Wall clock time and date at job start Tue Mar 31 2020 12:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86804 * 120.00076 * 2 1 4 4 H 1.48501 * 109.46828 * 239.99953 * 3 2 1 5 5 H 1.48500 * 109.46758 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47000 * 119.99960 * 3 2 1 7 7 C 1.38653 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99961 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99979 * 0.02562 * 7 2 1 10 10 C 1.35756 * 117.00108 * 185.07167 * 9 7 2 11 11 C 1.39044 * 119.98369 * 354.27239 * 10 9 7 12 12 C 1.38240 * 120.27433 * 180.02562 * 11 10 9 13 13 C 1.37976 * 120.24377 * 359.97438 * 12 11 10 14 14 C 1.39849 * 119.96756 * 0.02562 * 13 12 11 15 15 C 1.47243 * 120.13606 * 180.02562 * 14 13 12 16 16 C 1.34746 * 119.99988 * 137.20200 * 15 14 13 17 17 C 1.46473 * 119.99740 * 349.74121 * 16 15 14 18 18 N 1.31021 * 125.28427 * 353.29546 * 17 16 15 19 19 C 1.30241 * 117.33096 * 180.02562 * 18 17 16 20 20 C 1.36990 * 115.29828 * 0.02562 * 19 18 17 21 21 C 1.46312 * 126.00584 * 180.02562 * 20 19 18 22 22 O 1.21647 * 120.00209 * 359.97438 * 21 20 19 23 23 O 1.34919 * 120.00308 * 179.97438 * 21 20 19 24 24 S 1.76116 * 125.28175 * 173.32365 * 17 16 15 25 25 C 1.38530 * 119.98725 * 174.55112 * 10 9 7 26 26 H 0.96998 * 120.00262 * 359.97438 * 1 2 3 27 27 H 1.08006 * 119.86688 * 0.02598 * 11 10 9 28 28 H 1.08004 * 119.87831 * 179.97438 * 12 11 10 29 29 H 1.07999 * 120.01997 * 179.97438 * 13 12 11 30 30 H 1.07999 * 120.00099 * 317.19460 * 15 14 13 31 31 H 1.07999 * 120.00153 * 169.74157 * 16 15 14 32 32 H 1.08000 * 122.35133 * 180.02562 * 19 18 17 33 33 H 0.96705 * 114.00136 * 179.97438 * 23 21 20 34 34 H 1.07993 * 120.12354 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1080 11 6 3.4586 -3.4378 0.0916 12 6 4.2131 -4.5910 0.2001 13 6 3.5938 -5.8175 0.3260 14 6 2.1976 -5.8965 0.3437 15 6 1.5328 -7.2033 0.4785 16 6 0.4701 -7.3375 1.2960 17 6 0.1132 -6.2555 2.2165 18 7 0.8202 -5.1715 2.4208 19 6 0.3559 -4.3074 3.2776 20 6 -0.8331 -4.6480 3.8667 21 6 -1.5610 -3.8539 4.8568 22 8 -1.1140 -2.7847 5.2268 23 8 -2.7280 -4.3074 5.3595 24 16 -1.3327 -6.2101 3.2210 25 6 1.4362 -4.7306 0.2281 26 1 -0.4850 0.8400 0.0004 27 1 3.9499 -2.4810 -0.0062 28 1 5.2915 -4.5317 0.1863 29 1 4.1868 -6.7162 0.4101 30 1 1.8968 -8.0543 -0.0780 31 1 -0.1184 -8.2428 1.2726 32 1 0.8719 -3.3870 3.5074 33 1 -3.1343 -3.7147 6.0066 34 1 0.3576 -4.7847 0.2369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730149448.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:11 Heat of formation + Delta-G solvation = -31.746899 kcal Electronic energy + Delta-G solvation = -23231.084500 eV Core-core repulsion = 19608.041719 eV Total energy + Delta-G solvation = -3623.042782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51419 -40.91935 -40.14347 -38.24345 -37.22694 -35.35090 -34.22455 -31.64054 -31.02380 -30.07495 -27.38847 -27.00487 -24.66343 -23.76179 -22.89042 -21.83405 -20.22544 -19.98066 -19.13352 -18.91861 -18.02122 -17.55804 -16.98897 -16.71489 -16.56276 -16.13261 -15.97228 -15.49070 -15.30094 -15.26116 -14.96456 -14.42183 -14.16166 -14.00378 -13.52806 -13.39447 -13.01724 -12.82113 -12.70597 -12.53309 -12.31578 -12.21577 -12.11427 -12.04310 -11.41760 -11.15536 -10.89538 -10.76424 -10.52955 -9.71299 -8.83820 -8.72792 -8.43927 -6.09991 -1.28477 0.08978 0.20968 0.42979 0.88614 1.09575 1.31251 1.41933 1.47122 1.56341 1.94408 2.09572 2.18312 2.91513 3.09913 3.30366 3.58532 3.83153 3.94277 4.10703 4.20190 4.39161 4.39743 4.59433 4.62476 4.79614 4.97023 5.00435 5.14302 5.23576 5.27175 5.41001 5.45835 5.76082 5.83963 5.85784 6.07762 6.33044 6.59153 6.69433 7.01879 7.87730 8.79427 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.010044 B = 0.005750 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.070210 B = 4868.010567 C = 7096.733200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.012 2.988 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.404 4.404 8 H 0.096 0.904 9 O -0.238 6.238 10 C 0.102 3.898 11 C -0.235 4.235 12 C -0.090 4.090 13 C -0.159 4.159 14 C -0.038 4.038 15 C -0.007 4.007 16 C -0.129 4.129 17 C 0.113 3.887 18 N -0.475 5.475 19 C 0.139 3.861 20 C -0.330 4.330 21 C 0.566 3.434 22 O -0.541 6.541 23 O -0.489 6.489 24 S 0.223 5.777 25 C -0.109 4.109 26 H 0.269 0.731 27 H 0.109 0.891 28 H 0.139 0.861 29 H 0.155 0.845 30 H 0.190 0.810 31 H 0.195 0.805 32 H 0.153 0.847 33 H 0.434 0.566 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 -18.645 5.525 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.221 4.221 3 Si 0.831 3.169 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.481 4.481 8 H 0.114 0.886 9 O -0.146 6.146 10 C 0.053 3.947 11 C -0.254 4.254 12 C -0.108 4.108 13 C -0.178 4.178 14 C -0.039 4.039 15 C -0.032 4.032 16 C -0.150 4.150 17 C -0.154 4.154 18 N -0.188 5.188 19 C -0.023 4.023 20 C -0.452 4.452 21 C 0.410 3.590 22 O -0.433 6.433 23 O -0.302 6.302 24 S 0.486 5.514 25 C -0.129 4.129 26 H 0.077 0.923 27 H 0.127 0.873 28 H 0.157 0.843 29 H 0.172 0.828 30 H 0.207 0.793 31 H 0.212 0.788 32 H 0.170 0.830 33 H 0.296 0.704 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.932 -19.118 5.284 19.857 hybrid contribution 0.297 3.037 0.778 3.149 sum -0.634 -16.081 6.062 17.198 Atomic orbital electron populations 1.70183 1.07914 1.28376 1.49724 1.26477 0.96772 1.02526 0.96371 0.84747 0.77465 0.74831 0.79817 1.17897 1.19771 1.18632 1.21662 0.92194 0.81689 1.52553 0.88629 1.83936 1.35748 1.12445 1.82488 1.19664 0.91393 0.87803 0.95859 1.21326 0.93230 0.99961 1.10926 1.20977 0.99872 0.91668 0.98271 1.21206 0.92969 0.97975 1.05602 1.18809 0.93548 0.92224 0.99272 1.22848 0.91476 0.94996 0.93893 1.21848 1.00278 0.96254 0.96611 1.27409 0.92764 0.95746 0.99477 1.67251 1.33031 1.02544 1.15949 1.22257 0.91672 0.98673 0.89714 1.24810 1.03827 1.04686 1.11894 1.19056 0.79273 0.82259 0.78371 1.90980 1.68986 1.23440 1.59921 1.84954 1.34112 1.52745 1.58419 1.84219 1.21750 1.11260 1.34177 1.19974 0.97568 0.89999 1.05400 0.92262 0.87330 0.84277 0.82774 0.79281 0.78828 0.83018 0.70444 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.29 13.67 21.61 0.30 -59.00 16 2 C -0.02 -1.48 5.49 84.83 0.47 -1.01 16 3 Si 1.01 45.43 29.55 68.60 2.03 47.46 16 4 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.40 -24.56 9.49 67.92 0.64 -23.92 16 8 H 0.10 5.38 5.19 -2.91 -0.02 5.37 16 9 O -0.24 -14.86 9.75 -22.83 -0.22 -15.08 16 10 C 0.10 5.20 6.64 22.53 0.15 5.35 16 11 C -0.24 -10.57 9.16 22.46 0.21 -10.37 16 12 C -0.09 -3.09 10.02 22.21 0.22 -2.87 16 13 C -0.16 -4.66 9.79 22.60 0.22 -4.44 16 14 C -0.04 -1.20 4.67 -20.16 -0.09 -1.30 16 15 C -0.01 -0.14 9.82 23.84 0.23 0.10 16 16 C -0.13 -2.41 10.07 23.62 0.24 -2.17 16 17 C 0.11 3.15 6.26 86.96 0.54 3.69 16 18 N -0.47 -17.45 5.72 -188.97 -1.08 -18.53 16 19 C 0.14 5.51 11.05 84.64 0.94 6.45 16 20 C -0.33 -11.14 6.51 24.08 0.16 -10.99 16 21 C 0.57 18.59 8.27 69.92 0.58 19.17 16 22 O -0.54 -21.80 17.60 19.35 0.34 -21.46 16 23 O -0.49 -11.10 13.44 -58.34 -0.78 -11.88 16 24 S 0.22 5.45 23.27 -56.49 -1.31 4.14 16 25 C -0.11 -4.66 6.31 22.70 0.14 -4.52 16 26 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 27 H 0.11 5.07 5.62 -2.91 -0.02 5.05 16 28 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 29 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.15 6.81 8.06 -2.91 -0.02 6.79 16 33 H 0.43 5.60 8.98 -74.05 -0.67 4.94 16 34 H 0.09 3.88 6.87 -2.91 -0.02 3.86 16 Total: -1.00 -85.58 323.13 4.42 -81.16 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.52 Total: 20.00 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 4.64 Total: -26.82 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -0.78 Total: -77.52 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.67 Total: -48.42 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.31 Total: 4.14 kcal Total: -85.58 4.42 -81.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730149448.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.412 kcal (2) G-P(sol) polarization free energy of solvation -85.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds