Wall clock time and date at job start Tue Mar 31 2020 11:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34766 * 120.00298 * 2 1 4 4 O 1.21690 * 120.00051 * 179.97438 * 3 2 1 5 5 C 1.46375 * 119.99998 * 359.97438 * 3 2 1 6 6 H 1.08002 * 119.99766 * 359.97438 * 5 3 2 7 7 C 1.40057 * 120.00152 * 179.97438 * 5 3 2 8 8 N 1.30671 * 119.99510 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00131 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46829 * 60.00062 * 9 7 5 11 11 H 1.48496 * 109.47046 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47267 * 300.00376 * 9 7 5 13 13 C 1.46506 * 119.99777 * 179.97438 * 2 1 3 14 14 H 1.08990 * 109.47128 * 174.12716 * 13 2 1 15 15 C 1.52992 * 109.47256 * 294.13218 * 13 2 1 16 16 O 1.42907 * 109.47597 * 64.99618 * 15 13 2 17 17 C 1.50703 * 109.46913 * 54.12777 * 13 2 1 18 18 C 1.38247 * 120.00356 * 228.44913 * 17 13 2 19 19 C 1.38216 * 120.03974 * 179.77431 * 18 17 13 20 20 C 1.38248 * 120.03833 * 0.50114 * 19 18 17 21 21 C 1.38298 * 120.00014 * 359.75049 * 20 19 18 22 22 Cl 1.73603 * 120.02039 * 179.97438 * 21 20 19 23 23 C 1.38303 * 119.99863 * 48.72620 * 17 13 2 24 24 Cl 1.73603 * 120.02037 * 359.97438 * 23 17 13 25 25 H 1.08997 * 109.47586 * 275.31898 * 1 2 3 26 26 H 1.09007 * 109.47176 * 35.31771 * 1 2 3 27 27 H 1.08999 * 109.47268 * 155.31559 * 1 2 3 28 28 H 0.97003 * 119.99491 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47398 * 184.99944 * 15 13 2 30 30 H 1.09001 * 109.47005 * 304.99684 * 15 13 2 31 31 H 0.96700 * 114.00272 * 179.97438 * 16 15 13 32 32 H 1.08006 * 119.97685 * 0.02562 * 18 17 13 33 33 H 1.08002 * 119.98430 * 180.22901 * 19 18 17 34 34 H 1.08002 * 120.00037 * 179.72447 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3558 1.1670 0.0005 5 6 1.4071 2.4348 -0.0006 6 1 0.3270 2.4348 -0.0014 7 6 2.1074 3.6477 0.0000 8 7 3.4141 3.6475 0.0005 9 14 1.1735 5.2654 -0.0015 10 1 0.3184 5.3443 1.2100 11 1 2.1385 6.3941 -0.0012 12 1 0.3211 5.3439 -1.2149 13 6 2.1975 -1.2688 0.0006 14 1 3.2643 -1.0724 -0.1047 15 6 1.9417 -2.0047 1.3173 16 8 0.5614 -2.3650 1.4014 17 6 1.7275 -2.1206 -1.1504 18 6 1.3918 -3.4448 -0.9385 19 6 0.9563 -4.2255 -1.9927 20 6 0.8657 -3.6858 -3.2622 21 6 1.2061 -2.3627 -3.4771 22 17 1.0932 -1.6846 -5.0712 23 6 1.6375 -1.5791 -2.4198 24 17 2.0652 0.0820 -2.6878 25 1 -0.3634 0.0953 1.0232 26 1 -0.3634 0.8386 -0.5941 27 1 -0.3634 -0.9337 -0.4292 28 1 3.8991 4.4876 0.0005 29 1 2.5551 -2.9049 1.3555 30 1 2.1990 -1.3541 2.1531 31 1 0.3266 -2.8365 2.2124 32 1 1.4661 -3.8685 0.0522 33 1 0.6907 -5.2589 -1.8254 34 1 0.5296 -4.2975 -4.0864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598190865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:39 Heat of formation + Delta-G solvation = -80.688673 kcal Electronic energy + Delta-G solvation = -22916.457028 eV Core-core repulsion = 19286.815416 eV Total energy + Delta-G solvation = -3629.641612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06784 -39.33959 -37.89696 -37.33654 -37.16643 -35.54502 -34.50488 -32.84497 -31.47611 -29.69139 -28.06918 -26.83388 -24.80748 -23.48150 -22.45364 -20.57943 -18.76917 -18.31538 -18.02189 -17.42500 -17.01610 -16.61016 -16.22861 -15.96737 -15.62600 -15.08728 -14.94766 -14.58577 -14.26061 -14.04921 -13.50222 -13.32972 -13.19036 -13.02642 -12.79667 -12.70704 -12.65114 -12.51663 -12.24824 -12.16298 -12.14088 -12.01198 -11.82383 -11.48809 -10.87079 -10.86118 -9.85090 -9.60073 -9.54092 -8.91733 -8.22319 -6.74757 0.08258 0.15258 0.96587 1.37050 1.39553 1.47609 1.49912 2.23862 2.51514 2.55426 2.99815 3.42823 3.53052 3.76865 4.01223 4.12525 4.23078 4.33316 4.42852 4.50452 4.54226 4.71032 4.84033 4.87775 5.01078 5.10652 5.16992 5.34254 5.39589 5.40643 5.76272 5.86543 6.19929 6.51671 6.95435 7.04610 7.53856 8.57367 8.77293 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.005899 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.458664 B = 4745.633339 C = 5908.263436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.131 3.869 2 N -0.627 5.627 3 C 0.563 3.437 4 O -0.622 6.622 5 C -0.564 4.564 6 H 0.079 0.921 7 C 0.035 3.965 8 N -0.818 5.818 9 Si 0.979 3.021 10 H -0.254 1.254 11 H -0.275 1.275 12 H -0.261 1.261 13 C 0.180 3.820 14 H 0.079 0.921 15 C 0.085 3.915 16 O -0.565 6.565 17 C -0.078 4.078 18 C -0.076 4.076 19 C -0.097 4.097 20 C -0.100 4.100 21 C -0.053 4.053 22 Cl -0.066 7.066 23 C -0.050 4.050 24 Cl -0.055 7.055 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.270 0.730 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.393 0.607 32 H 0.165 0.835 33 H 0.179 0.821 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.098 -17.776 -1.903 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.362 5.362 3 C 0.369 3.631 4 O -0.508 6.508 5 C -0.600 4.600 6 H 0.097 0.903 7 C -0.180 4.180 8 N -0.448 5.448 9 Si 0.800 3.200 10 H -0.178 1.178 11 H -0.199 1.199 12 H -0.186 1.186 13 C 0.075 3.925 14 H 0.097 0.903 15 C 0.006 3.994 16 O -0.373 6.373 17 C -0.081 4.081 18 C -0.094 4.094 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.080 4.080 22 Cl -0.037 7.037 23 C -0.078 4.078 24 Cl -0.026 7.026 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.243 0.757 32 H 0.182 0.818 33 H 0.197 0.803 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.275 -17.160 -2.640 18.824 hybrid contribution 0.057 1.296 0.199 1.313 sum -7.217 -15.864 -2.441 17.598 Atomic orbital electron populations 1.21121 0.80198 1.00206 0.99694 1.47613 1.06126 1.03754 1.78694 1.18178 0.86337 0.83493 0.75077 1.90536 1.15887 1.87132 1.57285 1.21369 0.94280 0.90232 1.54161 0.90322 1.26770 0.95378 1.04243 0.91599 1.70175 1.09057 1.28403 1.37159 0.85342 0.78536 0.76083 0.80078 1.17762 1.19927 1.18570 1.19717 0.96867 0.83889 0.92037 0.90328 1.22278 0.84047 0.97928 0.95171 1.86569 1.24685 1.79772 1.46279 1.20108 1.00141 0.95973 0.91836 1.21520 0.95721 0.90764 1.01421 1.21619 0.97559 1.01818 0.90490 1.21377 0.99297 0.91226 0.99963 1.20997 1.06320 0.95198 0.85525 1.98360 1.96752 1.85761 1.22857 1.21101 1.04407 0.87484 0.94809 1.98487 1.91144 1.16381 1.96592 0.94326 0.94153 0.91959 0.91988 0.89835 0.94846 0.75701 0.81776 0.80347 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.21 8.20 127.77 1.05 6.26 16 2 N -0.63 -28.36 1.42 -831.92 -1.18 -29.54 16 3 C 0.56 32.08 5.49 86.36 0.47 32.56 16 4 O -0.62 -40.48 14.30 -4.32 -0.06 -40.54 16 5 C -0.56 -32.40 8.73 24.83 0.22 -32.18 16 6 H 0.08 4.21 6.11 -2.91 -0.02 4.19 16 7 C 0.04 2.00 5.50 85.31 0.47 2.47 16 8 N -0.82 -50.60 11.83 21.84 0.26 -50.35 16 9 Si 0.98 42.60 29.56 68.60 2.03 44.63 16 10 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.18 6.84 2.48 44.24 0.11 6.95 16 14 H 0.08 3.60 6.92 -2.39 -0.02 3.59 16 15 C 0.08 2.33 6.02 71.98 0.43 2.76 16 16 O -0.57 -12.55 9.65 -148.98 -1.44 -13.99 16 17 C -0.08 -2.53 4.06 -19.85 -0.08 -2.61 16 18 C -0.08 -1.68 8.40 22.27 0.19 -1.50 16 19 C -0.10 -1.68 10.04 22.27 0.22 -1.45 16 20 C -0.10 -2.09 9.83 22.29 0.22 -1.87 16 21 C -0.05 -1.57 6.32 22.34 0.14 -1.43 16 22 Cl -0.07 -1.95 27.96 -2.72 -0.08 -2.02 16 23 C -0.05 -1.80 6.11 22.35 0.14 -1.67 16 24 Cl -0.06 -2.51 23.68 -2.72 -0.06 -2.58 16 25 H 0.04 1.46 8.11 -2.39 -0.02 1.44 16 26 H 0.04 1.71 6.41 -2.38 -0.02 1.70 16 27 H 0.06 2.23 6.60 -2.39 -0.02 2.21 16 28 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 29 H 0.08 1.67 7.32 -2.39 -0.02 1.65 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.39 4.61 9.12 -74.06 -0.68 3.94 16 32 H 0.16 2.74 5.50 -2.91 -0.02 2.73 16 33 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -79.43 309.55 3.53 -75.89 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.49 Total: 10.21 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 3.58 Total: 8.29 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -0.92 Total: -79.89 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -1.50 Total: -54.53 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 17 Polarization: -4.46 SS G_CDS: -0.14 Total: -4.60 kcal Total: -79.43 3.53 -75.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598190865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.797 kcal (2) G-P(sol) polarization free energy of solvation -79.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds