Wall clock time and date at job start Tue Mar 31 2020 10:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99878 * 2 1 4 4 C 1.53001 * 109.47159 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46645 * 65.00339 * 4 3 2 6 6 C 1.36022 * 120.00241 * 264.28552 * 5 4 3 7 7 H 1.07997 * 119.99955 * 132.70920 * 6 5 4 8 8 C 1.39689 * 119.99868 * 312.71596 * 6 5 4 9 9 N 1.30956 * 120.00062 * 2.92294 * 8 6 5 10 10 Si 1.86805 * 119.99871 * 182.93316 * 8 6 5 11 11 H 1.48498 * 109.47055 * 89.99623 * 10 8 6 12 12 H 1.48497 * 109.46918 * 209.99645 * 10 8 6 13 13 H 1.48494 * 109.47183 * 329.99801 * 10 8 6 14 14 C 1.34777 * 120.00127 * 84.28924 * 5 4 3 15 15 O 1.21559 * 120.00079 * 5.02408 * 14 5 4 16 16 C 1.48442 * 120.00210 * 185.02198 * 14 5 4 17 17 O 1.21752 * 120.00188 * 354.44617 * 16 14 5 18 18 C 1.41487 * 119.99642 * 174.44390 * 16 14 5 19 19 C 1.37490 * 125.46726 * 179.97438 * 18 16 14 20 20 C 1.36991 * 113.24178 * 179.97438 * 19 18 16 21 21 C 1.34420 * 115.12558 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 124.50527 * 179.97438 * 21 20 19 23 23 S 1.70610 * 110.98636 * 0.02562 * 21 20 19 24 24 H 1.09002 * 109.47071 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46638 * 299.99261 * 1 2 3 26 26 H 1.08994 * 109.47761 * 59.99716 * 1 2 3 27 27 H 1.09003 * 109.46632 * 60.00465 * 3 2 1 28 28 H 1.09001 * 109.47363 * 300.00557 * 3 2 1 29 29 H 1.08999 * 109.47440 * 305.00658 * 4 3 2 30 30 H 1.09000 * 109.47047 * 184.99793 * 4 3 2 31 31 H 0.96997 * 119.99853 * 180.02562 * 9 8 6 32 32 H 1.08005 * 123.37724 * 0.02562 * 19 18 16 33 33 H 1.08003 * 122.43624 * 179.73690 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9755 0.5646 -1.2528 6 6 4.2078 -0.7747 -1.3037 7 1 3.8022 -1.3627 -2.1136 8 6 4.9708 -1.3895 -0.3081 9 7 5.4143 -0.6873 0.7044 10 14 5.3586 -3.2133 -0.4212 11 1 6.6293 -3.4039 -1.1656 12 1 5.4969 -3.7757 0.9463 13 1 4.2581 -3.9102 -1.1341 14 6 4.1504 1.3211 -2.3545 15 8 4.0320 2.5290 -2.2874 16 6 4.4877 0.6792 -3.6498 17 8 4.7059 -0.5176 -3.6976 18 6 4.5557 1.4584 -4.8288 19 6 4.8572 0.9828 -6.0831 20 6 4.8527 1.9570 -7.0461 21 6 4.5581 3.1927 -6.6066 22 17 4.4851 4.6037 -7.6152 23 16 4.2669 3.1900 -4.9256 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 3.8515 0.5682 0.8408 30 1 3.9785 2.1766 0.0889 31 1 5.9444 -1.1142 1.3955 32 1 5.0749 -0.0550 -6.2885 33 1 5.0738 1.7481 -8.0825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457209345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:53 Heat of formation + Delta-G solvation = -80.299655 kcal Electronic energy + Delta-G solvation = -22104.904057 eV Core-core repulsion = 18477.323020 eV Total energy + Delta-G solvation = -3627.581037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42667 -39.63542 -38.64926 -38.31188 -37.48873 -36.79696 -33.70723 -31.17645 -31.02243 -27.48829 -27.32278 -26.40092 -24.89263 -23.20324 -21.34568 -20.33218 -20.04534 -18.18666 -17.91187 -17.31601 -17.12059 -16.70816 -16.49636 -16.30169 -16.07732 -15.73889 -15.27829 -14.96662 -14.74422 -14.31473 -14.15173 -13.64341 -13.58286 -13.39873 -13.20195 -12.88096 -12.80539 -12.51652 -12.49324 -12.34742 -12.12889 -11.97956 -11.82223 -11.44841 -11.02518 -10.54263 -10.10430 -9.73117 -9.65810 -9.44860 -8.33292 -6.11622 -0.95585 0.08993 0.61700 0.90463 1.14185 1.42575 1.44451 1.55596 1.57567 2.23255 2.48920 2.53595 2.98332 3.09019 3.73387 4.08944 4.19590 4.24340 4.33869 4.41737 4.52257 4.58225 4.60305 4.76443 4.77767 4.84919 5.03075 5.19598 5.34110 5.53296 5.89632 6.14407 6.40051 6.53626 7.00542 7.33423 7.75206 8.64655 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.004393 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.383851 B = 6372.957632 C = 7343.547733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.063 3.937 4 C 0.097 3.903 5 N -0.384 5.384 6 C -0.319 4.319 7 H 0.095 0.905 8 C 0.011 3.989 9 N -0.884 5.884 10 Si 0.986 3.014 11 H -0.276 1.276 12 H -0.272 1.272 13 H -0.265 1.265 14 C 0.396 3.604 15 O -0.601 6.601 16 C 0.401 3.599 17 O -0.433 6.433 18 C -0.319 4.319 19 C -0.036 4.036 20 C -0.142 4.142 21 C -0.192 4.192 22 Cl -0.001 7.001 23 S 0.350 5.650 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.277 0.723 32 H 0.168 0.832 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.469 5.313 -9.691 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C -0.014 4.014 4 C -0.026 4.026 5 N -0.100 5.100 6 C -0.448 4.448 7 H 0.113 0.887 8 C -0.194 4.194 9 N -0.521 5.521 10 Si 0.809 3.191 11 H -0.202 1.202 12 H -0.197 1.197 13 H -0.189 1.189 14 C 0.185 3.815 15 O -0.491 6.491 16 C 0.278 3.722 17 O -0.309 6.309 18 C -0.439 4.439 19 C -0.071 4.071 20 C -0.174 4.174 21 C -0.339 4.339 22 Cl 0.028 6.972 23 S 0.618 5.382 24 H 0.111 0.889 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.130 0.870 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.186 0.814 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.610 6.347 -8.494 11.562 hybrid contribution 0.450 -1.465 -0.866 1.761 sum -4.159 4.882 -9.360 11.346 Atomic orbital electron populations 1.22889 0.80479 1.03366 1.00359 1.88072 1.20627 1.27955 1.95352 1.22826 0.93928 0.84659 0.99996 1.21869 0.91763 0.98807 0.90135 1.43412 1.50799 1.07849 1.07960 1.19876 1.30606 0.82781 1.11587 0.88718 1.26360 0.94387 1.04184 0.94428 1.69550 1.33425 1.38555 1.10619 0.85041 0.78852 0.77394 0.77767 1.20184 1.19675 1.18876 1.20817 0.85246 0.87314 0.88134 1.90493 1.59359 1.13577 1.85655 1.19922 0.76055 0.88127 0.88143 1.90629 1.36292 1.16492 1.87501 1.24013 1.20209 1.00633 0.99052 1.21010 0.95087 1.01990 0.88965 1.20172 1.04859 0.89486 1.02901 1.26172 1.11783 0.94318 1.01647 1.98360 1.96761 1.35815 1.66311 1.84297 1.59395 1.01014 0.93456 0.88917 0.92683 0.94258 0.90727 0.94746 0.86999 0.91245 0.91221 0.81428 0.80350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.63 10.44 -148.98 -1.56 -18.19 16 3 C 0.06 2.53 6.24 71.98 0.45 2.98 16 4 C 0.10 4.59 5.27 86.38 0.46 5.05 16 5 N -0.38 -19.89 2.45 -638.27 -1.56 -21.46 16 6 C -0.32 -17.15 7.43 84.39 0.63 -16.52 16 7 H 0.10 5.26 6.14 -2.91 -0.02 5.24 16 8 C 0.01 0.55 5.35 85.17 0.46 1.01 16 9 N -0.88 -46.74 10.93 21.78 0.24 -46.51 16 10 Si 0.99 42.26 29.56 68.60 2.03 44.28 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 13 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 14 C 0.40 19.70 7.59 86.96 0.66 20.36 16 15 O -0.60 -29.31 14.10 -3.90 -0.06 -29.37 16 16 C 0.40 18.27 6.88 25.79 0.18 18.45 16 17 O -0.43 -21.11 13.89 -4.52 -0.06 -21.17 16 18 C -0.32 -11.77 6.24 22.89 0.14 -11.63 16 19 C -0.04 -1.06 9.96 21.80 0.22 -0.84 16 20 C -0.14 -3.41 10.08 21.10 0.21 -3.19 16 21 C -0.19 -4.94 6.83 66.95 0.46 -4.48 16 22 Cl 0.00 -0.02 29.27 -2.72 -0.08 -0.10 16 23 S 0.35 11.22 20.58 -56.49 -1.16 10.06 16 24 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.11 5.74 5.46 -2.39 -0.01 5.73 16 30 H 0.07 3.27 7.53 -2.39 -0.02 3.25 16 31 H 0.28 13.72 8.30 -92.71 -0.77 12.95 16 32 H 0.17 4.45 8.03 -2.91 -0.02 4.42 16 33 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -61.91 319.66 4.05 -57.87 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.16 Total: 11.42 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 5.10 Total: 13.16 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -1.33 Total: -67.96 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -1.67 Total: -68.73 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 11.22 SS G_CDS: -1.16 Total: 10.06 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.08 Total: -0.10 kcal Total: -61.91 4.05 -57.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.434 kcal (2) G-P(sol) polarization free energy of solvation -61.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds