Wall clock time and date at job start Tue Mar 31 2020 11:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48500 * 109.46921 * 240.00274 * 3 2 1 5 5 H 1.48506 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47056 * 120.00159 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 O 1.45206 * 109.46777 * 180.02562 * 11 10 9 13 13 C 1.34765 * 116.99970 * 179.97438 * 12 11 10 14 14 O 1.21513 * 119.99779 * 0.02562 * 13 12 11 15 15 C 1.47382 * 119.99753 * 180.02562 * 13 12 11 16 16 C 1.39846 * 120.06837 * 359.72438 * 15 13 12 17 17 C 1.37702 * 119.92964 * 179.74541 * 16 15 13 18 18 Cl 1.73600 * 119.96722 * 180.25526 * 17 16 15 19 19 C 1.39288 * 120.06579 * 0.53152 * 17 16 15 20 20 N 1.39146 * 119.92859 * 179.70217 * 19 17 16 21 21 C 1.39279 * 120.13642 * 359.72158 * 19 17 16 22 22 Cl 1.73603 * 119.96735 * 179.97438 * 21 19 17 23 23 C 1.37703 * 120.07026 * 0.02562 * 21 19 17 24 24 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 26 26 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 27 27 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 28 28 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 29 29 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 30 30 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 31 31 H 1.07996 * 120.03663 * 359.97395 * 16 15 13 32 32 H 0.97002 * 119.99748 * 180.02562 * 20 19 17 33 33 H 0.96996 * 120.00606 * 0.02562 * 20 19 17 34 34 H 1.07998 * 120.03739 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 8 2.4240 -6.0907 0.0005 13 6 1.9090 -7.3360 0.0006 14 8 0.7043 -7.4952 -0.0003 15 6 2.8069 -8.5048 0.0018 16 6 4.1935 -8.3231 -0.0030 17 6 5.0297 -9.4171 0.0034 18 17 6.7512 -9.1927 0.0042 19 6 4.4958 -10.7036 0.0035 20 7 5.3436 -11.8070 0.0037 21 6 3.1153 -10.8877 0.0029 22 17 2.4546 -12.4931 0.0023 23 6 2.2738 -9.7977 0.0017 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8902 27 1 2.8721 -3.6043 0.8905 28 1 2.8721 -3.6042 -0.8895 29 1 0.8541 -5.0446 -0.8903 30 1 0.8535 -5.0451 0.8897 31 1 4.6080 -7.3259 -0.0080 32 1 4.9728 -12.7034 0.0034 33 1 6.3052 -11.6800 0.0042 34 1 1.2034 -9.9412 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761435068.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:22 Heat of formation + Delta-G solvation = -94.197752 kcal Electronic energy + Delta-G solvation = -20459.744064 eV Core-core repulsion = 16829.516654 eV Total energy + Delta-G solvation = -3630.227410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64460 -39.52397 -37.18829 -36.74267 -36.35899 -35.23724 -33.97413 -31.74015 -31.12474 -29.74529 -27.06520 -24.38379 -23.52181 -22.92574 -20.96690 -20.33339 -18.42507 -18.02124 -17.41846 -16.78566 -16.29009 -16.13259 -15.42730 -14.96806 -14.78868 -14.77822 -14.46157 -13.96506 -13.86560 -13.06834 -12.77797 -12.21787 -12.19624 -12.09271 -11.84737 -11.72640 -11.60596 -11.44774 -11.22050 -10.94443 -10.70802 -10.63133 -10.44328 -10.38158 -9.71289 -9.50784 -9.26094 -9.16988 -8.37563 -8.24308 -6.02561 -4.05668 0.37629 0.58589 1.36006 1.86300 2.32444 2.82455 3.05397 3.28811 3.33260 3.37605 3.40142 4.23822 4.41454 4.47830 4.69178 4.73277 4.94508 5.33337 5.37531 5.40383 5.59169 5.63575 5.77578 5.92504 6.02825 6.46594 6.54674 6.54910 6.82852 6.95125 6.98849 7.61041 7.72295 7.88633 7.95772 8.36700 9.00428 9.58567 11.08859 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.002390 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.152822 B =11712.570834 C =12989.974182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.070 3.930 12 O -0.353 6.353 13 C 0.512 3.488 14 O -0.509 6.509 15 C -0.160 4.160 16 C 0.007 3.993 17 C -0.125 4.125 18 Cl -0.052 7.052 19 C 0.273 3.727 20 N -0.851 5.851 21 C -0.125 4.125 22 Cl -0.053 7.053 23 C 0.011 3.989 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.408 0.592 33 H 0.408 0.592 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.472 -27.573 0.001 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.003 4.003 12 O -0.270 6.270 13 C 0.356 3.644 14 O -0.399 6.399 15 C -0.164 4.164 16 C -0.012 4.012 17 C -0.157 4.157 18 Cl -0.023 7.023 19 C 0.161 3.839 20 N -0.390 5.390 21 C -0.156 4.156 22 Cl -0.025 7.025 23 C -0.008 4.008 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.176 0.824 32 H 0.239 0.761 33 H 0.239 0.761 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.054 -27.580 -0.001 29.713 hybrid contribution 0.599 0.515 -0.002 0.790 sum 11.653 -27.065 -0.003 29.467 Atomic orbital electron populations 1.69954 1.06080 1.26879 1.50466 1.25028 0.94875 0.99343 0.95204 0.86609 0.79534 0.82913 0.78664 1.20185 1.21279 1.20178 1.21133 0.93085 0.90690 1.51105 0.92473 1.19048 0.93836 0.90696 0.97713 1.21776 0.99968 0.90919 1.02020 1.23552 0.91147 0.83251 1.02357 1.86532 1.42432 1.14706 1.83321 1.20641 0.86810 0.83675 0.73240 1.90848 1.15913 1.86953 1.46196 1.18697 0.92147 0.91227 1.14346 1.21327 0.91412 0.99133 0.89350 1.19983 0.85992 0.92034 1.17648 1.98372 1.09606 1.96868 1.97476 1.17247 0.88666 0.87231 0.90769 1.42682 1.08925 1.06305 1.81058 1.19848 0.90286 0.87433 1.18071 1.98364 1.85150 1.21416 1.97522 1.21003 1.01035 0.88884 0.89908 0.92830 0.96214 0.96200 0.92076 0.92084 0.91317 0.91327 0.82368 0.76127 0.76072 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 11 C 0.07 1.26 5.48 37.16 0.20 1.47 16 12 O -0.35 -5.74 9.46 -40.67 -0.38 -6.13 16 13 C 0.51 7.81 7.89 34.45 0.27 8.08 16 14 O -0.51 -8.99 16.13 -19.28 -0.31 -9.30 16 15 C -0.16 -1.90 5.87 -104.97 -0.62 -2.52 16 16 C 0.01 0.08 9.38 -39.18 -0.37 -0.29 16 17 C -0.12 -1.13 6.33 -39.39 -0.25 -1.38 16 18 Cl -0.05 -0.41 27.57 -51.86 -1.43 -1.84 16 19 C 0.27 2.23 6.75 -83.76 -0.57 1.67 16 20 N -0.85 -4.70 8.97 32.45 0.29 -4.41 16 21 C -0.12 -1.11 6.33 -39.39 -0.25 -1.36 16 22 Cl -0.05 -0.40 27.57 -51.86 -1.43 -1.83 16 23 C 0.01 0.12 9.36 -39.17 -0.37 -0.25 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.16 1.59 7.60 -52.49 -0.40 1.19 16 32 H 0.41 1.75 7.47 -40.82 -0.31 1.44 16 33 H 0.41 1.79 7.47 -40.82 -0.31 1.49 16 34 H 0.16 1.58 7.64 -52.49 -0.40 1.18 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -30.99 331.37 -8.68 -39.67 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -3.49 Total: -1.71 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.64 Total: -9.88 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 1.03 Total: -30.46 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.70 Total: -15.42 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -2.86 Total: -3.68 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.99 -8.68 -39.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761435068.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.528 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds