Wall clock time and date at job start Tue Mar 31 2020 11:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32001 * 119.44867 * 2 1 4 4 C 1.31638 * 121.94499 * 180.02562 * 3 2 1 5 5 C 1.39616 * 120.59237 * 359.97438 * 4 3 2 6 6 C 1.47653 * 120.56951 * 179.97438 * 5 4 3 7 7 O 1.21483 * 119.99774 * 179.97438 * 6 5 4 8 8 O 1.34718 * 120.00011 * 0.02562 * 6 5 4 9 9 C 1.45202 * 116.99571 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46867 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47055 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00290 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00258 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99506 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00308 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46785 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47025 * 119.99441 * 16 14 12 19 19 H 1.48498 * 109.46692 * 239.99413 * 16 14 12 20 20 C 1.40176 * 118.85756 * 0.25448 * 5 4 3 21 21 Cl 1.73600 * 120.88373 * 179.74690 * 20 5 4 22 22 C 1.38317 * 119.45021 * 180.02562 * 2 1 3 23 23 Cl 1.73601 * 120.36475 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.46880 * 89.99795 * 1 2 3 25 25 H 1.08992 * 109.47503 * 210.00066 * 1 2 3 26 26 H 1.09003 * 109.46994 * 330.00522 * 1 2 3 27 27 H 1.08001 * 119.70306 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46860 * 60.00397 * 9 8 6 29 29 H 1.08993 * 109.47426 * 299.99759 * 9 8 6 30 30 H 1.09001 * 109.46801 * 300.00397 * 10 9 8 31 31 H 1.09001 * 109.46998 * 59.99993 * 10 9 8 32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 34 34 H 0.96999 * 119.99910 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1560 1.1495 0.0000 4 6 3.4711 1.2068 -0.0005 5 6 4.2333 0.0371 -0.0005 6 6 5.7084 0.1020 -0.0016 7 8 6.3615 -0.9224 -0.0012 8 8 6.3301 1.2971 -0.0021 9 6 7.7821 1.2848 -0.0027 10 6 8.3042 2.7230 -0.0038 11 6 9.8341 2.7102 -0.0051 12 6 10.3484 4.1267 -0.0056 13 1 9.6536 4.9534 -0.0055 14 6 11.7060 4.3673 -0.0072 15 7 12.5522 3.3604 -0.0078 16 14 12.3435 6.1231 -0.0086 17 1 11.1964 7.0661 -0.0082 18 1 13.1717 6.3500 1.2030 19 1 13.1692 6.3489 -1.2220 20 6 3.5741 -1.2000 -0.0054 21 17 4.4698 -2.6870 -0.0123 22 6 2.1871 -1.2044 -0.0005 23 17 1.3142 -2.7051 -0.0019 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 3.9649 2.1673 -0.0001 28 1 8.1407 0.7678 -0.8927 29 1 8.1414 0.7682 0.8872 30 1 7.9448 3.2393 -0.8940 31 1 7.9455 3.2405 0.8859 32 1 10.1938 2.1937 0.8849 33 1 10.1924 2.1928 -0.8951 34 1 13.5073 3.5296 -0.0085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758506675.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:02 Heat of formation + Delta-G solvation = -89.933811 kcal Electronic energy + Delta-G solvation = -20678.565611 eV Core-core repulsion = 17048.523099 eV Total energy + Delta-G solvation = -3630.042511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.15761 -41.00626 -38.23784 -37.98650 -37.69609 -35.93877 -34.50220 -33.61657 -33.27228 -29.93177 -28.72104 -25.61412 -25.21403 -24.24023 -22.36643 -22.14611 -19.54367 -18.80813 -18.46733 -17.78810 -17.65932 -17.40631 -16.47679 -16.36137 -16.33835 -15.55943 -15.24112 -14.81750 -14.15075 -14.13570 -13.92283 -13.78954 -13.78585 -13.47697 -13.26968 -12.98320 -12.84680 -12.82513 -12.49530 -12.36464 -12.21277 -12.09486 -11.65106 -11.44405 -11.41515 -11.22988 -10.97420 -10.84229 -10.56814 -10.24120 -8.20966 -6.31963 -1.01499 -0.57481 0.36519 0.74294 1.18525 1.37046 1.42532 1.43575 1.56501 2.19350 2.42086 2.83422 3.09685 3.13461 3.22340 3.41637 3.79123 3.85943 4.02539 4.05866 4.27240 4.43121 4.67215 4.69742 4.82479 4.83860 4.88503 5.09205 5.20963 5.29641 5.51559 5.66236 5.82148 6.20157 6.33880 6.49581 6.84724 7.37695 8.91450 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.029636 B = 0.002412 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.576224 B =11607.762998 C =12521.280674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.194 3.806 3 N -0.479 5.479 4 C 0.195 3.805 5 C -0.183 4.183 6 C 0.507 3.493 7 O -0.509 6.509 8 O -0.344 6.344 9 C 0.081 3.919 10 C -0.094 4.094 11 C 0.025 3.975 12 C -0.540 4.540 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.259 1.259 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.056 3.944 21 Cl -0.003 7.003 22 C -0.109 4.109 23 Cl -0.009 7.009 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.206 0.794 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.070 0.930 32 H -0.003 1.003 33 H -0.003 1.003 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.670 -9.513 -0.046 30.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.057 3.943 3 N -0.189 5.189 4 C 0.037 3.963 5 C -0.188 4.188 6 C 0.351 3.649 7 O -0.398 6.398 8 O -0.260 6.260 9 C 0.008 3.992 10 C -0.131 4.131 11 C -0.012 4.012 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.182 1.182 18 H -0.205 1.205 19 H -0.205 1.205 20 C 0.020 3.980 21 Cl 0.027 6.973 22 C -0.139 4.139 23 Cl 0.020 6.980 24 H 0.130 0.870 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.223 0.777 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.746 -9.354 -0.045 30.230 hybrid contribution 1.822 -0.713 -0.006 1.956 sum -26.924 -10.068 -0.051 28.745 Atomic orbital electron populations 1.21141 0.84109 1.06067 1.05875 1.22180 0.99799 0.84966 0.87387 1.67971 1.09283 1.27257 1.14385 1.23737 0.88571 0.98213 0.85784 1.19945 0.91198 0.94053 1.13567 1.20822 0.88504 0.82140 0.73434 1.90925 1.67585 1.35756 1.45507 1.86475 1.24415 1.31664 1.83488 1.23231 0.73912 0.99859 1.02236 1.21469 0.96072 0.92674 1.02895 1.18942 0.90478 0.96338 0.95490 1.21661 0.92221 0.93393 1.50482 0.91528 1.26005 0.97479 1.01799 0.94724 1.70107 1.02719 1.32978 1.51684 0.85358 0.78499 0.79300 0.77656 1.18233 1.20527 1.20537 1.21496 0.91519 0.89238 0.95726 1.98470 1.74161 1.29410 1.95244 1.21723 0.89980 0.91557 1.10646 1.98405 1.74350 1.28660 1.96590 0.87039 0.88339 0.87932 0.77727 0.91555 0.91546 0.91141 0.91135 0.98488 0.98486 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.77 71.24 0.70 -0.19 16 2 C 0.19 2.94 6.78 42.55 0.29 3.23 16 3 N -0.48 -8.50 10.25 -182.76 -1.87 -10.37 16 4 C 0.20 3.72 10.79 85.05 0.92 4.63 16 5 C -0.18 -4.31 5.89 -19.99 -0.12 -4.42 16 6 C 0.51 14.93 7.90 70.31 0.56 15.49 16 7 O -0.51 -17.50 13.94 19.89 0.28 -17.22 16 8 O -0.34 -10.37 9.50 -56.27 -0.53 -10.90 16 9 C 0.08 2.82 5.48 71.98 0.39 3.22 16 10 C -0.09 -3.67 5.53 30.60 0.17 -3.50 16 11 C 0.02 1.27 4.97 29.85 0.15 1.42 16 12 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 13 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 14 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 15 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 16 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 17 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 C 0.06 1.25 6.41 22.85 0.15 1.40 16 21 Cl 0.00 -0.07 25.36 -2.72 -0.07 -0.14 16 22 C -0.11 -1.92 6.33 22.40 0.14 -1.78 16 23 Cl -0.01 -0.13 26.41 -2.72 -0.07 -0.20 16 24 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.10 0.56 6.87 -2.39 -0.02 0.55 16 26 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.21 3.19 7.62 -2.91 -0.02 3.17 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -65.99 329.70 5.21 -60.78 By element: Atomic # 1 Polarization: -2.60 SS G_CDS: 1.13 Total: -1.46 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 4.04 Total: -9.87 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -1.59 Total: -66.57 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.26 Total: -28.13 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.14 Total: -0.34 kcal Total: -65.99 5.21 -60.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758506675.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.150 kcal (2) G-P(sol) polarization free energy of solvation -65.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds