Wall clock time and date at job start Tue Mar 31 2020 11:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 108.57856 * 2 1 4 4 O 1.42094 * 108.57963 * 228.96956 * 2 1 3 5 5 C 1.81399 * 101.91796 * 114.48434 * 2 1 3 6 6 C 1.50706 * 109.47100 * 180.02562 * 5 2 1 7 7 O 1.21281 * 120.00010 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00065 * 180.02562 * 6 5 2 9 9 C 1.39149 * 119.99975 * 175.55133 * 8 6 5 10 10 C 1.38604 * 120.21374 * 28.68137 * 9 8 6 11 11 C 1.38187 * 120.17360 * 179.97438 * 10 9 8 12 12 C 1.39001 * 120.60311 * 0.02562 * 11 10 9 13 13 Cl 1.73601 * 119.78915 * 180.02562 * 12 11 10 14 14 C 1.37549 * 120.41974 * 359.73643 * 12 11 10 15 15 C 1.40740 * 119.80871 * 0.49381 * 14 12 11 16 16 C 1.41068 * 120.28971 * 179.78767 * 15 14 12 17 17 H 1.07995 * 119.99983 * 207.50635 * 16 15 14 18 18 C 1.39954 * 119.99894 * 27.78415 * 16 15 14 19 19 N 1.30858 * 119.99994 * 12.24116 * 18 16 15 20 20 Si 1.86805 * 120.00019 * 192.23772 * 18 16 15 21 21 H 1.48504 * 109.46889 * 90.00009 * 20 18 16 22 22 H 1.48492 * 109.47043 * 209.99894 * 20 18 16 23 23 H 1.48503 * 109.46997 * 330.00203 * 20 18 16 24 24 H 1.08999 * 109.47537 * 305.51694 * 1 2 3 25 25 H 1.09006 * 109.46679 * 65.51378 * 1 2 3 26 26 H 1.08999 * 109.46836 * 185.51310 * 1 2 3 27 27 H 1.08997 * 109.47344 * 60.00634 * 5 2 1 28 28 H 1.09000 * 109.47153 * 300.00057 * 5 2 1 29 29 H 0.97007 * 120.00044 * 355.54597 * 8 6 5 30 30 H 1.08003 * 119.91397 * 359.97438 * 10 9 8 31 31 H 1.07998 * 119.69602 * 180.02562 * 11 10 9 32 32 H 1.08000 * 120.09248 * 180.26082 * 14 12 11 33 33 H 0.96998 * 119.99871 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0160 5 6 2.1886 -0.7356 1.6153 6 6 3.6826 -0.8171 1.7958 7 8 4.4218 -0.4187 0.9208 8 7 4.1972 -1.3337 2.9293 9 6 5.5733 -1.4946 3.0584 10 6 6.4407 -0.6518 2.3814 11 6 7.8072 -0.8120 2.5107 12 6 8.3287 -1.8165 3.3175 13 17 10.0488 -1.9983 3.4652 14 6 7.4905 -2.6637 4.0044 15 6 6.0959 -2.5194 3.8815 16 6 5.2270 -3.3855 4.5779 17 1 4.2424 -3.5926 4.1855 18 6 5.6387 -3.9717 5.7801 19 7 6.7181 -3.5414 6.3820 20 14 4.6474 -5.3685 6.5258 21 1 5.1529 -6.6654 6.0084 22 1 4.7841 -5.3382 8.0041 23 1 3.2173 -5.2121 6.1575 24 1 -0.3634 0.5970 0.8364 25 1 -0.3633 0.4260 -0.9353 26 1 -0.3633 -1.0229 0.0987 27 1 1.7610 -1.7369 1.6665 28 1 1.7609 -0.1170 2.4042 29 1 3.6083 -1.5933 3.6551 30 1 6.0476 0.1322 1.7511 31 1 8.4760 -0.1506 1.9799 32 1 7.9015 -3.4397 4.6331 33 1 7.0036 -3.9480 7.2150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565198631.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:21 Heat of formation + Delta-G solvation = -114.356524 kcal Electronic energy + Delta-G solvation = -21742.288119 eV Core-core repulsion = 18113.230266 eV Total energy + Delta-G solvation = -3629.057853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40652 -39.22652 -37.94363 -37.24959 -36.93232 -35.65936 -35.40764 -32.05557 -31.65789 -30.29589 -29.40079 -27.21037 -23.86391 -22.86196 -21.40837 -19.79358 -19.39843 -18.74322 -18.24900 -17.37683 -17.21059 -16.97876 -16.69268 -16.32531 -16.19288 -15.39493 -15.00492 -14.63264 -14.37292 -14.13595 -13.90428 -13.84455 -13.60780 -13.44765 -13.21689 -13.01665 -12.96072 -12.88024 -12.60368 -12.33521 -12.18992 -12.07186 -11.93517 -11.61653 -11.47325 -11.12656 -11.06780 -10.67356 -9.48968 -8.87998 -8.56341 -6.41616 -0.98399 0.56314 0.90225 1.44256 1.49783 1.53952 1.55818 1.57078 1.88979 2.12666 2.20252 2.67309 3.01477 3.16101 3.53118 3.60066 4.01973 4.17681 4.33560 4.36648 4.47102 4.53030 4.93031 4.95834 5.03078 5.18423 5.20670 5.47917 5.65425 5.84502 5.90420 6.07227 6.39313 6.57001 6.79589 6.84485 7.18661 8.29719 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.004406 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.527063 B = 6353.594124 C = 8267.115737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 S 2.437 3.563 3 O -0.983 6.983 4 O -0.985 6.985 5 C -0.642 4.642 6 C 0.510 3.490 7 O -0.576 6.576 8 N -0.620 5.620 9 C 0.010 3.990 10 C -0.097 4.097 11 C -0.225 4.225 12 C -0.021 4.021 13 Cl -0.102 7.102 14 C -0.163 4.163 15 C 0.087 3.913 16 C -0.478 4.478 17 H 0.098 0.902 18 C 0.037 3.963 19 N -0.819 5.819 20 Si 0.986 3.014 21 H -0.271 1.271 22 H -0.274 1.274 23 H -0.244 1.244 24 H 0.165 0.835 25 H 0.143 0.857 26 H 0.163 0.837 27 H 0.202 0.798 28 H 0.206 0.794 29 H 0.423 0.577 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.235 1.380 -1.853 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.776 4.776 2 S 2.621 3.379 3 O -0.980 6.980 4 O -0.982 6.982 5 C -0.770 4.770 6 C 0.298 3.702 7 O -0.457 6.457 8 N -0.263 5.263 9 C -0.085 4.085 10 C -0.118 4.118 11 C -0.245 4.245 12 C -0.047 4.047 13 Cl -0.074 7.074 14 C -0.184 4.184 15 C 0.082 3.918 16 C -0.507 4.507 17 H 0.116 0.884 18 C -0.180 4.180 19 N -0.444 5.444 20 Si 0.807 3.193 21 H -0.196 1.196 22 H -0.199 1.199 23 H -0.167 1.167 24 H 0.183 0.817 25 H 0.161 0.839 26 H 0.181 0.819 27 H 0.220 0.780 28 H 0.223 0.777 29 H 0.261 0.739 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.855 1.901 -2.860 15.247 hybrid contribution -0.109 -0.881 1.339 1.607 sum -14.964 1.020 -1.520 15.076 Atomic orbital electron populations 1.30068 1.18460 1.14825 1.14212 1.07212 0.80599 0.74026 0.76064 1.93519 1.81740 1.36458 1.86265 1.93523 1.81750 1.67893 1.55046 1.30818 0.98105 1.19842 1.28241 1.20244 0.90250 0.77961 0.81733 1.90762 1.62086 1.49594 1.43276 1.42715 1.05945 1.60304 1.17286 1.17911 0.83034 0.98990 1.08608 1.20996 0.92376 0.98821 0.99587 1.20403 0.94837 1.02676 1.06584 1.20880 0.82596 0.99797 1.01477 1.98247 1.14304 1.97439 1.97402 1.21094 0.92771 1.01496 1.03071 1.17584 0.92159 0.90178 0.91858 1.19657 1.02098 1.23985 1.04972 0.88442 1.26801 0.95934 0.98521 0.96707 1.69860 1.22427 1.36564 1.15531 0.85119 0.79761 0.77190 0.77229 1.19625 1.19915 1.16695 0.81728 0.83865 0.81880 0.78037 0.77682 0.73856 0.85486 0.86500 0.86055 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -3.06 10.62 113.37 1.20 -1.85 16 2 S 2.44 50.73 4.60 -56.49 -0.26 50.47 16 3 O -0.98 -30.43 17.95 -125.74 -2.26 -32.69 16 4 O -0.98 -31.33 17.95 -125.76 -2.26 -33.58 16 5 C -0.64 -10.83 6.29 71.24 0.45 -10.38 16 6 C 0.51 17.43 7.72 87.66 0.68 18.10 16 7 O -0.58 -25.50 12.68 -0.17 0.00 -25.50 16 8 N -0.62 -22.58 5.03 -302.30 -1.52 -24.10 16 9 C 0.01 0.45 6.44 38.86 0.25 0.70 16 10 C -0.10 -4.70 8.74 22.35 0.20 -4.50 16 11 C -0.22 -10.63 9.82 22.44 0.22 -10.41 16 12 C -0.02 -0.99 6.31 22.29 0.14 -0.85 16 13 Cl -0.10 -4.27 28.94 -2.72 -0.08 -4.35 16 14 C -0.16 -8.34 8.42 22.72 0.19 -8.15 16 15 C 0.09 4.28 5.57 -21.18 -0.12 4.16 16 16 C -0.48 -21.81 8.35 23.38 0.20 -21.62 16 17 H 0.10 3.95 7.26 -2.91 -0.02 3.93 16 18 C 0.04 1.62 5.23 85.25 0.45 2.07 16 19 N -0.82 -38.96 10.85 21.83 0.24 -38.72 16 20 Si 0.99 32.93 29.58 68.60 2.03 34.96 16 21 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 22 H -0.27 -9.00 7.11 99.48 0.71 -8.30 16 23 H -0.24 -7.37 7.11 99.48 0.71 -6.66 16 24 H 0.16 -0.18 8.14 -2.39 -0.02 -0.20 16 25 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.20 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.21 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.42 12.51 7.72 -92.70 -0.72 11.79 16 30 H 0.13 6.17 5.72 -2.91 -0.02 6.15 16 31 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 32 H 0.12 6.44 6.20 -2.91 -0.02 6.42 16 33 H 0.29 12.62 8.30 -92.71 -0.77 11.85 16 Total: -1.00 -81.53 316.36 0.20 -81.32 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.46 Total: 24.92 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 3.85 Total: -32.73 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -1.28 Total: -62.83 kcal Atomic # 8 Polarization: -87.26 SS G_CDS: -4.52 Total: -91.77 kcal Atomic # 14 Polarization: 32.93 SS G_CDS: 2.03 Total: 34.96 kcal Atomic # 16 Polarization: 50.73 SS G_CDS: -0.26 Total: 50.47 kcal Atomic # 17 Polarization: -4.27 SS G_CDS: -0.08 Total: -4.35 kcal Total: -81.53 0.20 -81.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565198631.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.033 kcal (2) G-P(sol) polarization free energy of solvation -81.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds