Wall clock time and date at job start Tue Mar 31 2020 12:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33394 * 125.20329 * 2 1 4 4 C 1.38424 * 114.92088 * 179.79159 * 3 2 1 5 5 C 1.33384 * 114.92146 * 0.43294 * 4 3 2 6 6 S 1.76205 * 125.20013 * 179.86106 * 5 4 3 7 7 O 1.42093 * 106.40312 * 336.17119 * 6 5 4 8 8 O 1.42107 * 106.39763 * 203.25547 * 6 5 4 9 9 N 1.65597 * 107.21859 * 89.71796 * 6 5 4 10 10 C 1.47422 * 125.65221 * 90.01928 * 9 6 5 11 11 C 1.54909 * 104.83344 * 155.83538 * 10 9 6 12 12 C 1.55161 * 101.58238 * 37.01112 * 11 10 9 13 13 O 1.42904 * 110.71840 * 82.85777 * 12 11 10 14 14 C 1.50694 * 110.72066 * 206.13233 * 12 11 10 15 15 H 1.08005 * 119.99837 * 117.25217 * 14 12 11 16 16 C 1.37871 * 120.00098 * 297.24744 * 14 12 11 17 17 N 1.31513 * 120.00390 * 4.85040 * 16 14 12 18 18 Si 1.86812 * 119.99802 * 184.85340 * 16 14 12 19 19 H 1.48499 * 109.47188 * 84.99712 * 18 16 14 20 20 H 1.48498 * 109.46651 * 205.00139 * 18 16 14 21 21 H 1.48498 * 109.46847 * 324.99925 * 18 16 14 22 22 C 1.47023 * 125.64433 * 269.98064 * 9 6 5 23 23 S 1.75881 * 109.59586 * 359.58993 * 5 4 3 24 24 H 1.08999 * 109.46936 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47262 * 299.99994 * 1 2 3 26 26 H 1.08996 * 109.47201 * 60.00428 * 1 2 3 27 27 H 1.08004 * 122.53493 * 0.02562 * 3 2 1 28 28 H 1.08000 * 122.53640 * 180.27069 * 4 3 2 29 29 H 1.09005 * 110.36530 * 36.99672 * 10 9 6 30 30 H 1.09004 * 110.36923 * 274.67761 * 10 9 6 31 31 H 1.09005 * 111.00423 * 155.08701 * 11 10 9 32 32 H 1.09003 * 111.00386 * 278.93809 * 11 10 9 33 33 H 0.96701 * 113.99576 * 54.59722 * 13 12 11 34 34 H 0.96993 * 119.99960 * 180.02562 * 17 16 14 35 35 H 1.08994 * 109.88706 * 300.50850 * 22 9 6 36 36 H 1.09001 * 109.88581 * 61.52411 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0046 5 6 3.9751 -0.4476 -0.0009 6 16 5.6249 -1.0664 -0.0005 7 8 6.4396 -0.0373 -0.5448 8 8 5.5617 -2.3775 -0.5451 9 7 6.0835 -1.2388 1.5813 10 6 5.9011 -2.4499 2.4018 11 6 6.9873 -2.3510 3.5018 12 6 7.0005 -0.8265 3.7903 13 8 5.9577 -0.4754 4.7021 14 6 8.3432 -0.3962 4.3223 15 1 8.9450 0.3063 3.7648 16 6 8.8032 -0.8991 5.5208 17 7 8.1157 -1.8252 6.1526 18 14 10.4032 -0.2650 6.2472 19 1 10.1369 0.9684 7.0301 20 1 10.9871 -1.3001 7.1375 21 1 11.3575 0.0408 5.1512 22 6 6.7407 -0.2094 2.3999 23 16 2.5210 -1.4372 -0.0006 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8668 2.0895 0.0004 28 1 4.3720 1.6351 0.0094 29 1 6.0537 -3.3441 1.7973 30 1 4.9073 -2.4588 2.8495 31 1 6.6972 -2.9141 4.3890 32 1 7.9545 -2.6862 3.1272 33 1 5.9722 -0.9775 5.5284 34 1 8.4392 -2.1787 6.9959 35 1 7.6856 0.0816 1.9412 36 1 6.0908 0.6607 2.4935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592074174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:30 Heat of formation + Delta-G solvation = -110.513640 kcal Electronic energy + Delta-G solvation = -22689.827329 eV Core-core repulsion = 19198.812916 eV Total energy + Delta-G solvation = -3491.014412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.80995 -39.09620 -38.37381 -37.10718 -36.07580 -34.17470 -33.13845 -30.85895 -30.04269 -28.07686 -26.70313 -24.34501 -23.24948 -21.71095 -21.30674 -19.84917 -19.21636 -18.75739 -18.52229 -17.32223 -16.87104 -16.84255 -16.15701 -16.04232 -15.53448 -15.14130 -14.90811 -14.64058 -14.14855 -14.00333 -13.74941 -13.68505 -13.45188 -13.35263 -13.31067 -13.29137 -13.11894 -13.07288 -12.81679 -12.65670 -12.35658 -12.23331 -12.17572 -11.93389 -11.87395 -11.17435 -10.60858 -10.16250 -10.07700 -9.95116 -9.63127 -8.19739 -6.32860 -0.87301 -0.51249 0.34007 0.72400 1.41401 1.44366 1.47125 1.54917 1.93080 2.42299 2.59459 3.03935 3.21048 3.72098 3.75155 4.04886 4.17973 4.23459 4.34137 4.42845 4.53478 4.60413 4.66366 4.70642 4.82226 4.94767 4.99002 5.06317 5.15388 5.21732 5.30950 5.35655 5.53416 5.57920 5.81289 6.15785 6.70324 7.36639 7.42549 8.86065 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.022640 B = 0.004045 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.464914 B = 6920.588681 C = 7232.049618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.123 4.123 3 C -0.182 4.182 4 C 0.012 3.988 5 C -0.820 4.820 6 S 2.743 3.257 7 O -0.976 6.976 8 O -0.976 6.976 9 N -1.006 6.006 10 C 0.116 3.884 11 C -0.122 4.122 12 C 0.238 3.762 13 O -0.587 6.587 14 C -0.562 4.562 15 H 0.056 0.944 16 C 0.038 3.962 17 N -0.905 5.905 18 Si 0.956 3.044 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.274 1.274 22 C 0.139 3.861 23 S 0.191 5.809 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.180 0.820 28 H 0.159 0.841 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.376 0.624 34 H 0.269 0.731 35 H 0.070 0.930 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.282 2.142 -9.466 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.243 4.243 3 C -0.211 4.211 4 C -0.023 4.023 5 C -1.024 5.024 6 S 2.835 3.165 7 O -0.967 6.967 8 O -0.966 6.966 9 N -0.845 5.845 10 C -0.008 4.008 11 C -0.162 4.162 12 C 0.197 3.803 13 O -0.395 6.395 14 C -0.601 4.601 15 H 0.074 0.926 16 C -0.164 4.164 17 N -0.544 5.544 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.206 1.206 21 H -0.199 1.199 22 C 0.015 3.985 23 S 0.456 5.544 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.197 0.803 28 H 0.177 0.823 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.225 0.775 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.239 0.665 -10.628 18.591 hybrid contribution 1.068 1.561 1.326 2.310 sum -14.170 2.226 -9.302 17.096 Atomic orbital electron populations 1.20680 0.84219 1.04715 1.05356 1.25690 1.02328 0.95519 1.00759 1.20573 0.91637 1.01561 1.07359 1.20342 0.98427 0.94138 0.89424 1.35581 1.26481 1.08395 1.31910 1.00064 0.72931 0.72565 0.70951 1.93522 1.66617 1.59834 1.76718 1.93523 1.87684 1.38848 1.76581 1.58411 1.73342 1.22936 1.29811 1.22226 1.00078 0.85798 0.92727 1.23116 0.96681 0.99419 0.96993 1.19582 0.85463 0.90329 0.84890 1.86132 1.53843 1.67545 1.31979 1.21783 1.03486 1.27693 1.07113 0.92562 1.25566 1.00061 0.93990 0.96771 1.69808 1.40513 1.27144 1.16894 0.85616 0.79854 0.78130 0.78244 1.20246 1.20648 1.19882 1.21709 0.96210 0.89665 0.90965 1.84106 0.92330 1.07745 1.70195 0.90137 0.88075 0.87701 0.80293 0.82304 0.89825 0.91002 0.90215 0.92682 0.77491 0.92139 0.91156 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 10.38 71.23 0.74 -0.20 16 2 C -0.12 -2.33 6.51 24.59 0.16 -2.17 16 3 C -0.18 -3.63 10.05 21.22 0.21 -3.42 16 4 C 0.01 0.32 9.84 21.22 0.21 0.53 16 5 C -0.82 -24.75 6.57 66.72 0.44 -24.32 16 6 S 2.74 98.91 6.08 -56.49 -0.34 98.56 16 7 O -0.98 -38.91 17.38 -128.00 -2.23 -41.13 16 8 O -0.98 -37.77 17.23 -128.00 -2.21 -39.97 16 9 N -1.01 -38.73 3.70 -506.41 -1.87 -40.60 16 10 C 0.12 4.36 7.10 86.86 0.62 4.97 16 11 C -0.12 -5.38 5.42 31.99 0.17 -5.20 16 12 C 0.24 11.37 0.83 -10.35 -0.01 11.36 16 13 O -0.59 -28.51 13.06 -148.98 -1.95 -30.46 16 14 C -0.56 -29.43 8.21 25.60 0.21 -29.22 16 15 H 0.06 2.95 7.57 -2.91 -0.02 2.93 16 16 C 0.04 1.93 5.31 84.65 0.45 2.38 16 17 N -0.90 -46.13 10.78 21.44 0.23 -45.90 16 18 Si 0.96 41.33 29.54 68.60 2.03 43.35 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C 0.14 5.99 6.34 86.73 0.55 6.53 16 23 S 0.19 4.80 23.20 -56.49 -1.31 3.49 16 24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.08 2.87 7.78 -2.38 -0.02 2.85 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.08 3.60 7.46 -2.38 -0.02 3.58 16 32 H 0.05 2.53 8.04 -2.39 -0.02 2.51 16 33 H 0.38 18.27 7.65 -74.06 -0.57 17.70 16 34 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 35 H 0.07 3.07 7.65 -2.39 -0.02 3.05 16 36 H 0.06 2.60 8.07 -2.39 -0.02 2.58 16 Total: -1.00 -63.11 330.07 -3.35 -66.46 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.54 Total: 24.95 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 3.75 Total: -38.76 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -1.64 Total: -86.50 kcal Atomic # 8 Polarization: -105.18 SS G_CDS: -6.38 Total: -111.56 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 103.71 SS G_CDS: -1.65 Total: 102.05 kcal Total: -63.11 -3.35 -66.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.051 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds