Wall clock time and date at job start Tue Mar 31 2020 11:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86801 * 120.00264 * 2 1 4 4 H 1.48495 * 109.46869 * 274.98082 * 3 2 1 5 5 H 1.48501 * 109.46866 * 34.97971 * 3 2 1 6 6 H 1.48494 * 109.47056 * 154.98053 * 3 2 1 7 7 C 1.40046 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99724 * 186.15356 * 7 2 1 9 9 C 1.46371 * 120.00686 * 6.15534 * 7 2 1 10 10 O 1.21690 * 119.99599 * 353.93801 * 9 7 2 11 11 N 1.34772 * 120.00392 * 173.93833 * 9 7 2 12 12 C 1.46507 * 120.00151 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47087 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47013 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.46515 * 55.00301 * 14 13 12 16 16 O 1.42906 * 109.46931 * 295.00627 * 14 13 12 17 17 C 1.50693 * 109.47037 * 175.00215 * 14 13 12 18 18 C 1.38265 * 119.98361 * 264.99788 * 17 14 13 19 19 C 1.38203 * 120.04159 * 179.74673 * 18 17 14 20 20 C 1.38348 * 119.99579 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.01652 * 180.02562 * 20 19 18 22 22 C 1.38444 * 119.96684 * 0.02562 * 20 19 18 23 23 Cl 1.73597 * 120.01932 * 179.97438 * 22 20 19 24 24 C 1.38211 * 119.97736 * 84.72945 * 17 14 13 25 25 H 0.97004 * 119.99564 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00093 * 359.97438 * 11 9 7 27 27 H 1.09005 * 109.46692 * 59.99698 * 12 11 9 28 28 H 1.09000 * 109.46989 * 300.00202 * 12 11 9 29 29 H 1.09005 * 109.46574 * 60.00533 * 13 12 11 30 30 H 1.08992 * 109.47575 * 300.00453 * 13 12 11 31 31 H 0.96699 * 113.99882 * 299.99579 * 16 14 13 32 32 H 1.07997 * 119.97911 * 359.73367 * 18 17 14 33 33 H 1.07998 * 120.00307 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.00263 * 0.24729 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4120 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1008 9 6 1.2814 -2.4769 -0.1348 10 8 0.0645 -2.4828 -0.1368 11 7 1.9610 -3.6343 -0.2572 12 6 1.2348 -4.8995 -0.3921 13 6 2.2348 -6.0510 -0.5142 14 6 1.4764 -7.3724 -0.6544 15 1 0.7844 -7.3068 -1.4941 16 8 0.7456 -7.6319 0.5459 17 6 2.4566 -8.4908 -0.8975 18 6 2.7370 -8.8953 -2.1897 19 6 3.6397 -9.9174 -2.4142 20 6 4.2639 -10.5361 -1.3458 21 17 5.3985 -11.8195 -1.6273 22 6 3.9833 -10.1312 -0.0519 23 17 4.7652 -10.9070 1.2898 24 6 3.0791 -9.1080 0.1710 25 1 -0.4850 0.8401 -0.0004 26 1 2.9310 -3.6296 -0.2559 27 1 0.6091 -4.8659 -1.2840 28 1 0.6077 -5.0539 0.4860 29 1 2.8608 -6.0847 0.3776 30 1 2.8616 -5.8964 -1.3924 31 1 1.2990 -7.7030 1.3357 32 1 2.2501 -8.4124 -3.0239 33 1 3.8579 -10.2331 -3.4237 34 1 2.8600 -8.7914 1.1800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760710924.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:02 Heat of formation + Delta-G solvation = -115.954176 kcal Electronic energy + Delta-G solvation = -20674.740738 eV Core-core repulsion = 17043.569899 eV Total energy + Delta-G solvation = -3631.170839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99640 -39.45837 -38.51159 -37.57742 -37.28487 -35.51423 -34.50271 -32.87597 -31.99307 -31.08014 -28.48220 -26.30147 -24.07324 -23.40918 -22.21607 -21.65049 -19.29497 -18.83597 -17.53741 -17.45608 -17.23739 -16.64704 -16.25233 -16.12895 -15.84728 -15.22196 -15.11205 -14.88794 -14.79653 -14.27354 -13.86353 -13.56912 -13.25930 -13.05377 -12.93681 -12.86263 -12.78865 -12.60298 -12.33549 -12.17359 -12.09303 -11.99813 -11.98189 -11.82498 -11.19895 -10.92456 -10.03004 -9.87438 -9.67396 -9.45855 -8.29055 -6.84166 -0.17240 0.02811 0.77497 1.15178 1.41503 1.42557 1.58667 2.25181 2.32242 2.48352 3.05880 3.46224 3.48311 3.56075 3.62770 3.98627 4.03163 4.07147 4.16906 4.25225 4.37391 4.55804 4.69073 4.75243 4.84613 4.98513 5.10125 5.16593 5.33478 5.36476 5.51230 5.89362 6.26672 6.29278 6.71696 6.87947 7.57491 8.50697 8.68553 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.002274 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.231490 B =12312.508768 C =12436.680010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.247 1.247 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.635 6.635 11 N -0.756 5.756 12 C 0.138 3.862 13 C -0.138 4.138 14 C 0.158 3.842 15 H 0.118 0.882 16 O -0.566 6.566 17 C -0.095 4.095 18 C -0.090 4.090 19 C -0.094 4.094 20 C -0.044 4.044 21 Cl -0.054 7.054 22 C -0.040 4.040 23 Cl -0.054 7.054 24 C -0.095 4.095 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.386 0.614 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.388 -22.394 -3.548 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.170 1.170 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.523 6.523 11 N -0.411 5.411 12 C 0.013 3.987 13 C -0.176 4.176 14 C 0.099 3.901 15 H 0.135 0.865 16 O -0.374 6.374 17 C -0.096 4.096 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.072 4.072 21 Cl -0.024 7.024 22 C -0.068 4.068 23 Cl -0.025 7.025 24 C -0.114 4.114 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.236 0.764 32 H 0.181 0.819 33 H 0.183 0.817 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.019 -22.524 -3.844 25.368 hybrid contribution 1.065 0.420 0.588 1.287 sum 12.084 -22.104 -3.257 25.401 Atomic orbital electron populations 1.70203 1.09624 1.28948 1.36530 1.27007 0.95501 1.05079 0.91213 0.84990 0.78917 0.75093 0.79171 1.18757 1.19880 1.17048 1.21446 0.95247 0.90300 1.54095 0.89319 1.18641 0.86774 0.84475 0.76191 1.90557 1.16387 1.87672 1.57640 1.45803 1.09326 1.05674 1.80269 1.20865 0.94749 0.83830 0.99224 1.22365 0.97875 0.92645 1.04718 1.20741 0.91455 0.88924 0.89011 0.86464 1.86667 1.38513 1.94191 1.17994 1.20616 0.97672 0.97559 0.93789 1.21396 0.96659 0.95669 0.97112 1.21316 0.95527 0.95421 0.98974 1.21009 0.97595 0.95235 0.93354 1.98392 1.59131 1.48543 1.96382 1.20825 0.99605 0.98419 0.87903 1.98395 1.79444 1.79966 1.44658 1.20918 0.94870 0.94525 1.01079 0.91580 0.77030 0.95104 0.94893 0.89713 0.88789 0.76384 0.81883 0.81709 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.71 11.85 21.83 0.26 -50.45 16 2 C 0.03 1.50 5.49 85.30 0.47 1.97 16 3 Si 1.00 40.63 29.56 68.60 2.03 42.66 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.57 -32.37 9.53 24.83 0.24 -32.13 16 8 H 0.09 4.44 7.86 -2.91 -0.02 4.42 16 9 C 0.54 31.05 7.74 86.36 0.67 31.72 16 10 O -0.63 -43.09 15.05 -4.32 -0.06 -43.15 16 11 N -0.76 -32.91 5.55 -467.40 -2.59 -35.51 16 12 C 0.14 5.03 5.57 86.38 0.48 5.51 16 13 C -0.14 -3.09 4.99 30.60 0.15 -2.94 16 14 C 0.16 3.04 3.21 29.85 0.10 3.13 16 15 H 0.12 2.23 8.05 -2.39 -0.02 2.22 16 16 O -0.57 -12.51 12.67 -148.98 -1.89 -14.39 16 17 C -0.10 -1.51 5.00 -19.87 -0.10 -1.61 16 18 C -0.09 -1.19 9.68 22.27 0.22 -0.97 16 19 C -0.09 -1.23 9.83 22.29 0.22 -1.01 16 20 C -0.04 -0.73 6.32 22.35 0.14 -0.59 16 21 Cl -0.05 -0.87 27.96 -2.72 -0.08 -0.94 16 22 C -0.04 -0.69 6.32 22.35 0.14 -0.55 16 23 Cl -0.05 -0.94 27.96 -2.72 -0.08 -1.02 16 24 C -0.10 -1.52 9.11 22.29 0.20 -1.32 16 25 H 0.27 15.25 8.29 -92.71 -0.77 14.49 16 26 H 0.40 14.42 8.45 -92.71 -0.78 13.64 16 27 H 0.03 1.22 8.14 -2.38 -0.02 1.21 16 28 H 0.03 1.35 7.82 -2.39 -0.02 1.34 16 29 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.39 5.95 7.39 -74.06 -0.55 5.41 16 32 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.15 1.96 6.62 -2.91 -0.02 1.94 16 Total: -1.00 -79.11 329.76 0.35 -78.77 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.16 Total: 22.81 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 2.92 Total: 1.22 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.34 Total: -85.96 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -1.95 Total: -57.54 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.15 Total: -1.96 kcal Total: -79.11 0.35 -78.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760710924.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.188 kcal (2) G-P(sol) polarization free energy of solvation -79.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds