Wall clock time and date at job start Tue Mar 31 2020 12:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86809 * 119.99549 * 2 1 4 4 H 1.48499 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47067 * 300.00195 * 3 2 1 6 6 H 1.48496 * 109.46898 * 60.00550 * 3 2 1 7 7 C 1.38645 * 120.00491 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00399 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00520 * 185.03029 * 9 7 2 11 11 C 1.38957 * 120.02821 * 354.34003 * 10 9 7 12 12 C 1.38128 * 120.07005 * 179.77346 * 11 10 9 13 13 C 1.38196 * 120.14198 * 0.50763 * 12 11 10 14 14 C 1.38934 * 120.06654 * 359.74393 * 13 12 11 15 15 N 1.39862 * 120.03956 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00130 * 215.11547 * 15 14 13 17 17 O 1.21622 * 119.99921 * 355.49319 * 16 15 14 18 18 C 1.47343 * 119.99788 * 175.49544 * 16 15 14 19 19 C 1.36783 * 122.90019 * 0.02562 * 18 16 15 20 20 S 1.70554 * 110.75987 * 179.97438 * 19 18 16 21 21 C 1.75691 * 91.91718 * 359.97438 * 20 19 18 22 22 C 1.41444 * 125.13073 * 179.97438 * 21 20 19 23 23 O 1.21423 * 120.00419 * 359.97438 * 22 21 20 24 24 C 1.36402 * 109.73491 * 359.77502 * 21 20 19 25 25 C 1.38731 * 120.03697 * 174.62223 * 10 9 7 26 26 H 0.96994 * 120.00890 * 359.97438 * 1 2 3 27 27 H 1.07994 * 119.96666 * 0.02562 * 11 10 9 28 28 H 1.08009 * 119.92767 * 180.23377 * 12 11 10 29 29 H 1.08003 * 119.96784 * 179.72732 * 13 12 11 30 30 H 0.97000 * 119.99361 * 35.12076 * 15 14 13 31 31 H 1.08003 * 124.61739 * 359.97438 * 19 18 16 32 32 H 1.08001 * 119.99970 * 179.97438 * 22 21 20 33 33 H 1.08003 * 123.30699 * 180.20749 * 24 21 20 34 34 H 1.07996 * 120.06823 * 359.94958 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8906 2.3966 -1.2125 6 1 1.8907 2.3964 1.2126 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3684 -0.0005 10 6 2.0702 -3.5045 0.1050 11 6 3.4582 -3.4386 0.0882 12 6 4.2073 -4.5937 0.2003 13 6 3.5796 -5.8191 0.3187 14 6 2.1922 -5.8923 0.3308 15 7 1.5576 -7.1328 0.4513 16 6 0.3985 -7.3625 -0.1970 17 8 -0.1378 -6.4662 -0.8200 18 6 -0.2189 -8.6996 -0.1508 19 6 0.3322 -9.7493 0.5315 20 16 -0.6362 -11.1449 0.3785 21 6 -1.8044 -10.2964 -0.6226 22 6 -2.9767 -10.8692 -1.1685 23 8 -3.2381 -12.0359 -0.9563 24 6 -1.4124 -9.0007 -0.7901 25 6 1.4369 -4.7331 0.2237 26 1 -0.4851 0.8399 0.0004 27 1 3.9517 -2.4829 -0.0083 28 1 5.2860 -4.5394 0.1908 29 1 4.1681 -6.7209 0.4017 30 1 1.9516 -7.8277 1.0015 31 1 1.2548 -9.7008 1.0909 32 1 -3.6395 -10.2690 -1.7742 33 1 -1.9744 -8.2809 -1.3669 34 1 0.3584 -4.7872 0.2332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754991427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:18 Heat of formation + Delta-G solvation = -50.689582 kcal Electronic energy + Delta-G solvation = -22086.666694 eV Core-core repulsion = 18462.802496 eV Total energy + Delta-G solvation = -3623.864198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77456 -40.54479 -40.10627 -38.57315 -37.76466 -35.65636 -34.26168 -32.09376 -31.06619 -29.91048 -27.36486 -26.81247 -25.41160 -23.62008 -22.94107 -21.91965 -20.57646 -20.07294 -19.20555 -18.62156 -18.23568 -17.20963 -16.88072 -16.76575 -16.54578 -16.07543 -15.95193 -15.71522 -15.53140 -15.44074 -15.12612 -14.50734 -14.27579 -13.97223 -13.89722 -13.70358 -13.57528 -13.18121 -12.96971 -12.69736 -12.39472 -12.26396 -12.08805 -11.47855 -11.34503 -11.07758 -10.82487 -10.76391 -10.10557 -9.77200 -9.34547 -8.88286 -8.46265 -6.15731 -0.91778 0.17770 0.32758 0.61991 0.70946 0.72013 1.35210 1.44370 1.54701 1.67964 1.93532 2.19085 2.22458 2.83865 3.15536 3.42498 3.54074 3.78072 3.88895 4.03749 4.14698 4.36809 4.39105 4.41566 4.49990 4.67813 4.74143 4.86537 4.95942 5.05945 5.12162 5.40377 5.43726 5.63817 5.74372 6.03683 6.19233 6.34207 6.39460 6.97592 7.08102 7.80277 8.77784 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.024336 B = 0.002580 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.268879 B =10849.869064 C =11870.029978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.027 4.027 3 Si 1.023 2.977 4 H -0.247 1.247 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.107 0.893 9 O -0.235 6.235 10 C 0.125 3.875 11 C -0.254 4.254 12 C -0.049 4.049 13 C -0.201 4.201 14 C 0.182 3.818 15 N -0.647 5.647 16 C 0.567 3.433 17 O -0.560 6.560 18 C -0.190 4.190 19 C -0.178 4.178 20 S 0.344 5.656 21 C -0.354 4.354 22 C 0.417 3.583 23 O -0.506 6.506 24 C -0.008 4.008 25 C -0.212 4.212 26 H 0.272 0.728 27 H 0.123 0.877 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.429 0.571 31 H 0.214 0.786 32 H 0.150 0.850 33 H 0.161 0.839 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -23.245 2.390 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.224 4.224 3 Si 0.842 3.158 4 H -0.170 1.170 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.124 0.876 9 O -0.142 6.142 10 C 0.074 3.926 11 C -0.274 4.274 12 C -0.068 4.068 13 C -0.222 4.222 14 C 0.087 3.913 15 N -0.294 5.294 16 C 0.355 3.645 17 O -0.438 6.438 18 C -0.207 4.207 19 C -0.318 4.318 20 S 0.614 5.386 21 C -0.472 4.472 22 C 0.279 3.721 23 O -0.384 6.384 24 C -0.040 4.040 25 C -0.234 4.234 26 H 0.081 0.919 27 H 0.141 0.859 28 H 0.178 0.822 29 H 0.184 0.816 30 H 0.270 0.730 31 H 0.231 0.769 32 H 0.166 0.834 33 H 0.179 0.821 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.305 -24.635 2.592 25.142 hybrid contribution -0.100 2.641 -0.425 2.677 sum 4.205 -21.994 2.167 22.497 Atomic orbital electron populations 1.70221 1.08258 1.28730 1.49037 1.26698 0.96862 1.02995 0.95869 0.84473 0.78376 0.74479 0.78472 1.16979 1.19509 1.19336 1.21947 0.92696 0.81232 1.52973 0.87577 1.83960 1.36233 1.12724 1.81265 1.19688 0.91736 0.87401 0.93734 1.21349 0.92484 1.00866 1.12666 1.21048 1.00605 0.90421 0.94683 1.20905 0.90903 0.99495 1.10866 1.17284 0.91805 0.83403 0.98773 1.43028 1.23461 1.13861 1.49034 1.18313 0.80264 0.87842 0.78037 1.90893 1.62575 1.46583 1.43786 1.18803 0.99688 0.93636 1.08539 1.26818 1.06130 0.97762 1.01122 1.83248 1.08917 1.07068 1.39394 1.24852 1.07479 0.99644 1.15261 1.22414 0.83964 0.88168 0.77524 1.90599 1.73614 1.20475 1.53744 1.20926 0.93445 0.94879 0.94712 1.20210 0.99703 0.90190 1.13285 0.91895 0.85929 0.82195 0.81612 0.73036 0.76881 0.83429 0.82131 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.80 13.67 21.61 0.30 -58.51 16 2 C -0.03 -1.60 5.49 84.83 0.47 -1.13 16 3 Si 1.02 43.59 29.55 68.60 2.03 45.61 16 4 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.41 -24.67 9.49 67.92 0.64 -24.03 16 8 H 0.11 5.72 5.20 -2.91 -0.02 5.71 16 9 O -0.24 -14.94 9.75 -22.71 -0.22 -15.16 16 10 C 0.13 6.58 6.64 22.56 0.15 6.73 16 11 C -0.25 -10.96 9.17 22.42 0.21 -10.76 16 12 C -0.05 -1.55 10.03 22.23 0.22 -1.33 16 13 C -0.20 -5.63 9.96 22.43 0.22 -5.41 16 14 C 0.18 6.26 6.29 38.15 0.24 6.50 16 15 N -0.65 -16.28 5.30 -306.56 -1.62 -17.90 16 16 C 0.57 16.66 7.63 86.64 0.66 17.33 16 17 O -0.56 -23.18 14.12 -4.10 -0.06 -23.24 16 18 C -0.19 -3.78 5.81 -21.11 -0.12 -3.90 16 19 C -0.18 -1.99 10.40 67.48 0.70 -1.29 16 20 S 0.34 3.88 22.74 -56.49 -1.28 2.59 16 21 C -0.35 -5.52 6.22 22.63 0.14 -5.38 16 22 C 0.42 6.28 11.36 68.61 0.78 7.05 16 23 O -0.51 -11.08 17.63 -3.47 -0.06 -11.14 16 24 C -0.01 -0.14 9.77 21.95 0.21 0.07 16 25 C -0.21 -10.06 8.64 22.51 0.19 -9.86 16 26 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 27 H 0.12 5.32 5.63 -2.91 -0.02 5.31 16 28 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 30 H 0.43 5.99 7.28 -92.71 -0.68 5.31 16 31 H 0.21 0.65 6.98 -2.91 -0.02 0.63 16 32 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 33 H 0.16 3.10 7.98 -2.91 -0.02 3.08 16 34 H 0.10 5.43 6.23 -2.91 -0.02 5.41 16 Total: -1.00 -88.85 322.77 4.31 -84.55 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.51 Total: 18.61 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 4.72 Total: -25.40 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -1.33 Total: -76.41 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.34 Total: -49.54 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.28 Total: 2.59 kcal Total: -88.85 4.31 -84.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754991427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.858 kcal (2) G-P(sol) polarization free energy of solvation -88.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds