Wall clock time and date at job start Tue Mar 31 2020 11:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 113.99928 * 2 1 4 4 C 1.53010 * 109.47098 * 180.72193 * 3 2 1 5 5 N 1.46897 * 109.46829 * 68.39400 * 4 3 2 6 6 C 1.46907 * 110.99818 * 285.85707 * 5 4 3 7 7 C 1.50706 * 109.46906 * 171.87206 * 6 5 4 8 8 H 1.07997 * 119.99856 * 354.49217 * 7 6 5 9 9 C 1.37878 * 119.99951 * 174.48978 * 7 6 5 10 10 N 1.31511 * 119.99830 * 352.75074 * 9 7 6 11 11 Si 1.86790 * 120.00009 * 172.74704 * 9 7 6 12 12 H 1.48500 * 109.47279 * 65.00663 * 11 9 7 13 13 H 1.48504 * 109.47478 * 185.00454 * 11 9 7 14 14 H 1.48503 * 109.47255 * 305.00700 * 11 9 7 15 15 C 1.46897 * 110.99876 * 161.90811 * 5 4 3 16 16 C 1.50698 * 109.47038 * 293.94962 * 15 5 4 17 17 O 1.34350 * 125.79869 * 270.33536 * 16 15 5 18 18 C 1.34300 * 109.48169 * 180.14964 * 17 16 15 19 19 C 1.34510 * 108.43632 * 359.56356 * 18 17 16 20 20 C 1.34572 * 125.79645 * 89.99935 * 16 15 5 21 21 Br 1.89105 * 126.58573 * 359.97438 * 20 16 15 22 22 H 1.09002 * 109.47325 * 183.64927 * 1 2 3 23 23 H 1.08993 * 109.47560 * 303.65282 * 1 2 3 24 24 H 1.09001 * 109.47284 * 63.65489 * 1 2 3 25 25 H 1.08993 * 109.47639 * 60.72410 * 3 2 1 26 26 H 1.08999 * 109.47083 * 300.71910 * 3 2 1 27 27 H 1.09000 * 109.46765 * 308.39639 * 4 3 2 28 28 H 1.08993 * 109.46790 * 188.39319 * 4 3 2 29 29 H 1.08997 * 109.47216 * 291.86888 * 6 5 4 30 30 H 1.08990 * 109.47285 * 51.87516 * 6 5 4 31 31 H 0.97001 * 120.00118 * 179.97438 * 10 9 7 32 32 H 1.09007 * 109.47439 * 173.95341 * 15 5 4 33 33 H 1.08994 * 109.47567 * 53.95062 * 15 5 4 34 34 H 1.08003 * 125.78154 * 179.82388 * 18 17 16 35 35 H 1.08001 * 126.57300 * 180.26476 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0182 5 7 3.9683 0.6442 -1.3137 6 6 3.6750 -0.7921 -1.4095 7 6 3.9462 -1.2676 -2.8136 8 1 4.2149 -0.5576 -3.5817 9 6 3.8512 -2.6091 -3.1176 10 7 3.6651 -3.4891 -2.1581 11 14 3.9867 -3.1766 -4.8920 12 1 5.3506 -2.8854 -5.4021 13 1 3.7324 -4.6378 -4.9653 14 1 2.9849 -2.4576 -5.7195 15 6 5.3954 0.9065 -1.5431 16 6 5.6174 2.3906 -1.6816 17 8 5.5682 3.0890 -2.8282 18 6 5.8185 4.3839 -2.5750 19 6 6.0220 4.5273 -1.2532 20 6 5.8924 3.2424 -0.6767 21 35 6.0701 2.8055 1.1546 22 1 -0.3634 -1.0256 0.0654 23 1 -0.3634 0.5694 0.8554 24 1 -0.3634 0.4561 -0.9209 25 1 1.6989 1.8418 0.8963 26 1 1.6784 1.8508 -0.8835 27 1 3.8564 0.5155 0.7802 28 1 3.9795 2.1686 0.1318 29 1 4.3086 -1.3396 -0.7118 30 1 2.6278 -0.9663 -1.1628 31 1 3.5979 -4.4329 -2.3720 32 1 5.7149 0.4046 -2.4565 33 1 5.9742 0.5296 -0.7000 34 1 5.8470 5.1766 -3.3080 35 1 6.2421 5.4473 -0.7320 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769335967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:20 Heat of formation + Delta-G solvation = -34.357058 kcal Electronic energy + Delta-G solvation = -19395.668267 eV Core-core repulsion = 16248.731989 eV Total energy + Delta-G solvation = -3146.936278 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.66632 -39.42104 -37.71798 -34.89506 -34.39110 -32.14016 -31.48080 -30.65650 -28.38516 -27.07491 -26.05988 -23.98878 -22.75162 -22.02920 -21.14697 -18.61985 -18.23084 -17.51467 -17.19307 -16.98716 -16.62901 -16.13578 -15.73107 -15.32398 -14.83282 -14.74446 -14.14827 -14.00777 -13.81142 -13.58583 -13.33819 -12.83040 -12.79832 -12.73148 -12.48561 -12.33465 -12.16689 -12.02803 -11.76715 -11.17604 -11.09851 -10.60424 -10.46255 -10.33030 -9.50258 -9.05410 -8.13344 -6.20837 0.56188 0.58836 1.41318 1.41744 1.44659 1.52902 2.07631 2.43759 3.00163 3.20132 3.29616 3.69959 3.86120 4.15091 4.22672 4.34907 4.42458 4.54423 4.56765 4.59841 4.65832 4.72272 4.76162 4.88118 4.93870 4.99380 5.33328 5.37786 5.57286 5.69252 6.04576 6.16660 6.25673 6.45006 6.62898 6.94828 7.45868 8.97086 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013847 B = 0.005468 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.565237 B = 5119.857756 C = 6035.647177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.071 3.929 4 C 0.046 3.954 5 N -0.530 5.530 6 C 0.202 3.798 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.961 3.039 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.129 3.871 16 C 0.040 3.960 17 O -0.175 6.175 18 C -0.024 4.024 19 C -0.195 4.195 20 C -0.198 4.198 21 Br -0.012 7.012 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.025 0.975 28 H 0.100 0.900 29 H -0.042 1.042 30 H 0.053 0.947 31 H 0.262 0.738 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.252 0.748 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 18.235 5.415 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.006 4.006 4 C -0.082 4.082 5 N -0.255 5.255 6 C 0.077 3.923 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.786 3.214 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.195 1.195 15 C 0.001 3.999 16 C -0.014 4.014 17 O -0.070 6.070 18 C -0.092 4.092 19 C -0.215 4.215 20 C -0.279 4.279 21 Br 0.072 6.928 22 H 0.099 0.901 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.117 0.883 29 H -0.024 1.024 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.268 0.732 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.319 17.829 5.471 18.793 hybrid contribution 0.321 -0.788 -0.320 0.909 sum 2.641 17.041 5.151 17.998 Atomic orbital electron populations 1.22817 0.80560 1.02908 1.00531 1.88072 1.20860 1.28616 1.95198 1.22576 0.92907 0.84654 1.00443 1.22518 0.94953 1.00518 0.90245 1.62149 1.14427 1.18449 1.30508 1.19745 0.97080 0.80780 0.94716 1.21457 1.46649 0.92432 0.95925 0.92418 1.25794 0.95174 0.96737 1.01443 1.70109 1.51052 1.01992 1.33792 0.85574 0.78894 0.76955 0.80007 1.19475 1.20842 1.19492 1.20373 0.91006 0.86011 1.02484 1.22295 1.01607 0.94418 0.83121 1.84172 1.68723 1.20805 1.33323 1.24972 1.02588 0.83314 0.98295 1.21910 1.08193 0.97117 0.94291 1.22174 1.16653 0.97057 0.92050 1.96591 1.96890 1.93999 1.05334 0.90120 0.92106 0.94074 0.90807 0.93230 0.95654 0.88261 1.02441 0.92898 0.92879 0.89720 0.92386 0.73184 0.80033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.41 -16.51 7.77 -148.98 -1.16 -17.67 16 3 C 0.07 2.47 6.22 71.99 0.45 2.92 16 4 C 0.05 1.75 4.83 86.31 0.42 2.16 16 5 N -0.53 -23.92 4.44 -905.36 -4.02 -27.94 16 6 C 0.20 11.10 4.51 85.56 0.39 11.49 16 7 C -0.53 -30.53 8.22 25.60 0.21 -30.32 16 8 H 0.06 3.30 7.28 -2.91 -0.02 3.28 16 9 C 0.01 0.39 5.45 84.66 0.46 0.86 16 10 N -0.93 -57.07 13.28 21.45 0.28 -56.79 16 11 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 14 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 15 C 0.13 5.33 5.15 85.56 0.44 5.77 16 16 C 0.04 1.37 6.29 24.85 0.16 1.53 16 17 O -0.18 -5.54 10.65 -2.91 -0.03 -5.57 16 18 C -0.02 -0.52 12.09 66.97 0.81 0.29 16 19 C -0.20 -4.31 10.91 22.20 0.24 -4.07 16 20 C -0.20 -5.72 5.58 22.21 0.12 -5.60 16 21 Br -0.01 -0.33 31.09 -20.37 -0.63 -0.96 16 22 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.03 1.03 8.02 -2.39 -0.02 1.01 16 28 H 0.10 3.35 3.91 -2.39 -0.01 3.34 16 29 H -0.04 -2.58 8.10 -2.39 -0.02 -2.60 16 30 H 0.05 3.11 5.10 -2.39 -0.01 3.10 16 31 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.08 3.85 6.62 -2.38 -0.02 3.83 16 33 H 0.06 2.38 7.73 -2.39 -0.02 2.36 16 34 H 0.25 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.18 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -69.59 310.26 2.50 -67.09 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.09 Total: 7.47 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 4.94 Total: -12.88 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -3.74 Total: -84.73 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -1.19 Total: -23.24 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -0.63 Total: -0.96 kcal Total: -69.59 2.50 -67.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769335967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.732 kcal (2) G-P(sol) polarization free energy of solvation -69.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds