Wall clock time and date at job start Tue Mar 31 2020 11:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46907 * 110.99954 * 2 1 4 4 C 1.50704 * 109.47021 * 66.04256 * 3 2 1 5 5 H 1.07997 * 119.99834 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99856 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99999 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99931 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47020 * 90.00339 * 8 6 4 10 10 H 1.48506 * 109.47107 * 210.00656 * 8 6 4 11 11 H 1.48495 * 109.47198 * 330.00399 * 8 6 4 12 12 C 1.46899 * 111.00599 * 236.04634 * 2 1 3 13 13 H 1.09000 * 109.46953 * 52.63131 * 12 2 1 14 14 C 1.50706 * 109.46723 * 292.63774 * 12 2 1 15 15 O 1.20829 * 119.99691 * 359.97438 * 14 12 2 16 16 O 1.34222 * 119.99789 * 179.97438 * 14 12 2 17 17 C 1.50700 * 109.47263 * 172.63806 * 12 2 1 18 18 C 1.38267 * 119.97529 * 227.29800 * 17 12 2 19 19 C 1.38201 * 120.03498 * 179.97438 * 18 17 12 20 20 C 1.38343 * 120.00309 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 120.02094 * 180.02562 * 20 19 18 22 22 C 1.38448 * 119.96003 * 0.02562 * 20 19 18 23 23 Cl 1.73595 * 120.01914 * 179.97438 * 22 20 19 24 24 C 1.38193 * 119.98266 * 47.01868 * 17 12 2 25 25 H 1.08998 * 109.47625 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47066 * 59.94767 * 1 2 3 27 27 H 1.08998 * 109.47689 * 299.94987 * 1 2 3 28 28 H 1.08995 * 109.47027 * 186.03999 * 3 2 1 29 29 H 1.09004 * 109.46847 * 306.04542 * 3 2 1 30 30 H 0.97001 * 120.00209 * 179.97438 * 7 6 4 31 31 H 0.96699 * 117.00066 * 179.97438 * 16 14 12 32 32 H 1.07998 * 119.98297 * 359.95109 * 18 17 12 33 33 H 1.08003 * 119.99817 * 179.97438 * 19 18 17 34 34 H 1.08007 * 120.00316 * 0.02562 * 24 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2985 5 1 1.0744 1.5113 2.0487 6 6 2.0275 3.3492 1.5289 7 7 2.7127 4.0016 0.6154 8 14 1.5824 4.1870 3.1380 9 1 2.6584 3.9501 4.1336 10 1 1.4309 5.6468 2.9107 11 1 0.3040 3.6304 3.6489 12 6 1.9955 -0.7659 -1.1375 13 1 1.5434 -0.4028 -2.0605 14 6 1.6650 -2.2251 -0.9566 15 8 1.0539 -2.5895 0.0200 16 8 2.0494 -3.1198 -1.8804 17 6 3.4910 -0.5947 -1.2093 18 6 4.0951 -0.2966 -2.4167 19 6 5.4664 -0.1388 -2.4838 20 6 6.2355 -0.2786 -1.3424 21 17 7.9581 -0.0799 -1.4260 22 6 5.6306 -0.5772 -0.1333 23 17 6.5943 -0.7536 1.2997 24 6 4.2572 -0.7301 -0.0672 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5147 -0.8895 27 1 -0.3634 0.5130 0.8904 28 1 3.0796 1.3445 -0.1081 29 1 1.5610 1.9274 -0.8310 30 1 2.9873 4.9178 0.7773 31 1 1.8148 -4.0442 -1.7206 32 1 3.4951 -0.1873 -3.3080 33 1 5.9377 0.0936 -3.4274 34 1 3.7842 -0.9590 0.8765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737412017.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:31 Heat of formation + Delta-G solvation = -84.188511 kcal Electronic energy + Delta-G solvation = -22341.146871 eV Core-core repulsion = 18711.353495 eV Total energy + Delta-G solvation = -3629.793376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.77349 -40.35029 -38.36983 -37.53490 -37.41343 -36.82084 -34.72238 -32.74016 -31.95777 -29.74093 -28.26036 -26.35513 -24.11987 -23.56814 -23.27995 -21.19376 -19.13919 -18.60698 -18.46255 -17.62135 -17.29541 -16.77281 -16.55421 -16.21399 -15.82489 -15.47209 -14.98039 -14.85247 -14.78947 -14.20721 -14.04634 -13.63652 -13.30140 -12.94642 -12.89899 -12.85703 -12.74010 -12.65389 -12.54248 -12.36461 -12.23798 -12.00237 -11.98189 -11.87337 -11.47633 -11.20962 -10.58725 -9.90499 -9.65228 -9.14632 -8.17940 -6.24883 -0.15177 0.10612 0.80851 1.14928 1.20802 1.41036 1.42602 1.52189 1.92263 2.36743 2.45004 3.15595 3.28208 3.41216 3.64428 3.99982 4.10369 4.22999 4.33335 4.35330 4.53915 4.66161 4.75540 4.85596 4.99551 5.10503 5.18299 5.30133 5.31838 5.54384 5.63039 5.66339 6.03006 6.20618 6.48578 6.88040 7.05505 7.43076 8.92289 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.006238 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.677153 B = 4487.817395 C = 6248.633292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.532 5.532 3 C 0.212 3.788 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.129 3.871 13 H 0.102 0.898 14 C 0.497 3.503 15 O -0.521 6.521 16 O -0.502 6.502 17 C -0.068 4.068 18 C -0.079 4.079 19 C -0.093 4.093 20 C -0.034 4.034 21 Cl -0.048 7.048 22 C -0.045 4.045 23 Cl -0.058 7.058 24 C -0.073 4.073 25 H 0.074 0.926 26 H 0.023 0.977 27 H 0.061 0.939 28 H 0.028 0.972 29 H -0.028 1.028 30 H 0.263 0.737 31 H 0.429 0.571 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 -11.949 -9.609 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.258 5.258 3 C 0.087 3.913 4 C -0.560 4.560 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.191 1.191 12 C 0.020 3.980 13 H 0.120 0.880 14 C 0.338 3.662 15 O -0.409 6.409 16 O -0.315 6.315 17 C -0.069 4.069 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.062 4.062 21 Cl -0.019 7.019 22 C -0.073 4.073 23 Cl -0.029 7.029 24 C -0.093 4.093 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.046 0.954 29 H -0.011 1.011 30 H 0.072 0.928 31 H 0.291 0.709 32 H 0.189 0.811 33 H 0.194 0.806 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.261 -11.722 -8.889 15.623 hybrid contribution -0.382 0.566 0.738 1.005 sum 4.879 -11.156 -8.151 14.653 Atomic orbital electron populations 1.22308 0.86533 1.01383 1.00790 1.61819 1.08905 1.16170 1.38922 1.19503 0.95155 0.81594 0.95093 1.21378 1.34869 0.97343 1.02431 0.92478 1.25681 0.95152 0.97961 0.99923 1.70041 1.39032 1.11786 1.35574 0.85589 0.78791 0.77562 0.79946 1.20472 1.20699 1.19128 1.20060 0.92778 0.88558 0.96647 0.88025 1.22969 0.74770 0.88877 0.79596 1.90689 1.38551 1.80781 1.30886 1.84466 1.74610 1.23461 1.49004 1.19373 0.93009 1.00581 0.93890 1.21407 0.94527 0.96154 0.97656 1.21301 0.93058 0.99047 0.97758 1.20955 0.86409 1.04882 0.93964 1.98367 1.09359 1.95651 1.98536 1.20771 0.92081 1.06548 0.87884 1.98360 1.70850 1.95971 1.37697 1.20835 0.90731 0.98080 0.99637 0.90762 0.95815 0.91978 0.95370 1.01053 0.92816 0.70930 0.81087 0.80609 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 9.00 127.69 1.15 2.58 16 2 N -0.53 -21.84 3.94 -910.49 -3.59 -25.43 16 3 C 0.21 10.45 4.29 85.56 0.37 10.82 16 4 C -0.52 -28.69 8.52 25.60 0.22 -28.48 16 5 H 0.06 3.16 7.10 -2.91 -0.02 3.14 16 6 C 0.01 0.65 5.46 84.66 0.46 1.11 16 7 N -0.92 -53.66 13.29 21.45 0.28 -53.38 16 8 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.13 4.16 2.22 43.42 0.10 4.25 16 13 H 0.10 2.84 7.90 -2.39 -0.02 2.82 16 14 C 0.50 14.42 7.22 71.24 0.51 14.94 16 15 O -0.52 -18.30 15.20 21.95 0.33 -17.97 16 16 O -0.50 -10.07 13.34 -51.34 -0.68 -10.75 16 17 C -0.07 -2.13 3.31 -19.87 -0.07 -2.19 16 18 C -0.08 -1.96 9.67 22.27 0.22 -1.75 16 19 C -0.09 -2.21 9.83 22.29 0.22 -1.99 16 20 C -0.03 -0.98 6.32 22.34 0.14 -0.84 16 21 Cl -0.05 -1.24 27.96 -2.72 -0.08 -1.31 16 22 C -0.05 -1.50 6.32 22.35 0.14 -1.36 16 23 Cl -0.06 -1.86 27.96 -2.72 -0.08 -1.94 16 24 C -0.07 -2.60 7.77 22.29 0.17 -2.42 16 25 H 0.07 2.61 5.95 -2.39 -0.01 2.60 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 2.58 6.86 -2.39 -0.02 2.56 16 28 H 0.03 1.48 5.57 -2.39 -0.01 1.46 16 29 H -0.03 -1.49 8.12 -2.39 -0.02 -1.51 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.43 4.61 9.10 -74.06 -0.67 3.93 16 32 H 0.17 3.05 7.99 -2.91 -0.02 3.02 16 33 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.13 5.04 7.93 -2.91 -0.02 5.02 16 Total: -1.00 -67.01 323.51 2.34 -64.67 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.48 Total: 5.23 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 3.63 Total: -5.33 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -3.30 Total: -78.81 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.35 Total: -28.72 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -3.09 SS G_CDS: -0.15 Total: -3.25 kcal Total: -67.01 2.34 -64.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737412017.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.515 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds