Wall clock time and date at job start Tue Mar 31 2020 11:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86798 * 120.00311 * 2 1 4 4 H 1.48492 * 109.47510 * 239.99912 * 3 2 1 5 5 H 1.48506 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47209 * 119.99562 * 3 2 1 7 7 C 1.40050 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99893 * 180.02562 * 7 2 1 9 9 C 1.46377 * 119.99752 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00150 * 0.02562 * 9 7 2 11 11 N 1.34785 * 119.99867 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99683 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.47171 * 34.99947 * 12 11 9 14 14 C 1.53005 * 109.46900 * 274.99617 * 12 11 9 15 15 C 1.52999 * 109.46649 * 65.00728 * 14 12 11 16 16 O 1.42907 * 109.46668 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.46756 * 154.99771 * 12 11 9 18 18 C 1.38215 * 119.98693 * 219.99343 * 17 12 11 19 19 C 1.38363 * 120.01322 * 179.70262 * 18 17 12 20 20 Cl 1.73599 * 120.00875 * 180.25611 * 19 18 17 21 21 C 1.38335 * 119.98688 * 0.28162 * 19 18 17 22 22 C 1.38333 * 119.97332 * 0.02562 * 21 19 18 23 23 Cl 1.73591 * 120.00595 * 179.97438 * 22 21 19 24 24 C 1.38230 * 119.98695 * 40.25541 * 17 12 11 25 25 H 0.96996 * 120.00044 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99726 * 0.02562 * 11 9 7 27 27 H 1.09003 * 109.46609 * 185.00265 * 14 12 11 28 28 H 1.08995 * 109.47471 * 305.00440 * 14 12 11 29 29 H 1.09003 * 109.47237 * 299.99152 * 15 14 12 30 30 H 1.08995 * 109.47420 * 59.99680 * 15 14 12 31 31 H 0.96700 * 113.99820 * 179.97438 * 16 15 14 32 32 H 1.08002 * 119.99636 * 359.97438 * 18 17 12 33 33 H 1.07994 * 120.01618 * 179.97438 * 21 19 18 34 34 H 1.08000 * 119.99001 * 359.97438 * 24 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0946 1.6964 -1.2124 5 1 1.2758 2.7465 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6478 -0.0005 12 6 1.2164 -4.9164 -0.0011 13 1 0.3059 -4.8100 -0.5909 14 6 0.8520 -5.2956 1.4358 15 6 -0.1254 -4.2641 2.0030 16 8 -0.4662 -4.6185 3.3448 17 6 2.0806 -5.9952 -0.6015 18 6 1.5230 -6.9372 -1.4454 19 6 2.3171 -7.9242 -2.0018 20 17 1.6180 -9.1034 -3.0669 21 6 3.6683 -7.9715 -1.7089 22 6 4.2245 -7.0322 -0.8592 23 17 5.9198 -7.0912 -0.4905 24 6 3.4295 -6.0454 -0.3039 25 1 -0.4850 0.8400 0.0004 26 1 2.9190 -3.6478 -0.0002 27 1 0.3860 -6.2809 1.4444 28 1 1.7546 -5.3151 2.0464 29 1 0.3407 -3.2788 1.9943 30 1 -1.0280 -4.2446 1.3923 31 1 -1.0837 -4.0068 3.7684 32 1 0.4681 -6.9004 -1.6739 33 1 4.2885 -8.7419 -2.1426 34 1 3.8638 -5.3112 0.3586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600746977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:05 Heat of formation + Delta-G solvation = -108.036672 kcal Electronic energy + Delta-G solvation = -21675.078802 eV Core-core repulsion = 18044.251292 eV Total energy + Delta-G solvation = -3630.827510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11503 -39.53262 -37.78666 -37.74696 -37.41958 -35.89087 -34.49912 -32.48247 -31.66992 -31.41634 -28.42375 -26.48466 -24.02008 -23.27552 -22.52669 -21.05451 -19.51441 -18.39761 -18.03379 -17.56396 -17.07831 -16.79029 -16.40542 -15.95715 -15.58730 -15.34965 -15.07836 -15.04102 -14.54213 -14.34988 -13.79536 -13.49205 -13.36730 -13.15914 -12.95024 -12.90959 -12.72424 -12.55982 -12.40099 -12.18299 -12.06203 -11.98681 -11.94471 -11.72087 -10.91978 -10.79744 -10.01479 -9.81333 -9.72864 -9.47678 -8.25782 -6.80578 -0.10603 -0.06824 0.74264 1.20783 1.42218 1.43663 1.54632 2.23820 2.30290 2.51762 3.01503 3.19100 3.55970 3.72857 3.87339 3.88711 4.02818 4.12055 4.21534 4.24416 4.42743 4.55955 4.65537 4.85432 4.90602 4.98878 5.06490 5.17480 5.27443 5.35520 5.40832 5.91562 6.20257 6.28477 6.79592 6.91717 7.53668 8.52255 8.70103 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012425 B = 0.003879 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.062673 B = 7216.136480 C = 7907.279492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.548 3.452 10 O -0.611 6.611 11 N -0.749 5.749 12 C 0.202 3.798 13 H 0.070 0.930 14 C -0.110 4.110 15 C 0.092 3.908 16 O -0.591 6.591 17 C -0.058 4.058 18 C -0.099 4.099 19 C -0.022 4.022 20 Cl -0.050 7.050 21 C -0.100 4.100 22 C -0.022 4.022 23 Cl -0.050 7.050 24 C -0.099 4.099 25 H 0.273 0.727 26 H 0.392 0.608 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.391 0.609 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.993 -14.770 -1.949 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.178 4.178 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.611 4.611 8 H 0.100 0.900 9 C 0.352 3.648 10 O -0.497 6.497 11 N -0.405 5.405 12 C 0.096 3.904 13 H 0.088 0.912 14 C -0.149 4.149 15 C 0.015 3.985 16 O -0.399 6.399 17 C -0.060 4.060 18 C -0.118 4.118 19 C -0.049 4.049 20 Cl -0.021 7.021 21 C -0.119 4.119 22 C -0.049 4.049 23 Cl -0.021 7.021 24 C -0.118 4.118 25 H 0.083 0.917 26 H 0.227 0.773 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.239 0.761 32 H 0.164 0.836 33 H 0.181 0.819 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.433 -15.288 -2.150 17.135 hybrid contribution 0.140 1.289 0.034 1.297 sum 7.573 -13.999 -2.116 16.056 Atomic orbital electron populations 1.70136 1.09065 1.28760 1.36463 1.26742 0.95423 1.04280 0.91376 0.85234 0.78385 0.75685 0.80057 1.18227 1.20089 1.18161 1.21365 0.94592 0.90314 1.54826 0.90044 1.18329 0.86980 0.83649 0.75823 1.90568 1.15350 1.87516 1.56281 1.46023 1.09108 1.04041 1.81295 1.19303 0.94092 0.82372 0.94667 0.91177 1.21845 0.99194 0.98630 0.95207 1.22099 0.97280 0.97464 0.81684 1.86279 1.69030 1.56050 1.28544 1.19690 0.93720 0.95708 0.96840 1.21125 1.01347 0.93255 0.96097 1.20666 0.93160 0.93859 0.97242 1.98386 1.84130 1.56160 1.63441 1.21072 0.93440 0.99525 0.97896 1.20679 0.86370 0.97756 1.00079 1.98389 1.12136 1.98044 1.93524 1.21043 0.92690 0.98060 0.99989 0.91718 0.77316 0.89822 0.91078 0.94976 0.95061 0.76081 0.83561 0.81886 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.25 11.83 21.84 0.26 -46.99 16 2 C 0.04 2.00 5.50 85.30 0.47 2.47 16 3 Si 0.99 39.65 29.56 68.60 2.03 41.68 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 5 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.57 -30.78 9.54 24.83 0.24 -30.54 16 8 H 0.08 3.96 7.85 -2.91 -0.02 3.94 16 9 C 0.55 28.97 6.31 86.36 0.55 29.51 16 10 O -0.61 -36.42 12.15 -4.31 -0.05 -36.48 16 11 N -0.75 -30.62 4.97 -450.37 -2.24 -32.86 16 12 C 0.20 7.05 2.46 44.25 0.11 7.16 16 13 H 0.07 2.79 7.44 -2.39 -0.02 2.78 16 14 C -0.11 -3.75 5.24 30.60 0.16 -3.59 16 15 C 0.09 3.74 5.65 71.98 0.41 4.15 16 16 O -0.59 -21.18 13.66 -148.98 -2.04 -23.21 16 17 C -0.06 -1.61 4.95 -19.87 -0.10 -1.70 16 18 C -0.10 -2.43 9.45 22.29 0.21 -2.22 16 19 C -0.02 -0.48 6.32 22.32 0.14 -0.34 16 20 Cl -0.05 -0.97 28.96 -2.72 -0.08 -1.04 16 21 C -0.10 -1.98 9.62 22.32 0.21 -1.76 16 22 C -0.02 -0.47 6.32 22.32 0.14 -0.33 16 23 Cl -0.05 -0.98 28.96 -2.72 -0.08 -1.06 16 24 C -0.10 -2.45 8.83 22.30 0.20 -2.25 16 25 H 0.27 14.52 8.29 -92.71 -0.77 13.75 16 26 H 0.39 14.12 6.86 -92.71 -0.64 13.49 16 27 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 1.57 5.64 -2.39 -0.01 1.55 16 30 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 31 H 0.39 11.03 9.12 -74.06 -0.68 10.35 16 32 H 0.15 3.38 8.04 -2.91 -0.02 3.35 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.14 3.45 6.93 -2.91 -0.02 3.43 16 Total: -1.00 -66.93 323.94 0.40 -66.53 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.14 Total: 32.88 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 2.73 Total: 0.56 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -1.98 Total: -79.86 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -2.09 Total: -59.69 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.16 Total: -2.11 kcal Total: -66.93 0.40 -66.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600746977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.507 kcal (2) G-P(sol) polarization free energy of solvation -66.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds