Wall clock time and date at job start Tue Mar 31 2020 12:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39757 * 125.83551 * 2 1 4 4 C 1.36116 * 107.82596 * 179.97438 * 3 2 1 5 5 N 1.39474 * 126.21325 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00246 * 0.03591 * 5 4 3 7 7 O 1.21293 * 119.99756 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99928 * 180.27323 * 6 5 4 9 9 H 1.09000 * 115.54468 * 325.38900 * 8 6 5 10 10 C 1.52990 * 117.49806 * 179.72210 * 8 6 5 11 11 C 1.52994 * 60.00136 * 252.50889 * 10 8 6 12 12 Cl 1.80299 * 117.49989 * 252.50893 * 11 10 8 13 13 Cl 1.80299 * 117.50063 * 107.49085 * 11 10 8 14 14 N 1.35260 * 107.56777 * 0.26765 * 4 3 2 15 15 C 1.46492 * 126.04676 * 179.69683 * 14 4 3 16 16 C 1.50696 * 109.47273 * 89.99676 * 15 14 4 17 17 H 1.08001 * 120.00025 * 0.02562 * 16 15 14 18 18 C 1.37886 * 120.00359 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99582 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00085 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47071 * 90.00142 * 20 18 16 22 22 H 1.48499 * 109.47087 * 209.99826 * 20 18 16 23 23 H 1.48498 * 109.47631 * 329.99869 * 20 18 16 24 24 N 1.30850 * 125.83985 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47273 * 89.99894 * 1 2 3 26 26 H 1.09004 * 109.47532 * 209.99740 * 1 2 3 27 27 H 1.08999 * 109.47708 * 330.00199 * 1 2 3 28 28 H 1.07994 * 126.08988 * 359.94373 * 3 2 1 29 29 H 0.97000 * 119.99436 * 180.02562 * 5 4 3 30 30 H 1.09005 * 117.50291 * 359.97438 * 10 8 6 31 31 H 1.08996 * 117.50251 * 145.01750 * 10 8 6 32 32 H 1.08999 * 109.47016 * 209.99948 * 15 14 4 33 33 H 1.09003 * 109.47379 * 329.99844 * 15 14 4 34 34 H 0.96999 * 119.99855 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6197 0.7122 0.0006 5 7 4.7512 1.5276 0.0003 6 6 4.6156 2.8685 0.0001 7 8 3.5095 3.3662 -0.0003 8 6 5.8383 3.7495 -0.0065 9 1 6.6955 3.3679 0.5482 10 6 5.6180 5.2635 -0.0130 11 6 6.1196 4.5580 -1.2745 12 17 7.8443 4.8069 -1.7376 13 17 4.9631 4.3839 -2.6467 14 7 3.6092 -0.6404 -0.0051 15 6 4.7870 -1.5115 -0.0129 16 6 5.1959 -1.8161 1.4052 17 1 4.6343 -1.4026 2.2298 18 6 6.2863 -2.6237 1.6500 19 7 6.9699 -3.1277 0.6458 20 14 6.7935 -3.0007 3.4078 21 1 6.0948 -4.2259 3.8726 22 1 8.2616 -3.2168 3.4638 23 1 6.4274 -1.8594 4.2844 24 7 2.2731 -1.0607 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9901 2.1597 -0.0009 29 1 5.6358 1.1295 0.0004 30 1 4.5888 5.6224 -0.0130 31 1 6.3306 5.8781 0.5370 32 1 4.5481 -2.4409 -0.5298 33 1 5.6066 -1.0099 -0.5275 34 1 7.7372 -3.6955 0.8180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743870088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:46 Heat of formation + Delta-G solvation = 39.035398 kcal Electronic energy + Delta-G solvation = -21675.627362 eV Core-core repulsion = 18083.470126 eV Total energy + Delta-G solvation = -3592.157236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.47991 -40.97527 -38.43257 -37.15550 -36.40549 -36.16859 -35.60377 -33.84246 -30.85042 -30.00868 -27.82260 -26.15455 -24.69392 -23.38750 -22.35240 -21.28140 -20.66386 -18.90633 -18.76083 -18.21932 -17.09181 -16.92307 -16.55267 -16.19051 -15.79194 -15.44695 -14.84672 -14.49816 -14.40446 -14.10411 -14.04753 -13.60923 -13.39600 -13.28299 -13.13045 -13.09448 -12.88452 -12.72460 -12.33702 -12.29421 -12.03188 -11.92663 -11.77398 -11.69406 -11.53067 -11.13678 -10.90587 -10.77139 -9.64636 -9.08667 -8.36841 -6.54588 -0.03765 0.66002 0.91447 1.30559 1.36449 1.39519 1.46905 1.49737 1.95292 2.13668 2.29104 2.34234 2.93680 2.93934 3.17988 3.35271 3.82998 4.09083 4.22870 4.56858 4.59686 4.68864 4.75026 4.83093 4.86041 4.89914 4.96003 5.20698 5.23146 5.50495 5.76010 5.95469 6.10722 6.22632 6.55654 6.84903 7.01499 7.17640 8.69709 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.004702 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.291972 B = 5953.850864 C = 7767.241527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.058 3.942 3 C -0.302 4.302 4 C 0.300 3.700 5 N -0.632 5.632 6 C 0.549 3.451 7 O -0.516 6.516 8 C -0.163 4.163 9 H 0.177 0.823 10 C -0.080 4.080 11 C 0.012 3.988 12 Cl -0.077 7.077 13 Cl -0.097 7.097 14 N -0.366 5.366 15 C 0.272 3.728 16 C -0.555 4.555 17 H 0.049 0.951 18 C 0.028 3.972 19 N -0.914 5.914 20 Si 0.969 3.031 21 H -0.277 1.277 22 H -0.269 1.269 23 H -0.269 1.269 24 N -0.330 5.330 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.171 0.829 29 H 0.422 0.578 30 H 0.134 0.866 31 H 0.169 0.831 32 H 0.026 0.974 33 H 0.047 0.953 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 18.383 -1.781 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.334 4.334 4 C 0.077 3.923 5 N -0.279 5.279 6 C 0.335 3.665 7 O -0.390 6.390 8 C -0.185 4.185 9 H 0.194 0.806 10 C -0.118 4.118 11 C -0.040 4.040 12 Cl -0.050 7.050 13 Cl -0.070 7.070 14 N -0.152 5.152 15 C 0.153 3.847 16 C -0.593 4.593 17 H 0.067 0.933 18 C -0.174 4.174 19 N -0.552 5.552 20 Si 0.793 3.207 21 H -0.203 1.203 22 H -0.194 1.194 23 H -0.193 1.193 24 N -0.156 5.156 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.188 0.812 29 H 0.259 0.741 30 H 0.153 0.847 31 H 0.186 0.814 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.359 17.313 -2.006 17.433 hybrid contribution 1.095 -0.348 0.364 1.206 sum 0.736 16.965 -1.642 17.060 Atomic orbital electron populations 1.20224 0.83931 1.03939 1.03820 1.22891 0.98736 0.90099 0.99028 1.21470 0.88864 1.00873 1.22212 1.18264 0.89374 0.82808 1.01835 1.42800 1.07768 1.05787 1.71592 1.19778 0.90572 0.80642 0.75458 1.90637 1.27027 1.73730 1.47572 1.23216 0.99436 0.96106 0.99716 0.80602 1.24211 1.06458 0.90537 0.90548 1.26615 0.82715 1.10165 0.84536 1.98773 1.15886 1.96741 1.93578 1.98793 1.60231 1.97895 1.50049 1.49156 1.06312 1.02865 1.56828 1.19217 0.78610 0.88964 0.97885 1.21402 1.13671 1.32690 0.91556 0.93293 1.25693 0.95396 0.94314 1.02018 1.69995 1.19578 1.32825 1.32821 0.85383 0.77828 0.78674 0.78779 1.20296 1.19405 1.19327 1.77320 0.86392 1.23668 1.28177 0.89337 0.90926 0.88687 0.81194 0.74084 0.84748 0.81350 0.95636 0.93524 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.44 71.23 0.74 -0.93 16 2 C 0.06 2.28 7.21 43.07 0.31 2.59 16 3 C -0.30 -12.06 9.58 22.14 0.21 -11.84 16 4 C 0.30 12.54 7.66 131.32 1.01 13.54 16 5 N -0.63 -21.43 5.41 -308.55 -1.67 -23.10 16 6 C 0.55 15.61 6.67 87.66 0.58 16.19 16 7 O -0.52 -16.65 13.22 -3.07 -0.04 -16.69 16 8 C -0.16 -3.05 6.03 -11.54 -0.07 -3.12 16 9 H 0.18 2.45 8.14 -2.39 -0.02 2.43 16 10 C -0.08 -1.07 9.73 30.59 0.30 -0.78 16 11 C 0.01 0.22 3.61 30.59 0.11 0.33 16 12 Cl -0.08 -1.35 29.29 -2.72 -0.08 -1.43 16 13 Cl -0.10 -2.33 28.18 -2.72 -0.08 -2.40 16 14 N -0.37 -17.49 3.60 -348.73 -1.26 -18.75 16 15 C 0.27 14.00 6.00 85.63 0.51 14.51 16 16 C -0.56 -30.07 9.39 25.60 0.24 -29.82 16 17 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 18 C 0.03 1.45 5.46 84.66 0.46 1.91 16 19 N -0.91 -49.88 13.29 21.45 0.28 -49.59 16 20 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 N -0.33 -15.62 12.56 -47.45 -0.60 -16.22 16 25 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.17 6.41 5.83 -2.91 -0.02 6.39 16 29 H 0.42 13.43 7.97 -92.71 -0.74 12.69 16 30 H 0.13 1.97 7.67 -2.38 -0.02 1.96 16 31 H 0.17 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.05 2.32 7.50 -2.39 -0.02 2.31 16 34 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -67.08 332.13 3.42 -63.66 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.42 Total: 18.31 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 4.41 Total: 2.58 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -3.24 Total: -107.66 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.04 Total: -16.69 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 17 Polarization: -3.68 SS G_CDS: -0.16 Total: -3.83 kcal Total: -67.08 3.42 -63.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743870088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.697 kcal (2) G-P(sol) polarization free energy of solvation -67.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds