Wall clock time and date at job start Tue Mar 31 2020 11:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46907 * 110.99954 * 2 1 4 4 C 1.50704 * 109.47021 * 66.04256 * 3 2 1 5 5 H 1.07997 * 119.99834 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99856 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99999 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99931 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47020 * 90.00339 * 8 6 4 10 10 H 1.48506 * 109.47107 * 210.00656 * 8 6 4 11 11 H 1.48495 * 109.47198 * 330.00399 * 8 6 4 12 12 C 1.46899 * 111.00599 * 236.04634 * 2 1 3 13 13 H 1.09000 * 109.46953 * 52.63131 * 12 2 1 14 14 C 1.50706 * 109.46723 * 292.63774 * 12 2 1 15 15 O 1.20829 * 119.99691 * 359.97438 * 14 12 2 16 16 O 1.34222 * 119.99789 * 179.97438 * 14 12 2 17 17 C 1.50700 * 109.47263 * 172.63806 * 12 2 1 18 18 C 1.38267 * 119.97529 * 227.29800 * 17 12 2 19 19 C 1.38201 * 120.03498 * 179.97438 * 18 17 12 20 20 C 1.38343 * 120.00309 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 120.02094 * 180.02562 * 20 19 18 22 22 C 1.38448 * 119.96003 * 0.02562 * 20 19 18 23 23 Cl 1.73595 * 120.01914 * 179.97438 * 22 20 19 24 24 C 1.38193 * 119.98266 * 47.01868 * 17 12 2 25 25 H 1.08998 * 109.47625 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47066 * 59.94767 * 1 2 3 27 27 H 1.08998 * 109.47689 * 299.94987 * 1 2 3 28 28 H 1.08995 * 109.47027 * 186.03999 * 3 2 1 29 29 H 1.09004 * 109.46847 * 306.04542 * 3 2 1 30 30 H 0.97001 * 120.00209 * 179.97438 * 7 6 4 31 31 H 0.96699 * 117.00066 * 179.97438 * 16 14 12 32 32 H 1.07998 * 119.98297 * 359.95109 * 18 17 12 33 33 H 1.08003 * 119.99817 * 179.97438 * 19 18 17 34 34 H 1.08007 * 120.00316 * 0.02562 * 24 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2985 5 1 1.0744 1.5113 2.0487 6 6 2.0275 3.3492 1.5289 7 7 2.7127 4.0016 0.6154 8 14 1.5824 4.1870 3.1380 9 1 2.6584 3.9501 4.1336 10 1 1.4309 5.6468 2.9107 11 1 0.3040 3.6304 3.6489 12 6 1.9955 -0.7659 -1.1375 13 1 1.5434 -0.4028 -2.0605 14 6 1.6650 -2.2251 -0.9566 15 8 1.0539 -2.5895 0.0200 16 8 2.0494 -3.1198 -1.8804 17 6 3.4910 -0.5947 -1.2093 18 6 4.0951 -0.2966 -2.4167 19 6 5.4664 -0.1388 -2.4838 20 6 6.2355 -0.2786 -1.3424 21 17 7.9581 -0.0799 -1.4260 22 6 5.6306 -0.5772 -0.1333 23 17 6.5943 -0.7536 1.2997 24 6 4.2572 -0.7301 -0.0672 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5147 -0.8895 27 1 -0.3634 0.5130 0.8904 28 1 3.0796 1.3445 -0.1081 29 1 1.5610 1.9274 -0.8310 30 1 2.9873 4.9178 0.7773 31 1 1.8148 -4.0442 -1.7206 32 1 3.4951 -0.1873 -3.3080 33 1 5.9377 0.0936 -3.4274 34 1 3.7842 -0.9590 0.8765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737412017.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:32 Heat of formation + Delta-G solvation = -64.830489 kcal Electronic energy + Delta-G solvation = -22340.307444 eV Core-core repulsion = 18711.353495 eV Total energy + Delta-G solvation = -3628.953950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.53846 -39.17967 -37.02216 -36.35260 -36.21062 -35.55252 -32.74550 -31.36686 -30.78203 -28.05503 -26.76780 -24.59039 -22.93655 -22.34047 -21.68714 -19.80459 -17.95232 -17.28590 -16.81566 -16.21854 -16.06481 -15.42543 -15.02743 -14.68409 -14.37708 -13.97887 -13.77742 -13.61130 -13.38306 -12.85025 -12.38409 -12.10745 -11.77567 -11.72166 -11.66317 -11.45316 -11.24159 -11.15069 -10.93826 -10.83897 -10.76955 -10.67732 -10.66763 -10.18237 -9.90302 -9.31058 -8.74450 -8.53168 -8.37914 -7.52555 -6.07340 -4.08554 1.03253 1.28376 1.98576 2.34339 2.40364 3.06367 3.31229 3.37533 3.40855 3.58760 4.39496 4.60181 4.71799 4.84338 5.15754 5.27104 5.30804 5.38460 5.48255 5.52218 5.88869 6.02387 6.08717 6.14686 6.20093 6.47707 6.56952 6.69852 6.75806 7.08758 7.15813 7.65816 7.87007 8.02169 8.09933 8.38118 8.97801 9.55523 11.03305 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.006238 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.677153 B = 4487.817395 C = 6248.633292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.519 5.519 3 C 0.191 3.809 4 C -0.509 4.509 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.134 3.866 13 H 0.081 0.919 14 C 0.484 3.516 15 O -0.488 6.488 16 O -0.519 6.519 17 C -0.054 4.054 18 C -0.085 4.085 19 C -0.103 4.103 20 C -0.026 4.026 21 Cl -0.060 7.060 22 C -0.030 4.030 23 Cl -0.053 7.053 24 C -0.054 4.054 25 H 0.060 0.940 26 H 0.014 0.986 27 H 0.082 0.918 28 H 0.042 0.958 29 H -0.006 1.006 30 H 0.262 0.738 31 H 0.405 0.595 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.722 -11.459 -8.112 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.245 5.245 3 C 0.067 3.933 4 C -0.547 4.547 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.024 3.976 13 H 0.098 0.902 14 C 0.324 3.676 15 O -0.373 6.373 16 O -0.330 6.330 17 C -0.055 4.055 18 C -0.104 4.104 19 C -0.121 4.121 20 C -0.054 4.054 21 Cl -0.031 7.031 22 C -0.058 4.058 23 Cl -0.024 7.024 24 C -0.073 4.073 25 H 0.079 0.921 26 H 0.032 0.968 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.263 0.737 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.125 -11.187 -7.375 14.346 hybrid contribution -0.390 0.509 0.359 0.735 sum 4.735 -10.678 -7.016 13.626 Atomic orbital electron populations 1.22383 0.87153 1.00729 1.01354 1.62044 1.08266 1.18086 1.36118 1.19941 0.96205 0.79872 0.97271 1.21063 1.35296 0.96929 1.01444 0.91671 1.24940 0.95158 0.97252 0.96934 1.69946 1.37970 1.11508 1.33914 0.86510 0.78946 0.78421 0.83646 1.20565 1.21321 1.19810 1.20010 0.92372 0.87874 0.97388 0.90165 1.23397 0.75535 0.88947 0.79763 1.90692 1.36847 1.80305 1.29490 1.84548 1.75518 1.22174 1.50773 1.19273 0.93369 0.99620 0.93206 1.21012 0.93948 0.97908 0.97542 1.20863 0.93281 1.00934 0.97058 1.20742 0.85535 1.05139 0.93979 1.98364 1.10352 1.95752 1.98587 1.20660 0.92237 1.05588 0.87273 1.98372 1.70905 1.95880 1.37226 1.20991 0.90075 0.96271 0.99994 0.92141 0.96783 0.89910 0.93975 0.98803 0.92860 0.73661 0.84433 0.84071 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.00 60.06 0.54 1.15 16 2 N -0.52 -10.60 3.94 -239.14 -0.94 -11.54 16 3 C 0.19 4.64 4.29 -4.97 -0.02 4.62 16 4 C -0.51 -13.74 8.52 -34.44 -0.29 -14.04 16 5 H 0.07 1.77 7.10 -52.49 -0.37 1.39 16 6 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 7 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.13 2.23 2.22 -70.01 -0.16 2.07 16 13 H 0.08 1.21 7.90 -51.93 -0.41 0.80 16 14 C 0.48 7.39 7.22 36.01 0.26 7.65 16 15 O -0.49 -8.76 15.20 -18.75 -0.29 -9.05 16 16 O -0.52 -5.94 13.34 -39.24 -0.52 -6.46 16 17 C -0.05 -0.87 3.31 -104.63 -0.35 -1.22 16 18 C -0.09 -1.18 9.67 -39.58 -0.38 -1.56 16 19 C -0.10 -1.36 9.83 -39.56 -0.39 -1.75 16 20 C -0.03 -0.40 6.32 -39.47 -0.25 -0.64 16 21 Cl -0.06 -0.81 27.96 -51.86 -1.45 -2.26 16 22 C -0.03 -0.50 6.32 -39.46 -0.25 -0.75 16 23 Cl -0.05 -0.84 27.96 -51.86 -1.45 -2.29 16 24 C -0.05 -0.95 7.77 -39.56 -0.31 -1.26 16 25 H 0.06 1.08 5.95 -51.93 -0.31 0.77 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 1.69 6.86 -51.93 -0.36 1.34 16 28 H 0.04 1.08 5.57 -51.93 -0.29 0.79 16 29 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.41 2.80 9.10 45.56 0.41 3.22 16 32 H 0.14 1.52 7.99 -52.49 -0.42 1.10 16 33 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.15 2.88 7.93 -52.48 -0.42 2.46 16 LS Contribution 323.51 15.07 4.88 4.88 Total: -1.00 -30.87 323.51 -8.31 -39.18 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -2.56 Total: 0.35 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.69 Total: -4.19 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.21 Total: -36.55 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.81 Total: -15.51 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -2.90 Total: -4.55 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.87 -8.31 -39.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737412017.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.648 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds