Wall clock time and date at job start Tue Mar 31 2020 12:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86809 * 119.99549 * 2 1 4 4 H 1.48499 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47067 * 300.00195 * 3 2 1 6 6 H 1.48496 * 109.46898 * 60.00550 * 3 2 1 7 7 C 1.38645 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00399 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00520 * 185.03029 * 9 7 2 11 11 C 1.38957 * 120.02821 * 354.34003 * 10 9 7 12 12 C 1.38128 * 120.07005 * 179.77346 * 11 10 9 13 13 C 1.38196 * 120.14198 * 0.50763 * 12 11 10 14 14 C 1.38934 * 120.06654 * 359.74393 * 13 12 11 15 15 N 1.39862 * 120.03956 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00130 * 215.11547 * 15 14 13 17 17 O 1.21622 * 119.99921 * 355.49319 * 16 15 14 18 18 C 1.47343 * 119.99788 * 175.49544 * 16 15 14 19 19 C 1.36783 * 122.90019 * 0.02562 * 18 16 15 20 20 S 1.70554 * 110.75987 * 179.97438 * 19 18 16 21 21 C 1.75691 * 91.91718 * 359.97438 * 20 19 18 22 22 C 1.41444 * 125.13073 * 179.97438 * 21 20 19 23 23 O 1.21423 * 120.00419 * 359.97438 * 22 21 20 24 24 C 1.36402 * 109.73491 * 359.77502 * 21 20 19 25 25 C 1.38731 * 120.03697 * 174.62223 * 10 9 7 26 26 H 0.96994 * 120.00890 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.96666 * 0.02562 * 11 10 9 28 28 H 1.08009 * 119.92767 * 180.23377 * 12 11 10 29 29 H 1.08003 * 119.96784 * 179.72732 * 13 12 11 30 30 H 0.97000 * 119.99361 * 35.12076 * 15 14 13 31 31 H 1.08003 * 124.61739 * 359.97438 * 19 18 16 32 32 H 1.08001 * 119.99970 * 179.97438 * 22 21 20 33 33 H 1.08003 * 123.30699 * 180.20749 * 24 21 20 34 34 H 1.07996 * 120.06823 * 359.94958 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8906 2.3966 -1.2125 6 1 1.8907 2.3964 1.2126 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3684 -0.0005 10 6 2.0702 -3.5045 0.1050 11 6 3.4582 -3.4386 0.0882 12 6 4.2073 -4.5937 0.2003 13 6 3.5796 -5.8191 0.3187 14 6 2.1922 -5.8923 0.3308 15 7 1.5576 -7.1328 0.4513 16 6 0.3985 -7.3625 -0.1970 17 8 -0.1378 -6.4662 -0.8200 18 6 -0.2189 -8.6996 -0.1508 19 6 0.3322 -9.7493 0.5315 20 16 -0.6362 -11.1449 0.3785 21 6 -1.8044 -10.2964 -0.6226 22 6 -2.9767 -10.8692 -1.1685 23 8 -3.2381 -12.0359 -0.9563 24 6 -1.4124 -9.0007 -0.7901 25 6 1.4369 -4.7331 0.2237 26 1 -0.4851 0.8399 0.0004 27 1 3.9517 -2.4829 -0.0083 28 1 5.2860 -4.5394 0.1908 29 1 4.1681 -6.7209 0.4017 30 1 1.9516 -7.8277 1.0015 31 1 1.2548 -9.7008 1.0909 32 1 -3.6395 -10.2690 -1.7742 33 1 -1.9744 -8.2809 -1.3669 34 1 0.3584 -4.7872 0.2332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754991427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:19 Heat of formation + Delta-G solvation = -25.004875 kcal Electronic energy + Delta-G solvation = -22085.552921 eV Core-core repulsion = 18462.802496 eV Total energy + Delta-G solvation = -3622.750425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54699 -39.47007 -38.77488 -37.38746 -36.38438 -34.24813 -32.26993 -31.19942 -29.48463 -28.44041 -26.08562 -25.36869 -24.31889 -22.24087 -21.44572 -20.90238 -19.54845 -18.56757 -17.86556 -17.43936 -17.05142 -16.21319 -15.59396 -15.31133 -15.09829 -15.02449 -14.73107 -14.45615 -14.23036 -13.83063 -13.58544 -13.37476 -13.12770 -13.00814 -12.70971 -12.54577 -11.77584 -11.63038 -11.55300 -11.22699 -11.04344 -10.83177 -10.45353 -10.39039 -9.90976 -9.80388 -9.41449 -9.22837 -9.06203 -8.84072 -7.75899 -7.22346 -6.43800 -4.02990 -0.24872 0.96119 1.15279 1.37900 2.06252 2.30623 2.44369 3.07164 3.12591 3.14617 3.19988 3.28707 3.96777 4.11359 4.42951 4.51338 4.66092 4.74381 5.02611 5.10369 5.17615 5.30846 5.56023 5.58345 5.71200 5.77838 6.04991 6.16333 6.34604 6.62507 6.81558 6.98682 6.99506 7.04731 7.31939 7.44350 7.58963 7.74269 8.00896 8.21536 9.01133 9.71933 10.74069 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.024336 B = 0.002580 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.268879 B =10849.869064 C =11870.029978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.166 3.834 11 C -0.243 4.243 12 C -0.058 4.058 13 C -0.235 4.235 14 C 0.173 3.827 15 N -0.662 5.662 16 C 0.568 3.432 17 O -0.501 6.501 18 C -0.160 4.160 19 C -0.204 4.204 20 S 0.293 5.707 21 C -0.339 4.339 22 C 0.412 3.588 23 O -0.471 6.471 24 C -0.002 4.002 25 C -0.185 4.185 26 H 0.270 0.730 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.403 0.597 31 H 0.178 0.822 32 H 0.117 0.883 33 H 0.168 0.832 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.612 -20.208 1.512 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.112 3.888 11 C -0.263 4.263 12 C -0.077 4.077 13 C -0.256 4.256 14 C 0.080 3.920 15 N -0.306 5.306 16 C 0.353 3.647 17 O -0.376 6.376 18 C -0.177 4.177 19 C -0.344 4.344 20 S 0.562 5.438 21 C -0.457 4.457 22 C 0.271 3.729 23 O -0.346 6.346 24 C -0.034 4.034 25 C -0.207 4.207 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.239 0.761 31 H 0.195 0.805 32 H 0.133 0.867 33 H 0.185 0.815 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.725 -21.503 1.689 21.582 hybrid contribution 0.897 2.169 -0.202 2.356 sum 1.622 -19.335 1.486 19.459 Atomic orbital electron populations 1.70056 1.05972 1.27588 1.45804 1.25308 0.95842 0.98858 0.96551 0.85640 0.79117 0.80354 0.78249 1.19080 1.20136 1.20146 1.21398 0.91858 0.80753 1.52785 0.88908 1.83993 1.34275 1.11363 1.77916 1.19137 0.90007 0.87842 0.91862 1.21200 0.93758 0.99153 1.12210 1.20503 0.98426 0.91691 0.97117 1.20257 0.91774 0.97748 1.15824 1.17140 0.90899 0.83222 1.00764 1.43152 1.23712 1.14863 1.48923 1.17678 0.80751 0.86884 0.79387 1.90901 1.61091 1.44328 1.41257 1.19151 0.98476 0.94962 1.05147 1.26420 1.05587 0.98844 1.03514 1.83280 1.10547 1.08534 1.41438 1.24741 1.06621 0.99852 1.14496 1.21929 0.84019 0.88670 0.78258 1.90606 1.72832 1.18988 1.52203 1.20938 0.93452 0.94421 0.94629 1.20175 1.00642 0.88756 1.11098 0.92033 0.85393 0.86984 0.87401 0.76133 0.80498 0.86652 0.81506 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.39 -11.03 9.49 30.88 0.29 -10.73 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 9 O -0.17 -5.04 9.75 0.06 0.00 -5.04 16 10 C 0.17 4.13 6.64 -39.13 -0.26 3.87 16 11 C -0.24 -5.27 9.17 -39.36 -0.36 -5.63 16 12 C -0.06 -1.04 10.03 -39.64 -0.40 -1.44 16 13 C -0.23 -3.88 9.96 -39.34 -0.39 -4.27 16 14 C 0.17 3.12 6.29 -83.74 -0.53 2.60 16 15 N -0.66 -9.15 5.30 -10.87 -0.06 -9.21 16 16 C 0.57 8.43 7.63 -12.56 -0.10 8.34 16 17 O -0.50 -9.78 14.12 5.26 0.07 -9.70 16 18 C -0.16 -1.72 5.81 -106.55 -0.62 -2.34 16 19 C -0.20 -1.53 10.40 30.21 0.31 -1.22 16 20 S 0.29 2.13 22.74 -107.50 -2.44 -0.31 16 21 C -0.34 -2.92 6.22 -39.02 -0.24 -3.16 16 22 C 0.41 3.36 11.36 31.95 0.36 3.73 16 23 O -0.47 -5.42 17.63 5.43 0.10 -5.33 16 24 C 0.00 -0.02 9.77 -40.07 -0.39 -0.41 16 25 C -0.19 -4.18 8.64 -39.20 -0.34 -4.52 16 26 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.13 2.75 5.63 -52.49 -0.30 2.45 16 28 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.40 3.78 7.28 -40.82 -0.30 3.49 16 31 H 0.18 0.80 6.98 -52.48 -0.37 0.43 16 32 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.17 1.51 7.98 -52.48 -0.42 1.09 16 34 H 0.13 3.24 6.23 -52.49 -0.33 2.91 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -35.65 322.77 -6.86 -42.51 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -2.38 Total: 5.64 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.75 Total: -14.20 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.70 Total: -33.95 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: 0.17 Total: -20.07 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.44 Total: -0.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.65 -6.86 -42.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754991427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.508 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds