Wall clock time and date at job start Tue Mar 31 2020 11:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 108.57856 * 2 1 4 4 O 1.42094 * 108.57963 * 228.96956 * 2 1 3 5 5 C 1.81399 * 101.91796 * 114.48434 * 2 1 3 6 6 C 1.50706 * 109.47100 * 180.02562 * 5 2 1 7 7 O 1.21281 * 120.00010 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00065 * 180.02562 * 6 5 2 9 9 C 1.39149 * 119.99975 * 175.55133 * 8 6 5 10 10 C 1.38604 * 120.21374 * 28.68137 * 9 8 6 11 11 C 1.38187 * 120.17360 * 179.97438 * 10 9 8 12 12 C 1.39001 * 120.60311 * 0.02562 * 11 10 9 13 13 Cl 1.73601 * 119.78915 * 180.02562 * 12 11 10 14 14 C 1.37549 * 120.41974 * 359.73643 * 12 11 10 15 15 C 1.40740 * 119.80871 * 0.49381 * 14 12 11 16 16 C 1.41068 * 120.28971 * 179.78767 * 15 14 12 17 17 H 1.07995 * 119.99983 * 207.50635 * 16 15 14 18 18 C 1.39954 * 119.99894 * 27.78415 * 16 15 14 19 19 N 1.30858 * 119.99994 * 12.24116 * 18 16 15 20 20 Si 1.86805 * 120.00019 * 192.23772 * 18 16 15 21 21 H 1.48504 * 109.46889 * 90.00009 * 20 18 16 22 22 H 1.48492 * 109.47043 * 209.99894 * 20 18 16 23 23 H 1.48503 * 109.46997 * 330.00203 * 20 18 16 24 24 H 1.08999 * 109.47537 * 305.51694 * 1 2 3 25 25 H 1.09006 * 109.46679 * 65.51378 * 1 2 3 26 26 H 1.08999 * 109.46836 * 185.51310 * 1 2 3 27 27 H 1.08997 * 109.47344 * 60.00634 * 5 2 1 28 28 H 1.09000 * 109.47153 * 300.00057 * 5 2 1 29 29 H 0.97007 * 120.00044 * 355.54597 * 8 6 5 30 30 H 1.08003 * 119.91397 * 359.97438 * 10 9 8 31 31 H 1.07998 * 119.69602 * 180.02562 * 11 10 9 32 32 H 1.08000 * 120.09248 * 180.26082 * 14 12 11 33 33 H 0.96998 * 119.99871 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0160 5 6 2.1886 -0.7356 1.6153 6 6 3.6826 -0.8171 1.7958 7 8 4.4218 -0.4187 0.9208 8 7 4.1972 -1.3337 2.9293 9 6 5.5733 -1.4946 3.0584 10 6 6.4407 -0.6518 2.3814 11 6 7.8072 -0.8120 2.5107 12 6 8.3287 -1.8165 3.3175 13 17 10.0488 -1.9983 3.4652 14 6 7.4905 -2.6637 4.0044 15 6 6.0959 -2.5194 3.8815 16 6 5.2270 -3.3855 4.5779 17 1 4.2424 -3.5926 4.1855 18 6 5.6387 -3.9717 5.7801 19 7 6.7181 -3.5414 6.3820 20 14 4.6474 -5.3685 6.5258 21 1 5.1529 -6.6654 6.0084 22 1 4.7841 -5.3382 8.0041 23 1 3.2173 -5.2121 6.1575 24 1 -0.3634 0.5970 0.8364 25 1 -0.3633 0.4260 -0.9353 26 1 -0.3633 -1.0229 0.0987 27 1 1.7610 -1.7369 1.6665 28 1 1.7609 -0.1170 2.4042 29 1 3.6083 -1.5933 3.6551 30 1 6.0476 0.1322 1.7511 31 1 8.4760 -0.1506 1.9799 32 1 7.9015 -3.4397 4.6331 33 1 7.0036 -3.9480 7.2150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565198631.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:22 Heat of formation + Delta-G solvation = -88.327608 kcal Electronic energy + Delta-G solvation = -21741.159421 eV Core-core repulsion = 18113.230266 eV Total energy + Delta-G solvation = -3627.929155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90637 -37.54071 -36.97141 -35.97588 -35.51909 -34.02731 -33.73387 -30.97108 -29.88882 -29.65389 -27.89993 -25.47067 -22.22744 -21.17616 -19.85528 -18.87422 -17.76473 -17.28318 -17.01018 -16.32233 -15.95393 -15.82687 -15.36797 -14.95131 -14.68725 -13.86963 -13.56179 -13.50822 -13.43011 -13.01782 -12.82447 -12.57842 -12.20011 -12.02350 -11.96090 -11.78603 -11.55903 -11.35706 -11.21899 -10.99479 -10.87441 -10.63259 -10.55387 -10.33120 -9.79027 -9.51570 -9.43186 -9.02702 -7.66029 -7.15626 -6.85946 -4.64215 -0.20176 2.22445 2.64322 2.64943 2.92674 2.94412 2.99345 3.02611 3.24223 3.34762 3.72832 3.89557 3.90677 4.38135 4.52341 4.53541 4.73864 4.92214 5.09749 5.34391 5.35322 6.22094 6.33182 6.60921 6.72247 6.88790 6.91933 7.23495 7.42165 7.59070 7.67889 7.81571 8.06455 8.23280 8.47618 8.57619 8.66845 9.96073 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.004406 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.527063 B = 6353.594124 C = 8267.115737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.666 4.666 2 S 2.458 3.542 3 O -0.923 6.923 4 O -0.921 6.921 5 C -0.656 4.656 6 C 0.523 3.477 7 O -0.528 6.528 8 N -0.620 5.620 9 C 0.012 3.988 10 C -0.082 4.082 11 C -0.215 4.215 12 C -0.012 4.012 13 Cl -0.122 7.122 14 C -0.140 4.140 15 C 0.111 3.889 16 C -0.465 4.465 17 H 0.080 0.920 18 C 0.076 3.924 19 N -0.786 5.786 20 Si 0.914 3.086 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.263 1.263 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.158 0.842 28 H 0.156 0.844 29 H 0.409 0.591 30 H 0.132 0.868 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.379 2.243 -2.851 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.814 4.814 2 S 2.634 3.366 3 O -0.920 6.920 4 O -0.918 6.918 5 C -0.784 4.784 6 C 0.308 3.692 7 O -0.407 6.407 8 N -0.261 5.261 9 C -0.082 4.082 10 C -0.102 4.102 11 C -0.235 4.235 12 C -0.039 4.039 13 Cl -0.094 7.094 14 C -0.161 4.161 15 C 0.107 3.893 16 C -0.494 4.494 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.411 5.411 20 Si 0.738 3.262 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.187 1.187 24 H 0.147 0.853 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.176 0.824 28 H 0.174 0.826 29 H 0.245 0.755 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.154 0.846 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.030 2.745 -3.846 12.000 hybrid contribution -1.244 -1.178 1.647 2.376 sum -12.274 1.567 -2.199 12.568 Atomic orbital electron populations 1.30427 1.27626 1.11546 1.11814 1.07083 0.77236 0.75843 0.76427 1.93589 1.78591 1.34230 1.85597 1.93596 1.78516 1.67158 1.52565 1.30850 1.03854 1.16207 1.27487 1.19063 0.87100 0.79934 0.83148 1.90780 1.59785 1.48190 1.41963 1.42697 1.07451 1.59909 1.16071 1.17792 0.80785 0.99921 1.09751 1.20860 0.91873 0.98354 0.99108 1.20218 0.94510 1.02402 1.06378 1.20806 0.81440 0.99953 1.01660 1.98258 1.16167 1.97492 1.97460 1.21109 0.91946 1.00956 1.02051 1.17238 0.91869 0.89215 0.91011 1.19321 1.01472 1.23929 1.04674 0.90174 1.25913 0.95137 0.96659 0.96643 1.69779 1.20914 1.35383 1.14984 0.86216 0.80501 0.81170 0.78300 1.19119 1.20128 1.18681 0.85339 0.85103 0.85307 0.82435 0.82560 0.75487 0.85080 0.87702 0.84613 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.51 10.62 101.05 1.07 -2.44 16 2 S 2.46 27.49 4.60 -107.50 -0.49 27.00 16 3 O -0.92 -14.14 17.95 -59.53 -1.07 -15.20 16 4 O -0.92 -14.46 17.95 -59.52 -1.07 -15.53 16 5 C -0.66 -6.66 6.29 36.01 0.23 -6.43 16 6 C 0.52 9.11 7.72 -10.98 -0.08 9.03 16 7 O -0.53 -11.32 12.68 2.56 0.03 -11.29 16 8 N -0.62 -11.52 5.03 -9.48 -0.05 -11.57 16 9 C 0.01 0.26 6.44 -83.18 -0.54 -0.27 16 10 C -0.08 -1.90 8.74 -39.46 -0.34 -2.25 16 11 C -0.21 -4.91 9.82 -39.32 -0.39 -5.29 16 12 C -0.01 -0.28 6.31 -39.55 -0.25 -0.53 16 13 Cl -0.12 -2.51 28.94 -51.86 -1.50 -4.01 16 14 C -0.14 -3.46 8.42 -38.89 -0.33 -3.78 16 15 C 0.11 2.69 5.57 -106.66 -0.59 2.10 16 16 C -0.46 -10.70 8.35 -37.87 -0.32 -11.02 16 17 H 0.08 1.69 7.26 -52.49 -0.38 1.31 16 18 C 0.08 1.69 5.23 -17.32 -0.09 1.60 16 19 N -0.79 -18.54 10.85 55.55 0.60 -17.94 16 20 Si 0.91 16.72 29.58 -169.99 -5.03 11.69 16 21 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 22 H -0.28 -5.02 7.11 56.52 0.40 -4.62 16 23 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 24 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 25 H 0.13 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.16 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.16 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.41 6.44 7.72 -40.82 -0.32 6.13 16 30 H 0.13 3.02 5.72 -52.48 -0.30 2.72 16 31 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.14 3.47 6.20 -52.49 -0.33 3.14 16 33 H 0.29 6.16 8.30 -40.82 -0.34 5.83 16 LS Contribution 316.36 15.07 4.77 4.77 Total: -1.00 -34.12 316.36 -8.43 -42.55 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -2.99 Total: 8.82 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.63 Total: -19.28 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 0.56 Total: -29.51 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -2.10 Total: -42.02 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 27.49 SS G_CDS: -0.49 Total: 27.00 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -1.50 Total: -4.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.12 -8.43 -42.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565198631.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.779 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds