Wall clock time and date at job start Tue Mar 31 2020 12:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86804 * 120.00076 * 2 1 4 4 H 1.48501 * 109.46828 * 239.99953 * 3 2 1 5 5 H 1.48500 * 109.46758 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47000 * 119.99960 * 3 2 1 7 7 C 1.38653 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99961 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.35756 * 117.00108 * 185.07167 * 9 7 2 11 11 C 1.39044 * 119.98369 * 354.27239 * 10 9 7 12 12 C 1.38240 * 120.27433 * 180.02562 * 11 10 9 13 13 C 1.37976 * 120.24377 * 359.97438 * 12 11 10 14 14 C 1.39849 * 119.96756 * 0.02562 * 13 12 11 15 15 C 1.47243 * 120.13606 * 180.02562 * 14 13 12 16 16 C 1.34746 * 119.99988 * 137.20200 * 15 14 13 17 17 C 1.46473 * 119.99740 * 349.74121 * 16 15 14 18 18 N 1.31021 * 125.28427 * 353.29546 * 17 16 15 19 19 C 1.30241 * 117.33096 * 180.02562 * 18 17 16 20 20 C 1.36990 * 115.29828 * 0.02562 * 19 18 17 21 21 C 1.46312 * 126.00584 * 180.02562 * 20 19 18 22 22 O 1.21647 * 120.00209 * 359.97438 * 21 20 19 23 23 O 1.34919 * 120.00308 * 179.97438 * 21 20 19 24 24 S 1.76116 * 125.28175 * 173.32365 * 17 16 15 25 25 C 1.38530 * 119.98725 * 174.55112 * 10 9 7 26 26 H 0.96998 * 120.00262 * 359.97438 * 1 2 3 27 27 H 1.08006 * 119.86688 * 0.02598 * 11 10 9 28 28 H 1.08004 * 119.87831 * 179.97438 * 12 11 10 29 29 H 1.07999 * 120.01997 * 179.97438 * 13 12 11 30 30 H 1.07999 * 120.00099 * 317.19460 * 15 14 13 31 31 H 1.07999 * 120.00153 * 169.74157 * 16 15 14 32 32 H 1.08000 * 122.35133 * 180.02562 * 19 18 17 33 33 H 0.96705 * 114.00136 * 179.97438 * 23 21 20 34 34 H 1.07993 * 120.12354 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1080 11 6 3.4586 -3.4378 0.0916 12 6 4.2131 -4.5910 0.2001 13 6 3.5938 -5.8175 0.3260 14 6 2.1976 -5.8965 0.3437 15 6 1.5328 -7.2033 0.4785 16 6 0.4701 -7.3375 1.2960 17 6 0.1132 -6.2555 2.2165 18 7 0.8202 -5.1715 2.4208 19 6 0.3559 -4.3074 3.2776 20 6 -0.8331 -4.6480 3.8667 21 6 -1.5610 -3.8539 4.8568 22 8 -1.1140 -2.7847 5.2268 23 8 -2.7280 -4.3074 5.3595 24 16 -1.3327 -6.2101 3.2210 25 6 1.4362 -4.7306 0.2281 26 1 -0.4850 0.8400 0.0004 27 1 3.9499 -2.4810 -0.0062 28 1 5.2915 -4.5317 0.1863 29 1 4.1868 -6.7162 0.4101 30 1 1.8968 -8.0543 -0.0780 31 1 -0.1184 -8.2428 1.2726 32 1 0.8719 -3.3870 3.5074 33 1 -3.1343 -3.7147 6.0066 34 1 0.3576 -4.7847 0.2369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730149448.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:12 Heat of formation + Delta-G solvation = -8.291513 kcal Electronic energy + Delta-G solvation = -23230.067398 eV Core-core repulsion = 19608.041719 eV Total energy + Delta-G solvation = -3622.025680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.24162 -39.53580 -38.58546 -36.63351 -36.01685 -34.09682 -32.20801 -30.31032 -29.49907 -28.60947 -25.91539 -25.22183 -23.36228 -22.38995 -21.33907 -20.41931 -19.03113 -18.47462 -17.72315 -17.21303 -16.62456 -16.33336 -15.70434 -15.24421 -15.09571 -14.49333 -14.38136 -14.02336 -13.89851 -13.80900 -13.47170 -13.03297 -12.81704 -12.41142 -12.07041 -11.65499 -11.62629 -11.49588 -11.33216 -10.91744 -10.76816 -10.73388 -10.62660 -10.42042 -10.20994 -9.59957 -9.38869 -9.24749 -8.77937 -8.45278 -7.40954 -7.11511 -6.37517 -3.95810 -0.07643 1.25085 1.49382 1.66246 2.41645 2.48692 2.79587 3.08562 3.16970 3.19075 3.21115 3.34202 4.02435 4.22941 4.67196 4.91534 5.03980 5.18556 5.21393 5.41513 5.54085 5.66958 5.71817 5.87955 6.06582 6.24322 6.26749 6.30359 6.34675 6.41529 6.74674 6.96235 7.11728 7.27903 7.41015 7.48771 7.79934 7.82197 7.86312 8.06815 9.08456 9.79900 10.80587 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.005750 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.070210 B = 4868.010567 C = 7096.733200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.040 3.960 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.389 4.389 8 H 0.089 0.911 9 O -0.182 6.182 10 C 0.143 3.857 11 C -0.216 4.216 12 C -0.089 4.089 13 C -0.179 4.179 14 C -0.048 4.048 15 C -0.001 4.001 16 C -0.143 4.143 17 C 0.133 3.867 18 N -0.442 5.442 19 C 0.163 3.837 20 C -0.305 4.305 21 C 0.562 3.438 22 O -0.499 6.499 23 O -0.506 6.506 24 S 0.135 5.865 25 C -0.102 4.102 26 H 0.269 0.731 27 H 0.124 0.876 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.187 0.813 33 H 0.412 0.588 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.173 -14.388 5.552 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.164 4.164 3 Si 0.762 3.238 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.107 0.893 9 O -0.086 6.086 10 C 0.090 3.910 11 C -0.236 4.236 12 C -0.107 4.107 13 C -0.198 4.198 14 C -0.048 4.048 15 C -0.026 4.026 16 C -0.165 4.165 17 C -0.135 4.135 18 N -0.153 5.153 19 C 0.001 3.999 20 C -0.427 4.427 21 C 0.404 3.596 22 O -0.389 6.389 23 O -0.317 6.317 24 S 0.396 5.604 25 C -0.122 4.122 26 H 0.079 0.921 27 H 0.142 0.858 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.204 0.796 33 H 0.269 0.731 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.821 -14.786 5.293 15.810 hybrid contribution 0.578 2.149 0.690 2.329 sum -1.243 -12.637 5.983 14.037 Atomic orbital electron populations 1.70022 1.05889 1.27565 1.46424 1.25228 0.95777 0.98662 0.96763 0.85841 0.78734 0.80119 0.79099 1.19610 1.20372 1.19545 1.21210 0.91620 0.80896 1.52800 0.89330 1.83982 1.34079 1.11279 1.79307 1.19115 0.90158 0.87939 0.93774 1.21247 0.93800 0.98882 1.09666 1.20567 0.98276 0.92337 0.99535 1.20580 0.92803 0.96949 1.09509 1.18285 0.93030 0.91206 1.02313 1.22507 0.91524 0.96077 0.92518 1.21177 1.00758 0.96079 0.98517 1.26684 0.92117 0.95874 0.98857 1.67348 1.31121 1.01433 1.15444 1.22626 0.90395 0.98834 0.88008 1.24598 1.04076 1.02346 1.11661 1.19041 0.78719 0.83006 0.78822 1.91001 1.67735 1.21667 1.58477 1.85015 1.35976 1.52614 1.58126 1.84691 1.24128 1.14976 1.36586 1.19919 0.98119 0.89524 1.04677 0.92139 0.85830 0.87629 0.87706 0.84676 0.83982 0.79638 0.73073 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.78 13.67 55.48 0.76 -25.02 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 8 H 0.09 2.31 5.19 -52.49 -0.27 2.04 16 9 O -0.18 -5.20 9.75 0.02 0.00 -5.20 16 10 C 0.14 3.42 6.64 -39.17 -0.26 3.16 16 11 C -0.22 -4.69 9.16 -39.28 -0.36 -5.05 16 12 C -0.09 -1.61 10.02 -39.68 -0.40 -2.01 16 13 C -0.18 -2.98 9.79 -39.07 -0.38 -3.37 16 14 C -0.05 -0.82 4.67 -105.08 -0.49 -1.31 16 15 C 0.00 -0.01 9.82 -37.16 -0.36 -0.38 16 16 C -0.14 -1.70 10.07 -37.50 -0.38 -2.08 16 17 C 0.13 1.98 6.26 -14.58 -0.09 1.89 16 18 N -0.44 -7.95 5.72 -11.08 -0.06 -8.01 16 19 C 0.16 2.99 11.05 -18.68 -0.21 2.79 16 20 C -0.30 -5.01 6.51 -36.79 -0.24 -5.25 16 21 C 0.56 8.95 8.27 33.98 0.28 9.23 16 22 O -0.50 -9.45 17.60 -19.38 -0.34 -9.80 16 23 O -0.51 -6.02 13.44 -41.09 -0.55 -6.58 16 24 S 0.14 1.80 23.27 -107.50 -2.50 -0.70 16 25 C -0.10 -2.13 6.31 -38.92 -0.25 -2.37 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 27 H 0.12 2.71 5.62 -52.48 -0.30 2.41 16 28 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.19 3.61 8.06 -52.49 -0.42 3.19 16 33 H 0.41 2.92 8.98 45.56 0.41 3.33 16 34 H 0.10 2.24 6.87 -52.49 -0.36 1.88 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -34.30 323.13 -7.56 -41.86 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -1.77 Total: 6.95 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -2.94 Total: -14.38 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.70 Total: -33.04 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.89 Total: -21.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.50 Total: -0.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.30 -7.56 -41.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730149448.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.566 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds