Wall clock time and date at job start Tue Mar 31 2020 12:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33394 * 125.20329 * 2 1 4 4 C 1.38424 * 114.92088 * 179.79159 * 3 2 1 5 5 C 1.33384 * 114.92146 * 0.43294 * 4 3 2 6 6 S 1.76205 * 125.20013 * 179.86106 * 5 4 3 7 7 O 1.42093 * 106.40312 * 336.17119 * 6 5 4 8 8 O 1.42107 * 106.39763 * 203.25547 * 6 5 4 9 9 N 1.65597 * 107.21859 * 89.71796 * 6 5 4 10 10 C 1.47422 * 125.65221 * 90.01928 * 9 6 5 11 11 C 1.54909 * 104.83344 * 155.83538 * 10 9 6 12 12 C 1.55161 * 101.58238 * 37.01112 * 11 10 9 13 13 O 1.42904 * 110.71840 * 82.85777 * 12 11 10 14 14 C 1.50694 * 110.72066 * 206.13233 * 12 11 10 15 15 H 1.08005 * 119.99837 * 117.25217 * 14 12 11 16 16 C 1.37871 * 120.00098 * 297.24744 * 14 12 11 17 17 N 1.31513 * 120.00390 * 4.85040 * 16 14 12 18 18 Si 1.86812 * 119.99802 * 184.85340 * 16 14 12 19 19 H 1.48499 * 109.47188 * 84.99712 * 18 16 14 20 20 H 1.48498 * 109.46651 * 205.00139 * 18 16 14 21 21 H 1.48498 * 109.46847 * 324.99925 * 18 16 14 22 22 C 1.47023 * 125.64433 * 269.98064 * 9 6 5 23 23 S 1.75881 * 109.59586 * 359.58993 * 5 4 3 24 24 H 1.08999 * 109.46936 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47262 * 299.99994 * 1 2 3 26 26 H 1.08996 * 109.47201 * 60.00428 * 1 2 3 27 27 H 1.08004 * 122.53493 * 0.02562 * 3 2 1 28 28 H 1.08000 * 122.53640 * 180.27069 * 4 3 2 29 29 H 1.09005 * 110.36530 * 36.99672 * 10 9 6 30 30 H 1.09004 * 110.36923 * 274.67761 * 10 9 6 31 31 H 1.09005 * 111.00423 * 155.08701 * 11 10 9 32 32 H 1.09003 * 111.00386 * 278.93809 * 11 10 9 33 33 H 0.96701 * 113.99576 * 54.59722 * 13 12 11 34 34 H 0.96993 * 119.99960 * 180.02562 * 17 16 14 35 35 H 1.08994 * 109.88706 * 300.50850 * 22 9 6 36 36 H 1.09001 * 109.88581 * 61.52411 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0046 5 6 3.9751 -0.4476 -0.0009 6 16 5.6249 -1.0664 -0.0005 7 8 6.4396 -0.0373 -0.5448 8 8 5.5617 -2.3775 -0.5451 9 7 6.0835 -1.2388 1.5813 10 6 5.9011 -2.4499 2.4018 11 6 6.9873 -2.3510 3.5018 12 6 7.0005 -0.8265 3.7903 13 8 5.9577 -0.4754 4.7021 14 6 8.3432 -0.3962 4.3223 15 1 8.9450 0.3063 3.7648 16 6 8.8032 -0.8991 5.5208 17 7 8.1157 -1.8252 6.1526 18 14 10.4032 -0.2650 6.2472 19 1 10.1369 0.9684 7.0301 20 1 10.9871 -1.3001 7.1375 21 1 11.3575 0.0408 5.1512 22 6 6.7407 -0.2094 2.3999 23 16 2.5210 -1.4372 -0.0006 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8668 2.0895 0.0004 28 1 4.3720 1.6351 0.0094 29 1 6.0537 -3.3441 1.7973 30 1 4.9073 -2.4588 2.8495 31 1 6.6972 -2.9141 4.3890 32 1 7.9545 -2.6862 3.1272 33 1 5.9722 -0.9775 5.5284 34 1 8.4392 -2.1787 6.9959 35 1 7.6856 0.0816 1.9412 36 1 6.0908 0.6607 2.4935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592074174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:31 Heat of formation + Delta-G solvation = -88.915316 kcal Electronic energy + Delta-G solvation = -22688.890755 eV Core-core repulsion = 19198.812916 eV Total energy + Delta-G solvation = -3490.077839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.11293 -38.09123 -36.91877 -35.61696 -34.30229 -32.31256 -32.22054 -29.14747 -28.31716 -27.20101 -24.83239 -23.40819 -21.64055 -20.35044 -19.75998 -18.48504 -17.84547 -17.24021 -16.86696 -16.21425 -15.35841 -14.93380 -14.72159 -14.40376 -14.30552 -14.17805 -13.41863 -13.30844 -13.04571 -12.76612 -12.53321 -12.18825 -12.17328 -12.06159 -11.87130 -11.83674 -11.63624 -11.29669 -11.22826 -11.06333 -10.89799 -10.85816 -10.45907 -10.42142 -10.09826 -9.35871 -9.14086 -8.66872 -8.62041 -8.46474 -8.19114 -6.26055 -4.32845 0.34738 0.68083 1.37790 1.69371 2.38848 3.22870 3.29465 3.31054 3.35036 3.97761 4.28459 4.48452 4.63081 4.91245 5.01205 5.16876 5.17849 5.34589 5.40774 5.55543 5.76424 5.81613 5.87309 5.98730 6.01000 6.20206 6.22565 6.34625 6.64175 6.76855 6.93618 7.00765 7.34048 7.39127 7.75572 8.06730 8.68797 9.29987 9.38650 10.81521 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.004045 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.464914 B = 6920.588681 C = 7232.049618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.147 4.147 3 C -0.170 4.170 4 C 0.009 3.991 5 C -0.789 4.789 6 S 2.729 3.271 7 O -0.952 6.952 8 O -0.958 6.958 9 N -1.001 6.001 10 C 0.111 3.889 11 C -0.128 4.128 12 C 0.251 3.749 13 O -0.584 6.584 14 C -0.535 4.535 15 H 0.065 0.935 16 C 0.074 3.926 17 N -0.894 5.894 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.135 3.865 23 S 0.209 5.791 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.379 0.621 34 H 0.267 0.733 35 H 0.077 0.923 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.312 1.377 -9.168 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.267 4.267 3 C -0.200 4.200 4 C -0.026 4.026 5 C -0.988 4.988 6 S 2.816 3.184 7 O -0.943 6.943 8 O -0.948 6.948 9 N -0.841 5.841 10 C -0.013 4.013 11 C -0.168 4.168 12 C 0.210 3.790 13 O -0.392 6.392 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.729 3.271 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.010 3.990 23 S 0.475 5.525 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.165 0.835 28 H 0.171 0.829 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.311 -0.077 -10.331 16.850 hybrid contribution 0.598 1.749 1.265 2.240 sum -12.713 1.672 -9.067 15.704 Atomic orbital electron populations 1.20450 0.87294 1.03417 1.03536 1.25139 1.00601 0.97167 1.03791 1.20269 0.92800 0.99798 1.07162 1.19981 0.96811 0.94648 0.91155 1.36168 1.27578 1.07215 1.27885 1.00880 0.72422 0.73271 0.71844 1.93560 1.64876 1.59369 1.76447 1.93556 1.86994 1.37782 1.76494 1.58456 1.72545 1.23378 1.29761 1.22262 1.00510 0.85237 0.93324 1.23308 0.96400 1.00760 0.96369 1.19459 0.86319 0.89049 0.84182 1.86148 1.53725 1.67369 1.31941 1.21509 1.02241 1.27254 1.06377 0.91696 1.24965 0.97519 0.93837 0.96545 1.69743 1.39702 1.27022 1.16842 0.86460 0.82925 0.78645 0.79090 1.20384 1.21186 1.19755 1.21919 0.96085 0.89096 0.91875 1.84077 0.92566 1.06315 1.69584 0.91053 0.89822 0.89993 0.83541 0.82865 0.91314 0.92372 0.89354 0.91239 0.77208 0.92317 0.90426 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.38 36.00 0.37 -0.27 16 2 C -0.15 -1.63 6.51 -36.00 -0.23 -1.87 16 3 C -0.17 -1.96 10.05 -41.21 -0.41 -2.38 16 4 C 0.01 0.12 9.84 -41.21 -0.41 -0.29 16 5 C -0.79 -12.25 6.57 29.04 0.19 -12.06 16 6 S 2.73 49.07 6.08 -107.50 -0.65 48.42 16 7 O -0.95 -18.76 17.38 -57.17 -0.99 -19.75 16 8 O -0.96 -18.49 17.23 -57.17 -0.99 -19.47 16 9 N -1.00 -19.21 3.70 -111.42 -0.41 -19.62 16 10 C 0.11 2.10 7.10 -2.53 -0.02 2.08 16 11 C -0.13 -2.79 5.42 -24.58 -0.13 -2.92 16 12 C 0.25 5.91 0.83 -89.93 -0.08 5.84 16 13 O -0.58 -14.09 13.06 -35.23 -0.46 -14.55 16 14 C -0.54 -13.80 8.21 -34.45 -0.28 -14.08 16 15 H 0.06 1.67 7.57 -52.48 -0.40 1.27 16 16 C 0.07 1.89 5.31 -17.82 -0.09 1.79 16 17 N -0.89 -22.73 10.78 55.43 0.60 -22.13 16 18 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.13 2.85 6.34 -3.06 -0.02 2.83 16 23 S 0.21 2.79 23.20 -107.50 -2.49 0.29 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 28 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.07 1.19 7.78 -51.93 -0.40 0.79 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 1.96 7.46 -51.93 -0.39 1.58 16 32 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 33 H 0.38 9.09 7.65 45.56 0.35 9.44 16 34 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.08 1.64 7.65 -51.93 -0.40 1.25 16 36 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 LS Contribution 330.07 15.07 4.97 4.97 Total: -1.00 -29.63 330.07 -10.31 -39.94 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.75 Total: 8.11 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.11 Total: -21.31 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.19 Total: -41.76 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -2.44 Total: -53.78 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 51.86 SS G_CDS: -3.15 Total: 48.71 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.63 -10.31 -39.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.978 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds