Wall clock time and date at job start Tue Mar 31 2020 10:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47204 * 2 1 4 4 C 1.50695 * 109.47319 * 120.00812 * 2 1 3 5 5 O 1.20825 * 120.00224 * 119.99559 * 4 2 1 6 6 O 1.34232 * 119.99727 * 299.99634 * 4 2 1 7 7 C 1.45206 * 116.99878 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47021 * 179.97438 * 7 6 4 9 9 O 1.21297 * 119.99980 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00033 * 180.02562 * 8 7 6 11 11 C 1.37088 * 120.00081 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99914 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00230 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00498 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99920 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47208 * 89.99447 * 15 13 11 17 17 H 1.48495 * 109.46914 * 210.00201 * 15 13 11 18 18 H 1.48500 * 109.46598 * 329.99692 * 15 13 11 19 19 C 1.50703 * 109.46661 * 240.00320 * 2 1 3 20 20 C 1.33354 * 125.18711 * 119.99829 * 19 2 1 21 21 C 1.38474 * 114.92756 * 179.97438 * 20 19 2 22 22 C 1.33490 * 114.88492 * 0.02562 * 21 20 19 23 23 Cl 1.73606 * 125.20729 * 180.02562 * 22 21 20 24 24 S 1.75877 * 125.19105 * 299.69760 * 19 2 1 25 25 H 1.08994 * 109.47049 * 59.99417 * 1 2 3 26 26 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46661 * 299.99381 * 1 2 3 28 28 H 1.09004 * 109.47122 * 299.99817 * 7 6 4 29 29 H 1.09000 * 109.47070 * 59.99842 * 7 6 4 30 30 H 0.97004 * 119.99472 * 359.97438 * 10 8 7 31 31 H 0.97002 * 120.00283 * 180.02562 * 14 13 11 32 32 H 1.07999 * 122.53348 * 0.02562 * 20 19 2 33 33 H 1.08004 * 122.55561 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7270 -1.6929 1.1193 6 8 1.7082 -0.2520 2.4495 7 6 2.2279 -0.9861 3.5895 8 6 1.7639 -0.3290 4.8639 9 8 1.0637 0.6603 4.8161 10 7 2.1270 -0.8406 6.0568 11 6 1.7045 -0.2432 7.2160 12 1 1.0811 0.6377 7.1735 13 6 2.0784 -0.7709 8.4459 14 7 1.6738 -0.1980 9.5571 15 14 3.1561 -2.2950 8.5195 16 1 4.5848 -1.8905 8.5383 17 1 2.8429 -3.0636 9.7509 18 1 2.8971 -3.1423 7.3278 19 6 2.0323 -0.7104 -1.2306 20 6 2.8021 -0.1644 -2.1727 21 6 3.1404 -1.0124 -3.2138 22 6 2.6438 -2.2476 -3.1162 23 17 2.8987 -3.5226 -4.2665 24 16 1.6987 -2.3881 -1.6395 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8644 -2.0132 3.5567 29 1 3.3174 -0.9850 3.5563 30 1 2.6866 -1.6320 6.0949 31 1 1.9351 -0.5662 10.4157 32 1 3.1371 0.8613 -2.1266 33 1 3.7589 -0.6983 -4.0416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750552221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:00 Heat of formation + Delta-G solvation = -109.342840 kcal Electronic energy + Delta-G solvation = -20831.286792 eV Core-core repulsion = 17202.446348 eV Total energy + Delta-G solvation = -3628.840444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83611 -40.25563 -39.11828 -37.81457 -37.41986 -36.08669 -35.07793 -33.86710 -30.37019 -29.40432 -26.70620 -25.81378 -24.51938 -21.99892 -21.54148 -20.62640 -20.52579 -18.96975 -18.51511 -17.82279 -17.65262 -17.19636 -16.77201 -16.59982 -15.87990 -15.46367 -14.92201 -14.79449 -14.70510 -14.42473 -14.22057 -14.14654 -13.86400 -13.67716 -13.29266 -13.01190 -12.91136 -12.75174 -12.46570 -12.37201 -12.03860 -12.01162 -11.87382 -11.69761 -11.59266 -11.49585 -10.61207 -10.34614 -9.62325 -9.50356 -8.46484 -6.09475 -0.28155 0.08701 0.82764 1.03283 1.21095 1.26580 1.30927 1.33015 1.43879 1.70333 1.75252 2.19521 2.79844 3.07932 3.30288 3.61378 3.86682 3.93656 4.08460 4.12299 4.18837 4.30512 4.49641 4.75984 4.78345 4.92782 5.04775 5.17552 5.26270 5.34537 5.47243 5.85004 6.44511 6.58133 6.76984 7.25243 7.76792 8.70016 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.028194 B = 0.002519 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.878678 B =11113.582214 C =11770.591622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.004 4.004 3 H 0.158 0.842 4 C 0.458 3.542 5 O -0.518 6.518 6 O -0.338 6.338 7 C 0.067 3.933 8 C 0.449 3.551 9 O -0.606 6.606 10 N -0.577 5.577 11 C -0.332 4.332 12 H 0.062 0.938 13 C -0.008 4.008 14 N -0.925 5.925 15 Si 0.960 3.040 16 H -0.255 1.255 17 H -0.272 1.272 18 H -0.232 1.232 19 C -0.174 4.174 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.164 4.164 23 Cl -0.016 7.016 24 S 0.152 5.848 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.392 0.608 31 H 0.282 0.718 32 H 0.179 0.821 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -5.689 -28.108 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 H 0.175 0.825 4 C 0.301 3.699 5 O -0.406 6.406 6 O -0.253 6.253 7 C -0.010 4.010 8 C 0.236 3.764 9 O -0.491 6.491 10 N -0.219 5.219 11 C -0.461 4.461 12 H 0.080 0.920 13 C -0.208 4.208 14 N -0.564 5.564 15 Si 0.780 3.220 16 H -0.179 1.179 17 H -0.197 1.197 18 H -0.156 1.156 19 C -0.292 4.292 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.308 4.308 23 Cl 0.013 6.987 24 S 0.417 5.583 25 H 0.122 0.878 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.229 0.771 31 H 0.092 0.908 32 H 0.196 0.804 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.033 -6.633 -27.343 28.299 hybrid contribution 1.332 0.121 0.091 1.340 sum 4.365 -6.512 -27.253 28.358 Atomic orbital electron populations 1.21901 0.89555 1.03383 1.05339 1.19571 0.99222 1.00675 0.83037 0.82513 1.24256 0.77395 0.83075 0.85163 1.90686 1.36152 1.26472 1.87326 1.86552 1.69188 1.55031 1.14526 1.22599 1.01077 0.95831 0.81494 1.20156 0.84721 0.86559 0.84949 1.90582 1.42042 1.29091 1.87377 1.41826 1.47470 1.27990 1.04575 1.18998 1.31621 1.12043 0.83456 0.92003 1.26076 0.98901 1.02186 0.93596 1.69776 1.45651 1.42395 0.98621 0.85432 0.78906 0.77583 0.80098 1.17921 1.19702 1.15575 1.24072 1.07106 0.97082 1.00976 1.20288 0.98102 1.02930 0.92926 1.20443 1.02057 0.90833 1.01599 1.25493 1.10746 0.95455 0.99119 1.98365 1.95444 1.48506 1.56389 1.84656 1.49693 1.10265 1.13699 0.87846 0.92529 0.90563 0.86855 0.86617 0.77145 0.90819 0.80391 0.81096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.05 71.98 0.65 -1.72 16 2 C 0.00 -0.08 3.20 -12.29 -0.04 -0.12 16 3 H 0.16 2.05 8.08 -2.39 -0.02 2.04 16 4 C 0.46 12.17 7.22 71.23 0.51 12.69 16 5 O -0.52 -15.43 14.98 21.97 0.33 -15.10 16 6 O -0.34 -10.94 9.66 -45.09 -0.44 -11.38 16 7 C 0.07 2.20 5.94 71.24 0.42 2.62 16 8 C 0.45 20.32 7.86 87.66 0.69 21.01 16 9 O -0.61 -33.62 16.08 15.72 0.25 -33.36 16 10 N -0.58 -26.77 5.09 -306.98 -1.56 -28.33 16 11 C -0.33 -19.03 10.16 84.04 0.85 -18.17 16 12 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 13 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 14 N -0.92 -54.28 13.96 21.66 0.30 -53.98 16 15 Si 0.96 37.68 27.74 68.60 1.90 39.58 16 16 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 17 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 18 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 19 C -0.17 -3.13 4.61 24.58 0.11 -3.02 16 20 C -0.11 -1.58 10.01 21.22 0.21 -1.36 16 21 C -0.12 -1.70 10.13 21.25 0.22 -1.49 16 22 C -0.16 -2.95 7.10 66.74 0.47 -2.48 16 23 Cl -0.02 -0.26 29.29 -2.72 -0.08 -0.34 16 24 S 0.15 3.09 22.17 -56.49 -1.25 1.84 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 0.99 8.01 -2.39 -0.02 0.97 16 27 H 0.08 1.45 8.11 -2.38 -0.02 1.43 16 28 H 0.11 3.18 8.13 -2.38 -0.02 3.16 16 29 H 0.12 3.20 8.13 -2.39 -0.02 3.18 16 30 H 0.39 14.98 5.76 -92.71 -0.53 14.45 16 31 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -75.48 326.68 4.61 -70.87 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.57 Total: 22.18 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 4.58 Total: 8.02 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.26 Total: -82.31 kcal Atomic # 8 Polarization: -59.99 SS G_CDS: 0.15 Total: -59.85 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 1.90 Total: 39.58 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.25 Total: 1.84 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -75.48 4.61 -70.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750552221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.470 kcal (2) G-P(sol) polarization free energy of solvation -75.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds