Wall clock time and date at job start Tue Mar 31 2020 11:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 113.99928 * 2 1 4 4 C 1.53010 * 109.47098 * 180.72193 * 3 2 1 5 5 N 1.46897 * 109.46829 * 68.39400 * 4 3 2 6 6 C 1.46907 * 110.99818 * 285.85707 * 5 4 3 7 7 C 1.50706 * 109.46906 * 171.87206 * 6 5 4 8 8 H 1.07997 * 119.99856 * 354.49217 * 7 6 5 9 9 C 1.37878 * 119.99951 * 174.48978 * 7 6 5 10 10 N 1.31511 * 119.99830 * 352.75074 * 9 7 6 11 11 Si 1.86790 * 120.00009 * 172.74704 * 9 7 6 12 12 H 1.48500 * 109.47279 * 65.00663 * 11 9 7 13 13 H 1.48504 * 109.47478 * 185.00454 * 11 9 7 14 14 H 1.48503 * 109.47255 * 305.00700 * 11 9 7 15 15 C 1.46897 * 110.99876 * 161.90811 * 5 4 3 16 16 C 1.50698 * 109.47038 * 293.94962 * 15 5 4 17 17 O 1.34350 * 125.79869 * 270.33536 * 16 15 5 18 18 C 1.34300 * 109.48169 * 180.14964 * 17 16 15 19 19 C 1.34510 * 108.43632 * 359.56356 * 18 17 16 20 20 C 1.34572 * 125.79645 * 89.99935 * 16 15 5 21 21 Br 1.89105 * 126.58573 * 359.97438 * 20 16 15 22 22 H 1.09002 * 109.47325 * 183.64927 * 1 2 3 23 23 H 1.08993 * 109.47560 * 303.65282 * 1 2 3 24 24 H 1.09001 * 109.47284 * 63.65489 * 1 2 3 25 25 H 1.08993 * 109.47639 * 60.72410 * 3 2 1 26 26 H 1.08999 * 109.47083 * 300.71910 * 3 2 1 27 27 H 1.09000 * 109.46765 * 308.39639 * 4 3 2 28 28 H 1.08993 * 109.46790 * 188.39319 * 4 3 2 29 29 H 1.08997 * 109.47216 * 291.86888 * 6 5 4 30 30 H 1.08990 * 109.47285 * 51.87516 * 6 5 4 31 31 H 0.97001 * 120.00118 * 179.97438 * 10 9 7 32 32 H 1.09007 * 109.47439 * 173.95341 * 15 5 4 33 33 H 1.08994 * 109.47567 * 53.95062 * 15 5 4 34 34 H 1.08003 * 125.78154 * 179.82388 * 18 17 16 35 35 H 1.08001 * 126.57300 * 180.26476 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0182 5 7 3.9683 0.6442 -1.3137 6 6 3.6750 -0.7921 -1.4095 7 6 3.9462 -1.2676 -2.8136 8 1 4.2149 -0.5576 -3.5817 9 6 3.8512 -2.6091 -3.1176 10 7 3.6651 -3.4891 -2.1581 11 14 3.9867 -3.1766 -4.8920 12 1 5.3506 -2.8854 -5.4021 13 1 3.7324 -4.6378 -4.9653 14 1 2.9849 -2.4576 -5.7195 15 6 5.3954 0.9065 -1.5431 16 6 5.6174 2.3906 -1.6816 17 8 5.5682 3.0890 -2.8282 18 6 5.8185 4.3839 -2.5750 19 6 6.0220 4.5273 -1.2532 20 6 5.8924 3.2424 -0.6767 21 35 6.0701 2.8055 1.1546 22 1 -0.3634 -1.0256 0.0654 23 1 -0.3634 0.5694 0.8554 24 1 -0.3634 0.4561 -0.9209 25 1 1.6989 1.8418 0.8963 26 1 1.6784 1.8508 -0.8835 27 1 3.8564 0.5155 0.7802 28 1 3.9795 2.1686 0.1318 29 1 4.3086 -1.3396 -0.7118 30 1 2.6278 -0.9663 -1.1628 31 1 3.5979 -4.4329 -2.3720 32 1 5.7149 0.4046 -2.4565 33 1 5.9742 0.5296 -0.7000 34 1 5.8470 5.1766 -3.3080 35 1 6.2421 5.4473 -0.7320 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769335967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:22 Heat of formation + Delta-G solvation = -13.375483 kcal Electronic energy + Delta-G solvation = -19394.758438 eV Core-core repulsion = 16248.731989 eV Total energy + Delta-G solvation = -3146.026449 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.50782 -37.87897 -36.14025 -33.45594 -32.51109 -30.89607 -30.16748 -29.03117 -26.66807 -25.73753 -24.41304 -22.25411 -21.55070 -20.58026 -19.73503 -17.11346 -16.62782 -15.95758 -15.78729 -15.58334 -14.88226 -14.52193 -14.36659 -13.68897 -13.43937 -13.21337 -12.84619 -12.71165 -12.38868 -12.02869 -11.61710 -11.43967 -11.18659 -10.87993 -10.85627 -10.74576 -10.46990 -10.41056 -10.02722 -9.80136 -9.38242 -9.24730 -8.84740 -8.36014 -8.27102 -7.27309 -5.94398 -3.93919 1.75159 1.78778 2.45307 3.20281 3.37217 3.41804 3.45593 4.36030 4.48482 4.77727 4.90474 5.02918 5.37875 5.41567 5.55289 5.69548 5.73491 5.79006 5.84271 5.90244 5.93861 6.07538 6.09554 6.22379 6.31290 6.44465 6.50697 7.15848 7.43095 7.52211 7.72923 7.86695 8.21175 8.29254 8.60481 9.13577 9.67949 11.15787 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.005468 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.565237 B = 5119.857756 C = 6035.647177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.071 3.929 4 C 0.043 3.957 5 N -0.525 5.525 6 C 0.184 3.816 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.122 3.878 16 C 0.078 3.922 17 O -0.153 6.153 18 C -0.044 4.044 19 C -0.189 4.189 20 C -0.206 4.206 21 Br -0.019 7.019 22 H 0.081 0.919 23 H 0.030 0.970 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.080 0.920 29 H -0.004 1.004 30 H 0.071 0.929 31 H 0.260 0.740 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.205 0.795 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 15.823 6.045 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.006 4.006 4 C -0.086 4.086 5 N -0.251 5.251 6 C 0.060 3.940 7 C -0.552 4.552 8 H 0.079 0.921 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.720 3.280 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.006 4.006 16 C 0.023 3.977 17 O -0.048 6.048 18 C -0.112 4.112 19 C -0.210 4.210 20 C -0.288 4.288 21 Br 0.065 6.935 22 H 0.099 0.901 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.014 0.986 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.222 0.778 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.338 15.392 6.091 16.718 hybrid contribution 0.295 -0.159 -0.568 0.659 sum 2.633 15.233 5.524 16.416 Atomic orbital electron populations 1.22651 0.82662 1.02193 0.98957 1.88146 1.18386 1.27202 1.94901 1.22494 0.94058 0.85100 0.98950 1.22439 0.93618 1.00283 0.92245 1.62237 1.12821 1.21433 1.28617 1.20154 0.99000 0.78386 0.96474 1.21172 1.46800 0.92061 0.95145 0.92148 1.24929 0.95642 0.96666 0.97017 1.69974 1.50074 1.01677 1.31537 0.86665 0.78498 0.77358 0.85492 1.20468 1.21431 1.20186 1.20671 0.92373 0.83523 1.04000 1.22949 0.97430 0.95491 0.81825 1.84207 1.68156 1.18958 1.33429 1.23956 1.05740 0.84337 0.97157 1.21537 1.08088 0.97249 0.94081 1.21912 1.18620 0.96174 0.92076 1.96576 1.97031 1.93819 1.06098 0.90071 0.95183 0.94484 0.94231 0.93013 0.94259 0.90203 0.98641 0.91134 0.93008 0.87130 0.91918 0.77833 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.36 7.77 -35.23 -0.27 -7.64 16 3 C 0.07 1.26 6.22 37.16 0.23 1.49 16 4 C 0.04 0.81 4.83 -3.82 -0.02 0.79 16 5 N -0.53 -11.46 4.44 -237.52 -1.06 -12.52 16 6 C 0.18 4.80 4.51 -4.97 -0.02 4.78 16 7 C -0.51 -14.39 8.22 -34.44 -0.28 -14.68 16 8 H 0.06 1.68 7.28 -52.49 -0.38 1.30 16 9 C 0.06 1.68 5.45 -17.82 -0.10 1.58 16 10 N -0.89 -26.66 13.28 55.43 0.74 -25.92 16 11 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.12 2.42 5.15 -4.98 -0.03 2.40 16 16 C 0.08 1.35 6.29 -35.61 -0.22 1.13 16 17 O -0.15 -2.53 10.65 5.59 0.06 -2.47 16 18 C -0.04 -0.54 12.09 29.41 0.36 -0.18 16 19 C -0.19 -2.41 10.91 -39.69 -0.43 -2.84 16 20 C -0.21 -3.15 5.58 -39.67 -0.22 -3.37 16 21 Br -0.02 -0.27 31.09 -68.01 -2.11 -2.39 16 22 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.78 8.02 -51.93 -0.42 0.36 16 28 H 0.08 1.37 3.91 -51.93 -0.20 1.17 16 29 H 0.00 -0.12 8.10 -51.93 -0.42 -0.54 16 30 H 0.07 1.97 5.10 -51.93 -0.26 1.71 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.11 2.37 6.62 -51.93 -0.34 2.02 16 33 H 0.06 1.22 7.73 -51.93 -0.40 0.82 16 34 H 0.21 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 310.26 15.07 4.68 4.68 Total: -1.00 -31.11 310.26 -7.15 -38.26 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.53 Total: -1.46 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 0.37 Total: -7.29 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.32 Total: -38.44 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.21 Total: -10.10 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.11 Total: -2.39 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.11 -7.15 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769335967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.880 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds