Wall clock time and date at job start Tue Mar 31 2020 11:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47433 * 274.98578 * 3 2 1 5 5 H 1.48500 * 109.47192 * 34.98895 * 3 2 1 6 6 H 1.48508 * 109.46705 * 154.98442 * 3 2 1 7 7 C 1.40045 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 186.14717 * 7 2 1 9 9 C 1.46378 * 119.99804 * 6.14730 * 7 2 1 10 10 O 1.21689 * 120.00565 * 353.94021 * 9 7 2 11 11 N 1.34783 * 119.99766 * 173.94284 * 9 7 2 12 12 C 1.46498 * 119.99949 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47027 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.47147 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.46719 * 305.00096 * 14 13 12 16 16 O 1.42906 * 109.47090 * 64.99492 * 14 13 12 17 17 C 1.50693 * 109.47157 * 184.99523 * 14 13 12 18 18 C 1.38266 * 119.98250 * 279.72656 * 17 14 13 19 19 C 1.38211 * 120.03855 * 179.72977 * 18 17 14 20 20 C 1.38339 * 119.99727 * 0.54191 * 19 18 17 21 21 Cl 1.73602 * 120.01753 * 179.75406 * 20 19 18 22 22 C 1.38443 * 119.96466 * 359.72692 * 20 19 18 23 23 Cl 1.73604 * 120.02246 * 180.02562 * 22 20 19 24 24 C 1.38206 * 119.98345 * 99.99807 * 17 14 13 25 25 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99758 * 359.97438 * 11 9 7 27 27 H 1.09002 * 109.46895 * 299.99322 * 12 11 9 28 28 H 1.09000 * 109.47316 * 59.99279 * 12 11 9 29 29 H 1.09002 * 109.47080 * 299.99087 * 13 12 11 30 30 H 1.08990 * 109.47687 * 59.99597 * 13 12 11 31 31 H 0.96701 * 113.99726 * 60.00253 * 16 14 13 32 32 H 1.08003 * 119.98033 * 359.97438 * 18 17 14 33 33 H 1.08000 * 119.99720 * 180.25440 * 19 18 17 34 34 H 1.08008 * 119.99385 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4120 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2349 -4.8990 -0.3972 13 6 2.2350 -6.0506 -0.5188 14 6 1.4766 -7.3718 -0.6612 15 1 0.7833 -7.4844 0.1723 16 8 0.7477 -7.3725 -1.8904 17 6 2.4566 -8.5165 -0.6577 18 6 3.1500 -8.8360 -1.8104 19 6 4.0533 -9.8821 -1.8070 20 6 4.2558 -10.6172 -0.6527 21 17 5.3856 -11.9353 -0.6496 22 6 3.5575 -10.3008 0.5000 23 17 3.8110 -11.2219 1.9496 24 6 2.6578 -9.2499 0.4963 25 1 -0.4850 0.8400 0.0004 26 1 2.9311 -3.6293 -0.2590 27 1 0.6073 -5.0546 0.4804 28 1 0.6098 -4.8644 -1.2894 29 1 2.8629 -5.8953 -1.3961 30 1 2.8597 -6.0851 0.3737 31 1 1.3024 -7.2757 -2.6766 32 1 2.9886 -8.2653 -2.7131 33 1 4.5976 -10.1284 -2.7067 34 1 2.1123 -9.0028 1.3951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760710923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:00 Heat of formation + Delta-G solvation = -90.341735 kcal Electronic energy + Delta-G solvation = -20647.457843 eV Core-core repulsion = 17017.397643 eV Total energy + Delta-G solvation = -3630.060200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28226 -38.02189 -37.15147 -36.89765 -36.47238 -33.82567 -32.44736 -31.97693 -31.21807 -29.81655 -26.62396 -25.03024 -23.46853 -22.29389 -21.27148 -19.67376 -18.20407 -17.25878 -16.70834 -16.50572 -15.83368 -15.29441 -15.19515 -14.90875 -14.50104 -14.28835 -14.06048 -13.62680 -13.59347 -12.83106 -12.55405 -12.32275 -12.25597 -12.10690 -12.02052 -11.51634 -11.39430 -11.27219 -11.14271 -11.11887 -10.92825 -10.66724 -10.48922 -10.30862 -10.18891 -9.38132 -9.01768 -8.85146 -7.61386 -7.50945 -6.19626 -4.64015 0.49433 0.65892 1.44918 1.81476 2.97207 3.13421 3.20578 3.24065 4.04929 4.13988 4.19034 4.24631 4.56014 4.59130 4.68189 4.78344 4.81276 5.06865 5.22260 5.31361 5.40249 5.51938 5.60063 5.65068 5.80166 5.85016 5.99981 6.14257 6.51798 6.61017 7.42560 7.43394 7.92272 8.09040 8.32565 9.02338 9.52862 10.59847 10.78430 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.025142 B = 0.002253 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.420200 B =12427.196865 C =12551.152527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.580 6.580 11 N -0.770 5.770 12 C 0.137 3.863 13 C -0.156 4.156 14 C 0.150 3.850 15 H 0.115 0.885 16 O -0.546 6.546 17 C -0.091 4.091 18 C -0.096 4.096 19 C -0.094 4.094 20 C -0.035 4.035 21 Cl -0.052 7.052 22 C -0.028 4.028 23 Cl -0.049 7.049 24 C -0.089 4.089 25 H 0.268 0.732 26 H 0.379 0.621 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.373 0.627 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.397 -22.483 -2.367 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.463 6.463 11 N -0.426 5.426 12 C 0.011 3.989 13 C -0.194 4.194 14 C 0.091 3.909 15 H 0.133 0.867 16 O -0.351 6.351 17 C -0.092 4.092 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.063 4.063 21 Cl -0.023 7.023 22 C -0.055 4.055 23 Cl -0.020 7.020 24 C -0.108 4.108 25 H 0.079 0.921 26 H 0.210 0.790 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.221 0.779 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.915 -22.658 -1.821 24.417 hybrid contribution 1.675 0.576 -0.186 1.781 sum 10.589 -22.082 -2.007 24.572 Atomic orbital electron populations 1.70029 1.07084 1.27261 1.35294 1.25709 0.94594 1.00304 0.92631 0.86367 0.80219 0.81536 0.78664 1.19813 1.20453 1.18915 1.20885 0.94058 0.89638 1.53842 0.91446 1.18229 0.87157 0.82413 0.76434 1.90604 1.14108 1.86437 1.55169 1.46153 1.08479 1.05890 1.82059 1.20780 0.93615 0.83385 1.01071 1.22504 0.99240 0.94320 1.03314 1.20853 0.91495 0.89861 0.88736 0.86688 1.86704 1.37241 1.95950 1.15212 1.20778 0.97808 0.97411 0.93204 1.20995 0.95106 0.96811 0.98506 1.21016 0.98633 0.94922 0.96757 1.20793 0.96597 0.94330 0.94544 1.98393 1.59307 1.45878 1.98726 1.20761 0.99934 0.96773 0.88065 1.98400 1.95797 1.72551 1.35240 1.20933 0.97194 0.93292 0.99392 0.92106 0.79010 0.93415 0.92559 0.91043 0.90473 0.77887 0.84353 0.83844 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.11 11.85 55.55 0.66 -22.45 16 2 C 0.09 2.44 5.49 -17.37 -0.10 2.34 16 3 Si 0.91 20.04 29.56 -169.99 -5.03 15.02 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.55 -15.41 9.53 -35.63 -0.34 -15.75 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.55 15.74 7.74 -12.98 -0.10 15.64 16 10 O -0.58 -18.94 15.05 5.20 0.08 -18.86 16 11 N -0.77 -16.76 5.55 -61.72 -0.34 -17.10 16 12 C 0.14 2.48 5.57 -4.04 -0.02 2.46 16 13 C -0.16 -1.87 4.99 -26.73 -0.13 -2.00 16 14 C 0.15 1.56 3.21 -27.88 -0.09 1.47 16 15 H 0.12 1.21 8.00 -51.93 -0.42 0.80 16 16 O -0.55 -6.12 12.72 -35.23 -0.45 -6.56 16 17 C -0.09 -0.82 4.97 -104.63 -0.52 -1.34 16 18 C -0.10 -0.73 9.32 -39.58 -0.37 -1.10 16 19 C -0.09 -0.72 9.83 -39.55 -0.39 -1.11 16 20 C -0.04 -0.32 6.32 -39.47 -0.25 -0.57 16 21 Cl -0.05 -0.46 27.96 -51.86 -1.45 -1.91 16 22 C -0.03 -0.26 6.32 -39.47 -0.25 -0.51 16 23 Cl -0.05 -0.46 27.96 -51.86 -1.45 -1.91 16 24 C -0.09 -0.81 9.45 -39.55 -0.37 -1.19 16 25 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 26 H 0.38 7.12 8.45 -40.82 -0.35 6.78 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.37 2.84 7.49 45.56 0.34 3.18 16 32 H 0.14 0.73 6.77 -52.48 -0.36 0.38 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.15 1.16 8.04 -52.48 -0.42 0.74 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -35.50 329.95 -8.78 -44.28 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -2.84 Total: 6.20 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.93 Total: -1.66 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.32 Total: -39.56 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.37 Total: -25.43 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.02 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -2.90 Total: -3.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.50 -8.78 -44.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760710923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.062 kcal (2) G-P(sol) polarization free energy of solvation -35.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds