Wall clock time and date at job start Tue Mar 31 2020 11:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86801 * 120.00264 * 2 1 4 4 H 1.48495 * 109.46869 * 274.98082 * 3 2 1 5 5 H 1.48501 * 109.46866 * 34.97971 * 3 2 1 6 6 H 1.48494 * 109.47056 * 154.98053 * 3 2 1 7 7 C 1.40046 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99724 * 186.15356 * 7 2 1 9 9 C 1.46371 * 120.00686 * 6.15534 * 7 2 1 10 10 O 1.21690 * 119.99599 * 353.93801 * 9 7 2 11 11 N 1.34772 * 120.00392 * 173.93833 * 9 7 2 12 12 C 1.46507 * 120.00151 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47087 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47013 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.46515 * 55.00301 * 14 13 12 16 16 O 1.42906 * 109.46931 * 295.00627 * 14 13 12 17 17 C 1.50693 * 109.47037 * 175.00215 * 14 13 12 18 18 C 1.38265 * 119.98361 * 264.99788 * 17 14 13 19 19 C 1.38203 * 120.04159 * 179.74673 * 18 17 14 20 20 C 1.38348 * 119.99579 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.01652 * 180.02562 * 20 19 18 22 22 C 1.38444 * 119.96684 * 0.02562 * 20 19 18 23 23 Cl 1.73597 * 120.01932 * 179.97438 * 22 20 19 24 24 C 1.38211 * 119.97736 * 84.72945 * 17 14 13 25 25 H 0.97004 * 119.99564 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00093 * 359.97438 * 11 9 7 27 27 H 1.09005 * 109.46692 * 59.99698 * 12 11 9 28 28 H 1.09000 * 109.46989 * 300.00202 * 12 11 9 29 29 H 1.09005 * 109.46574 * 60.00533 * 13 12 11 30 30 H 1.08992 * 109.47575 * 300.00453 * 13 12 11 31 31 H 0.96699 * 113.99882 * 299.99579 * 16 14 13 32 32 H 1.07997 * 119.97911 * 359.73367 * 18 17 14 33 33 H 1.07998 * 120.00307 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.00263 * 0.24729 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4120 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1008 9 6 1.2814 -2.4769 -0.1348 10 8 0.0645 -2.4828 -0.1368 11 7 1.9610 -3.6343 -0.2572 12 6 1.2348 -4.8995 -0.3921 13 6 2.2348 -6.0510 -0.5142 14 6 1.4764 -7.3724 -0.6544 15 1 0.7844 -7.3068 -1.4941 16 8 0.7456 -7.6319 0.5459 17 6 2.4566 -8.4908 -0.8975 18 6 2.7370 -8.8953 -2.1897 19 6 3.6397 -9.9174 -2.4142 20 6 4.2639 -10.5361 -1.3458 21 17 5.3985 -11.8195 -1.6273 22 6 3.9833 -10.1312 -0.0519 23 17 4.7652 -10.9070 1.2898 24 6 3.0791 -9.1080 0.1710 25 1 -0.4850 0.8401 -0.0004 26 1 2.9310 -3.6296 -0.2559 27 1 0.6091 -4.8659 -1.2840 28 1 0.6077 -5.0539 0.4860 29 1 2.8608 -6.0847 0.3776 30 1 2.8616 -5.8964 -1.3924 31 1 1.2990 -7.7030 1.3357 32 1 2.2501 -8.4124 -3.0239 33 1 3.8579 -10.2331 -3.4237 34 1 2.8600 -8.7914 1.1800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760710924.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:03 Heat of formation + Delta-G solvation = -90.157450 kcal Electronic energy + Delta-G solvation = -20673.622108 eV Core-core repulsion = 17043.569899 eV Total energy + Delta-G solvation = -3630.052209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28386 -38.00684 -37.14507 -36.89915 -36.50705 -33.82522 -32.43122 -31.84536 -31.35727 -29.80546 -26.62571 -25.04612 -23.40572 -22.28308 -21.31200 -19.67301 -18.23210 -17.25204 -16.71121 -16.50013 -15.81347 -15.31787 -15.15958 -14.88574 -14.51154 -14.30762 -14.05992 -13.63038 -13.58829 -12.84573 -12.53050 -12.29274 -12.25769 -12.12772 -12.03061 -11.47264 -11.42788 -11.27377 -11.14352 -11.11966 -10.92812 -10.66420 -10.50135 -10.30060 -10.18673 -9.38657 -9.00494 -8.85129 -7.61335 -7.50940 -6.19642 -4.63970 0.50232 0.65689 1.44780 1.81448 2.97623 3.13449 3.20619 3.24148 4.05094 4.15139 4.16347 4.22705 4.58055 4.60256 4.70740 4.77378 4.86942 5.00259 5.24895 5.28163 5.42271 5.52018 5.56648 5.68056 5.80458 5.84563 6.03476 6.12729 6.51510 6.61140 7.42517 7.43414 7.92318 8.09079 8.32589 9.02379 9.52910 10.59836 10.78451 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.002274 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.231490 B =12312.508768 C =12436.680010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.580 6.580 11 N -0.770 5.770 12 C 0.137 3.863 13 C -0.156 4.156 14 C 0.150 3.850 15 H 0.117 0.883 16 O -0.547 6.547 17 C -0.091 4.091 18 C -0.093 4.093 19 C -0.095 4.095 20 C -0.036 4.036 21 Cl -0.052 7.052 22 C -0.027 4.027 23 Cl -0.049 7.049 24 C -0.093 4.093 25 H 0.268 0.732 26 H 0.379 0.621 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.373 0.627 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.307 -22.422 -2.917 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.463 6.463 11 N -0.426 5.426 12 C 0.012 3.988 13 C -0.194 4.194 14 C 0.091 3.909 15 H 0.135 0.865 16 O -0.352 6.352 17 C -0.092 4.092 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.063 4.063 21 Cl -0.023 7.023 22 C -0.054 4.054 23 Cl -0.020 7.020 24 C -0.111 4.111 25 H 0.079 0.921 26 H 0.210 0.790 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.221 0.779 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.877 -22.494 -3.218 24.395 hybrid contribution 1.725 0.526 0.391 1.845 sum 10.602 -21.967 -2.827 24.555 Atomic orbital electron populations 1.70033 1.07084 1.27251 1.35299 1.25710 0.94596 1.00305 0.92630 0.86365 0.80222 0.81533 0.78661 1.19819 1.20449 1.18913 1.20886 0.94061 0.89635 1.53836 0.91450 1.18222 0.87158 0.82415 0.76434 1.90604 1.14105 1.86448 1.55171 1.46152 1.08485 1.05864 1.82077 1.20781 0.93609 0.83316 1.01133 1.22509 0.99246 0.94381 1.03273 1.20872 0.91420 0.89405 0.89241 0.86510 1.86694 1.37309 1.94202 1.17011 1.20799 0.97649 0.97617 0.93144 1.21126 0.97115 0.95978 0.96947 1.21060 0.96148 0.95908 0.98292 1.20798 0.97416 0.95088 0.93017 1.98393 1.59058 1.48460 1.96404 1.20717 0.99029 0.97901 0.87781 1.98400 1.79330 1.79855 1.44419 1.20775 0.95197 0.94753 1.00410 0.92112 0.79006 0.93400 0.92569 0.91083 0.90435 0.77850 0.83917 0.83812 0.84047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.11 11.85 55.55 0.66 -22.45 16 2 C 0.09 2.44 5.49 -17.37 -0.10 2.34 16 3 Si 0.91 20.05 29.56 -169.99 -5.03 15.03 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.55 -15.42 9.53 -35.63 -0.34 -15.76 16 8 H 0.07 1.73 7.86 -52.48 -0.41 1.32 16 9 C 0.55 15.74 7.74 -12.99 -0.10 15.64 16 10 O -0.58 -18.94 15.05 5.20 0.08 -18.86 16 11 N -0.77 -16.77 5.55 -61.72 -0.34 -17.12 16 12 C 0.14 2.48 5.57 -4.04 -0.02 2.46 16 13 C -0.16 -1.88 4.99 -26.73 -0.13 -2.01 16 14 C 0.15 1.56 3.21 -27.88 -0.09 1.47 16 15 H 0.12 1.19 8.05 -51.93 -0.42 0.77 16 16 O -0.55 -6.28 12.67 -35.23 -0.45 -6.72 16 17 C -0.09 -0.82 5.00 -104.63 -0.52 -1.34 16 18 C -0.09 -0.74 9.68 -39.58 -0.38 -1.12 16 19 C -0.10 -0.74 9.83 -39.55 -0.39 -1.13 16 20 C -0.04 -0.32 6.32 -39.46 -0.25 -0.57 16 21 Cl -0.05 -0.46 27.96 -51.86 -1.45 -1.91 16 22 C -0.03 -0.25 6.32 -39.46 -0.25 -0.50 16 23 Cl -0.05 -0.46 27.96 -51.86 -1.45 -1.91 16 24 C -0.09 -0.82 9.11 -39.55 -0.36 -1.18 16 25 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 26 H 0.38 7.14 8.45 -40.82 -0.35 6.80 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.13 7.82 -51.93 -0.41 0.72 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.37 3.08 7.39 45.56 0.34 3.41 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 1.03 6.62 -52.49 -0.35 0.68 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -35.44 329.76 -8.78 -44.23 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -2.84 Total: 6.44 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.94 Total: -1.70 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.32 Total: -39.57 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.37 Total: -25.58 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.03 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -2.90 Total: -3.81 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.44 -8.78 -44.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760710924.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.929 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds