Wall clock time and date at job start Tue Mar 31 2020 10:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99878 * 2 1 4 4 C 1.53001 * 109.47159 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46645 * 65.00339 * 4 3 2 6 6 C 1.36022 * 120.00241 * 264.28552 * 5 4 3 7 7 H 1.07997 * 119.99955 * 132.70920 * 6 5 4 8 8 C 1.39689 * 119.99868 * 312.71596 * 6 5 4 9 9 N 1.30956 * 120.00062 * 2.92294 * 8 6 5 10 10 Si 1.86805 * 119.99871 * 182.93316 * 8 6 5 11 11 H 1.48498 * 109.47055 * 89.99623 * 10 8 6 12 12 H 1.48497 * 109.46918 * 209.99645 * 10 8 6 13 13 H 1.48494 * 109.47183 * 329.99801 * 10 8 6 14 14 C 1.34777 * 120.00127 * 84.28924 * 5 4 3 15 15 O 1.21559 * 120.00079 * 5.02408 * 14 5 4 16 16 C 1.48442 * 120.00210 * 185.02198 * 14 5 4 17 17 O 1.21752 * 120.00188 * 354.44617 * 16 14 5 18 18 C 1.41487 * 119.99642 * 174.44390 * 16 14 5 19 19 C 1.37490 * 125.46726 * 179.97438 * 18 16 14 20 20 C 1.36991 * 113.24178 * 179.97438 * 19 18 16 21 21 C 1.34420 * 115.12558 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 124.50527 * 179.97438 * 21 20 19 23 23 S 1.70610 * 110.98636 * 0.02562 * 21 20 19 24 24 H 1.09002 * 109.47071 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46638 * 299.99261 * 1 2 3 26 26 H 1.08994 * 109.47761 * 59.99716 * 1 2 3 27 27 H 1.09003 * 109.46632 * 60.00465 * 3 2 1 28 28 H 1.09001 * 109.47363 * 300.00557 * 3 2 1 29 29 H 1.08999 * 109.47440 * 305.00658 * 4 3 2 30 30 H 1.09000 * 109.47047 * 184.99793 * 4 3 2 31 31 H 0.96997 * 119.99853 * 180.02562 * 9 8 6 32 32 H 1.08005 * 123.37724 * 0.02562 * 19 18 16 33 33 H 1.08003 * 122.43624 * 179.73690 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9755 0.5646 -1.2528 6 6 4.2078 -0.7747 -1.3037 7 1 3.8022 -1.3627 -2.1136 8 6 4.9708 -1.3895 -0.3081 9 7 5.4143 -0.6873 0.7044 10 14 5.3586 -3.2133 -0.4212 11 1 6.6293 -3.4039 -1.1656 12 1 5.4969 -3.7757 0.9463 13 1 4.2581 -3.9102 -1.1341 14 6 4.1504 1.3211 -2.3545 15 8 4.0320 2.5290 -2.2874 16 6 4.4877 0.6792 -3.6498 17 8 4.7059 -0.5176 -3.6976 18 6 4.5557 1.4584 -4.8288 19 6 4.8572 0.9828 -6.0831 20 6 4.8527 1.9570 -7.0461 21 6 4.5581 3.1927 -6.6066 22 17 4.4851 4.6037 -7.6152 23 16 4.2669 3.1900 -4.9256 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 3.8515 0.5682 0.8408 30 1 3.9785 2.1766 0.0889 31 1 5.9444 -1.1142 1.3955 32 1 5.0749 -0.0550 -6.2885 33 1 5.0738 1.7481 -8.0825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457209345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:54 Heat of formation + Delta-G solvation = -63.892712 kcal Electronic energy + Delta-G solvation = -22104.192598 eV Core-core repulsion = 18477.323020 eV Total energy + Delta-G solvation = -3626.869578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.67135 -38.08231 -37.26423 -36.75360 -36.20962 -34.99629 -31.84373 -29.64552 -29.45998 -26.05554 -25.76445 -24.73427 -23.37850 -21.64447 -19.61481 -18.99620 -18.34273 -16.57930 -16.23530 -15.71425 -15.60627 -15.24333 -14.80466 -14.64681 -14.43378 -14.23709 -13.72388 -13.48470 -13.21933 -13.10168 -12.53418 -12.29010 -12.02554 -11.71679 -11.40043 -11.30818 -11.21916 -11.10930 -11.02744 -11.01868 -10.63679 -10.37848 -10.21052 -9.83813 -9.19549 -9.06459 -8.43024 -8.36526 -8.29313 -7.59499 -6.47162 -4.16096 0.43814 1.36491 2.14956 2.17677 2.37166 2.88520 3.19390 3.23792 3.27456 3.96712 4.23169 4.29567 4.46799 4.93603 5.27561 5.42421 5.53577 5.61011 5.67553 5.78680 5.91660 5.97421 5.99602 6.09756 6.21465 6.35040 6.41693 6.58266 7.18382 7.43658 7.68231 7.85642 7.94708 8.42222 8.90269 9.19436 9.63351 10.50574 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.004393 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.383851 B = 6372.957632 C = 7343.547733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.052 3.948 4 C 0.098 3.902 5 N -0.368 5.368 6 C -0.300 4.300 7 H 0.110 0.890 8 C 0.048 3.952 9 N -0.857 5.857 10 Si 0.932 3.068 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.265 1.265 14 C 0.406 3.594 15 O -0.598 6.598 16 C 0.392 3.608 17 O -0.408 6.408 18 C -0.271 4.271 19 C -0.066 4.066 20 C -0.146 4.146 21 C -0.213 4.213 22 Cl -0.029 7.029 23 S 0.367 5.633 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.275 0.725 32 H 0.155 0.845 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 4.908 -7.595 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.025 4.025 4 C -0.025 4.025 5 N -0.084 5.084 6 C -0.429 4.429 7 H 0.127 0.873 8 C -0.159 4.159 9 N -0.494 5.494 10 Si 0.758 3.242 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.189 1.189 14 C 0.196 3.804 15 O -0.488 6.488 16 C 0.268 3.732 17 O -0.282 6.282 18 C -0.392 4.392 19 C -0.099 4.099 20 C -0.179 4.179 21 C -0.360 4.360 22 Cl 0.000 7.000 23 S 0.635 5.365 24 H 0.097 0.903 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.216 5.921 -6.417 9.696 hybrid contribution 0.370 -1.563 -1.253 2.038 sum -3.846 4.358 -7.671 9.624 Atomic orbital electron populations 1.22654 0.83162 1.01888 0.98910 1.88132 1.17616 1.27649 1.95071 1.22997 0.96047 0.84465 0.98991 1.21914 0.89449 0.99937 0.91174 1.43254 1.50029 1.07858 1.07280 1.19999 1.29232 0.82286 1.11414 0.87259 1.25695 0.94672 1.00808 0.94759 1.69461 1.32552 1.37336 1.10063 0.85834 0.79458 0.81423 0.77486 1.19962 1.20835 1.18931 1.20270 0.85755 0.87069 0.87336 1.90518 1.59648 1.13521 1.85096 1.19879 0.77526 0.88158 0.87683 1.90651 1.34949 1.15620 1.86977 1.24285 1.15798 0.99687 0.99397 1.20684 0.98444 1.00874 0.89888 1.19890 1.05789 0.90555 1.01665 1.26130 1.14167 0.93085 1.02599 1.98336 1.97062 1.37174 1.67458 1.84307 1.58717 1.02057 0.91414 0.90301 0.95020 0.94950 0.93709 0.94081 0.85184 0.90554 0.91401 0.82765 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.56 10.44 -35.23 -0.37 -7.93 16 3 C 0.05 1.04 6.24 37.16 0.23 1.27 16 4 C 0.10 2.24 5.27 -4.04 -0.02 2.22 16 5 N -0.37 -9.21 2.45 -115.71 -0.28 -9.49 16 6 C -0.30 -7.77 7.43 -15.15 -0.11 -7.89 16 7 H 0.11 2.91 6.14 -52.49 -0.32 2.59 16 8 C 0.05 1.22 5.35 -17.38 -0.09 1.12 16 9 N -0.86 -21.98 10.93 55.53 0.61 -21.37 16 10 Si 0.93 20.24 29.56 -169.99 -5.02 15.22 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 14 C 0.41 9.81 7.59 -12.06 -0.09 9.72 16 15 O -0.60 -14.26 14.10 5.31 0.07 -14.19 16 16 C 0.39 8.78 6.88 -34.14 -0.24 8.54 16 17 O -0.41 -9.71 13.89 5.14 0.07 -9.63 16 18 C -0.27 -5.08 6.24 -38.62 -0.24 -5.32 16 19 C -0.07 -1.04 9.96 -40.31 -0.40 -1.45 16 20 C -0.15 -2.02 10.08 -41.38 -0.42 -2.44 16 21 C -0.21 -3.07 6.83 29.38 0.20 -2.87 16 22 Cl -0.03 -0.35 29.27 -51.86 -1.52 -1.87 16 23 S 0.37 6.08 20.58 -107.50 -2.21 3.87 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.13 3.20 5.46 -51.93 -0.28 2.92 16 30 H 0.08 1.72 7.53 -51.93 -0.39 1.33 16 31 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 32 H 0.15 2.24 8.03 -52.48 -0.42 1.82 16 33 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -27.98 319.66 -6.99 -34.98 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -3.09 Total: 1.09 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.07 Total: 4.51 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.32 Total: -30.86 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.22 Total: -31.75 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -2.21 Total: 3.87 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.98 -6.99 -34.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.917 kcal (2) G-P(sol) polarization free energy of solvation -27.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds