Wall clock time and date at job start Tue Mar 31 2020 11:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 119.99939 * 2 1 4 4 H 1.48502 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47556 * 300.00412 * 3 2 1 6 6 H 1.48502 * 109.46687 * 60.00571 * 3 2 1 7 7 C 1.40048 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99487 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99899 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00251 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99989 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00452 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.46977 * 325.00099 * 12 11 9 14 14 C 1.52998 * 109.47118 * 84.99435 * 12 11 9 15 15 C 1.53008 * 109.47358 * 295.00261 * 14 12 11 16 16 O 1.42896 * 109.47233 * 180.02562 * 15 14 12 17 17 C 1.50691 * 109.47438 * 204.99635 * 12 11 9 18 18 C 1.38220 * 119.98849 * 140.00104 * 17 12 11 19 19 C 1.38358 * 120.01552 * 180.02562 * 18 17 12 20 20 Cl 1.73603 * 120.00991 * 179.97438 * 19 18 17 21 21 C 1.38335 * 119.98725 * 359.97438 * 19 18 17 22 22 C 1.38332 * 119.96971 * 359.97438 * 21 19 18 23 23 Cl 1.73607 * 120.00270 * 179.97438 * 22 21 19 24 24 C 1.38224 * 119.98574 * 320.01678 * 17 12 11 25 25 H 0.97000 * 119.99851 * 0.02562 * 1 2 3 26 26 H 0.97007 * 119.99486 * 359.97438 * 11 9 7 27 27 H 1.08998 * 109.47631 * 54.99975 * 14 12 11 28 28 H 1.09004 * 109.47519 * 175.00723 * 14 12 11 29 29 H 1.09005 * 109.47158 * 300.00352 * 15 14 12 30 30 H 1.09000 * 109.46812 * 59.99485 * 15 14 12 31 31 H 0.96700 * 113.99678 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.99585 * 359.97438 * 18 17 12 33 33 H 1.07996 * 120.01280 * 179.72511 * 21 19 18 34 34 H 1.07992 * 119.99407 * 359.97438 * 24 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8820 2.3966 -1.2124 6 1 1.8820 2.3963 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0582 -2.4805 -0.0017 11 7 1.9489 -3.6477 -0.0017 12 6 1.2165 -4.9164 -0.0022 13 1 0.3056 -4.8103 0.5869 14 6 0.8531 -5.2949 -1.4394 15 6 -0.1239 -4.2632 -2.0071 16 8 -0.4638 -4.6170 -3.3492 17 6 2.0803 -5.9954 0.5982 18 6 1.5222 -6.9379 1.4412 19 6 2.3149 -7.9285 1.9932 20 17 1.6139 -9.1118 3.0526 21 6 3.6661 -7.9759 1.7009 22 6 4.2239 -7.0330 0.8562 23 17 5.9197 -7.0912 0.4893 24 6 3.4305 -6.0420 0.3059 25 1 -0.4850 0.8401 -0.0004 26 1 2.9190 -3.6476 -0.0013 27 1 1.7561 -5.3141 -2.0496 28 1 0.3871 -6.2802 -1.4490 29 1 -1.0270 -4.2439 -1.3969 30 1 0.3421 -3.2778 -1.9975 31 1 -1.0811 -4.0050 -3.7729 32 1 0.4673 -6.9007 1.6698 33 1 4.2861 -8.7463 2.1350 34 1 3.8659 -5.3054 -0.3530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600746980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:08 Heat of formation + Delta-G solvation = -87.125407 kcal Electronic energy + Delta-G solvation = -21674.340723 eV Core-core repulsion = 18044.419993 eV Total energy + Delta-G solvation = -3629.920730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95817 -37.96987 -36.88532 -36.43327 -36.11164 -34.37643 -32.52187 -31.05987 -30.57072 -30.10440 -26.54229 -25.02482 -22.99392 -22.02524 -20.91932 -19.41972 -17.98995 -16.88073 -16.68719 -16.12129 -15.76070 -15.35727 -15.05029 -14.47947 -14.37868 -14.12050 -13.72290 -13.51916 -12.99823 -12.77057 -12.48296 -12.38779 -11.96571 -11.84935 -11.77203 -11.41356 -11.11928 -11.11478 -11.08299 -11.02709 -10.77554 -10.56957 -10.37240 -10.20410 -9.24615 -8.98955 -8.90675 -8.84964 -7.76298 -7.68928 -6.29698 -4.74868 0.87501 0.93393 1.66634 2.13422 3.07149 3.16553 3.20230 3.30255 4.02339 4.34938 4.46564 4.65526 4.77476 4.86505 4.90995 5.10452 5.25953 5.38898 5.59125 5.62911 5.84308 5.85433 5.93191 5.96743 6.14727 6.29465 6.36562 6.43997 6.67100 6.78353 7.34221 7.75135 7.92052 8.15242 8.20881 8.92907 9.35366 10.46344 10.64203 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.003879 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.631671 B = 7216.296499 C = 7910.496107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.090 3.910 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.575 6.575 11 N -0.761 5.761 12 C 0.195 3.805 13 H 0.094 0.906 14 C -0.118 4.118 15 C 0.080 3.920 16 O -0.592 6.592 17 C -0.047 4.047 18 C -0.097 4.097 19 C -0.021 4.021 20 Cl -0.063 7.063 21 C -0.111 4.111 22 C -0.020 4.020 23 Cl -0.062 7.062 24 C -0.096 4.096 25 H 0.268 0.732 26 H 0.381 0.619 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.375 0.625 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 -13.795 1.660 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.458 6.458 11 N -0.417 5.417 12 C 0.088 3.912 13 H 0.112 0.888 14 C -0.157 4.157 15 C 0.003 3.997 16 O -0.397 6.397 17 C -0.048 4.048 18 C -0.116 4.116 19 C -0.048 4.048 20 Cl -0.034 7.034 21 C -0.131 4.131 22 C -0.047 4.047 23 Cl -0.033 7.033 24 C -0.115 4.115 25 H 0.079 0.921 26 H 0.214 0.786 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.221 0.779 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.504 -14.278 1.869 15.416 hybrid contribution 0.710 1.119 0.056 1.326 sum 6.214 -13.159 1.924 14.679 Atomic orbital electron populations 1.70007 1.06983 1.27285 1.35121 1.25671 0.94621 1.00249 0.92514 0.86340 0.80584 0.81763 0.78265 1.18748 1.20136 1.20149 1.20908 0.93702 0.89256 1.54153 0.91379 1.18181 0.87297 0.82189 0.76218 1.90604 1.13795 1.86575 1.54814 1.46372 1.08592 1.04087 1.82635 1.19376 0.94596 0.82702 0.94518 0.88844 1.21907 0.99602 0.98628 0.95566 1.22386 0.97798 0.98500 0.80975 1.86306 1.68480 1.55523 1.29404 1.20080 0.93582 0.95832 0.95312 1.21073 1.00851 0.93247 0.96436 1.20655 0.92980 0.93839 0.97347 1.98378 1.84152 1.56551 1.64332 1.20810 0.93511 0.99710 0.99022 1.20679 0.85842 0.97923 1.00291 1.98382 1.13152 1.98110 1.93620 1.21043 0.93068 0.97560 0.99828 0.92103 0.78613 0.91668 0.91870 0.93271 0.90998 0.77886 0.84016 0.84094 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.53 11.83 55.55 0.66 -20.87 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.26 16 3 Si 0.91 19.31 29.56 -169.99 -5.02 14.29 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.54 -14.34 9.54 -35.63 -0.34 -14.68 16 8 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 9 C 0.56 14.24 6.31 -12.99 -0.08 14.16 16 10 O -0.57 -16.36 12.15 5.20 0.06 -16.29 16 11 N -0.76 -15.27 4.97 -56.35 -0.28 -15.55 16 12 C 0.19 3.36 2.46 -69.09 -0.17 3.19 16 13 H 0.09 1.79 7.44 -51.93 -0.39 1.40 16 14 C -0.12 -2.02 5.24 -26.73 -0.14 -2.16 16 15 C 0.08 1.58 5.65 37.16 0.21 1.79 16 16 O -0.59 -10.61 13.66 -35.23 -0.48 -11.10 16 17 C -0.05 -0.66 4.95 -104.64 -0.52 -1.18 16 18 C -0.10 -1.25 9.45 -39.54 -0.37 -1.62 16 19 C -0.02 -0.25 6.32 -39.50 -0.25 -0.50 16 20 Cl -0.06 -0.67 28.96 -51.86 -1.50 -2.18 16 21 C -0.11 -1.25 9.62 -39.51 -0.38 -1.63 16 22 C -0.02 -0.24 6.32 -39.50 -0.25 -0.49 16 23 Cl -0.06 -0.68 28.96 -51.86 -1.50 -2.18 16 24 C -0.10 -1.26 8.84 -39.54 -0.35 -1.61 16 25 H 0.27 6.89 8.29 -40.82 -0.34 6.55 16 26 H 0.38 6.87 6.85 -40.82 -0.28 6.59 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 30 H 0.07 1.68 5.64 -51.93 -0.29 1.38 16 31 H 0.38 5.28 9.12 45.56 0.42 5.69 16 32 H 0.14 1.68 8.04 -52.49 -0.42 1.26 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.14 1.81 6.91 -52.49 -0.36 1.44 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -30.53 323.92 -8.47 -39.01 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -2.55 Total: 12.46 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.74 Total: -2.47 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.38 Total: -36.42 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.42 Total: -27.39 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -3.00 Total: -4.36 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.53 -8.47 -39.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600746980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.118 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds