 5.99 -190.77 -1.14 -48.60 16 15 C 0.26 14.25 4.31 85.63 0.37 14.62 16 16 C -0.55 -31.24 9.27 25.60 0.24 -31.00 16 17 H 0.08 4.18 7.65 -2.91 -0.02 4.16 16 18 C 0.00 0.22 5.46 84.65 0.46 0.69 16 19 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 20 Si 0.98 44.09 29.54 68.60 2.03 46.12 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.04 0.86 9.19 22.32 0.21 1.07 16 25 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.09 0.48 8.08 -2.39 -0.02 0.46 16 27 H 0.10 0.31 8.08 -2.39 -0.02 0.29 16 28 H 0.20 1.98 7.61 -2.91 -0.02 1.96 16 29 H 0.44 4.32 9.11 -74.05 -0.67 3.65 16 30 H 0.42 15.87 8.54 -96.75 -0.83 15.05 16 31 H 0.01 0.37 6.74 -2.39 -0.02 0.35 16 32 H 0.01 0.44 7.25 -2.38 -0.02 0.42 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.18 3.25 7.32 -2.91 -0.02 3.23 16 Total: -1.00 -86.51 316.49 -0.85 -87.36 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -0.31 Total: 11.62 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 2.83 Total: -21.10 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -0.86 Total: -105.78 kcal Atomic # 8 Polarization: -113.90 SS G_CDS: -4.73 Total: -118.63 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.50 Total: -5.31 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 106.03 SS G_CDS: -0.31 Total: 105.72 kcal Total: -86.51 -0.85 -87.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447146702.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.210 kcal (2) G-P(sol) polarization free energy of solvation -86.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds