Wall clock time and date at job start Tue Mar 31 2020 12:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32770 * 124.71174 * 2 1 4 4 C 1.44425 * 113.08301 * 180.26974 * 3 2 1 5 5 C 1.47190 * 123.45947 * 179.72701 * 4 3 2 6 6 O 1.21640 * 119.99784 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00165 * 0.02682 * 5 4 3 8 8 S 1.65600 * 119.99892 * 179.97438 * 7 5 4 9 9 O 1.42105 * 104.27302 * 181.07427 * 8 7 5 10 10 O 1.42099 * 104.27547 * 308.92909 * 8 7 5 11 11 C 1.81391 * 104.44934 * 65.00095 * 8 7 5 12 12 C 1.53001 * 109.47229 * 179.97438 * 11 8 7 13 13 C 1.50699 * 109.47212 * 180.02562 * 12 11 8 14 14 H 1.08003 * 120.00164 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99968 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00078 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00037 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47205 * 60.00043 * 17 15 13 19 19 H 1.48500 * 109.47218 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47096 * 299.99880 * 17 15 13 21 21 C 1.36011 * 113.07836 * 359.50680 * 4 3 2 22 22 C 1.50701 * 124.59501 * 180.20062 * 21 4 3 23 23 S 1.70453 * 110.81620 * 0.47711 * 21 4 3 24 24 H 1.08994 * 109.47037 * 90.00316 * 1 2 3 25 25 H 1.09003 * 109.46455 * 210.00065 * 1 2 3 26 26 H 1.08999 * 109.47053 * 329.99575 * 1 2 3 27 27 H 1.08002 * 123.45547 * 359.97438 * 3 2 1 28 28 H 0.97002 * 119.99392 * 359.97438 * 7 5 4 29 29 H 1.09001 * 109.47205 * 299.99948 * 11 8 7 30 30 H 1.09003 * 109.47355 * 59.99860 * 11 8 7 31 31 H 1.09001 * 109.47088 * 300.00147 * 12 11 8 32 32 H 1.08996 * 109.47145 * 60.00062 * 12 11 8 33 33 H 0.96993 * 120.00054 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47114 * 180.34080 * 22 21 4 35 35 H 1.08998 * 109.46634 * 300.34064 * 22 21 4 36 36 H 1.08998 * 109.47062 * 60.33564 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0063 5 6 4.7201 1.8395 -0.0134 6 8 5.8945 1.5228 -0.0189 7 7 4.3733 3.1419 -0.0137 8 16 5.5461 4.3110 -0.0211 9 8 4.8222 5.5335 0.0063 10 8 6.4102 3.9472 1.0467 11 6 6.3832 4.1023 -1.6167 12 6 7.5016 5.1385 -1.7453 13 6 8.1966 4.9656 -3.0712 14 1 7.8733 4.1935 -3.7538 15 6 9.2459 5.7923 -3.4125 16 7 9.6400 6.7320 -2.5811 17 14 10.1079 5.5774 -5.0557 18 1 9.1294 5.7668 -6.1565 19 1 11.1934 6.5832 -5.1805 20 1 10.6860 4.2120 -5.1367 21 6 3.9477 -0.5327 -0.0001 22 6 5.3335 -1.1250 -0.0001 23 16 2.5065 -1.4427 -0.0001 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.8615 2.0940 -0.0004 28 1 3.4367 3.3943 -0.0097 29 1 6.8074 3.1000 -1.6761 30 1 5.6649 4.2414 -2.4248 31 1 7.0770 6.1407 -1.6860 32 1 8.2199 4.9999 -0.9373 33 1 10.3779 7.3138 -2.8214 34 1 5.2636 -2.2128 -0.0006 35 1 5.8696 -0.7950 -0.8899 36 1 5.8694 -0.7957 0.8900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776123620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:17 Heat of formation + Delta-G solvation = -96.578893 kcal Electronic energy + Delta-G solvation = -21883.507210 eV Core-core repulsion = 18393.097054 eV Total energy + Delta-G solvation = -3490.410156 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32196 -37.55570 -36.63485 -35.59627 -34.50661 -33.88505 -33.32758 -31.16657 -29.66082 -26.05901 -25.58193 -24.26525 -21.71283 -21.55240 -19.72893 -19.31794 -17.76594 -17.58725 -16.80222 -16.35363 -15.82655 -15.28201 -15.07472 -14.88931 -14.53615 -14.22242 -14.17512 -13.55187 -13.47557 -13.36904 -13.26865 -12.52812 -12.38098 -12.27864 -11.90407 -11.88432 -11.78253 -11.70244 -11.59287 -11.29610 -11.05363 -10.98420 -10.82271 -10.40109 -10.36062 -10.17197 -9.69371 -9.17535 -8.95286 -8.77052 -8.48124 -6.10595 -4.16074 0.43679 0.53246 1.11827 1.52639 1.55521 2.76071 2.96414 3.29422 3.33783 3.36012 4.05483 4.21086 4.38446 4.39150 4.57459 4.73432 4.83378 4.92417 5.00971 5.12466 5.24573 5.28002 5.42414 5.50503 5.57821 5.66280 5.67455 5.75483 5.96393 5.99950 6.48168 6.69398 7.30083 7.36910 7.52125 7.82302 8.18447 8.86643 9.48286 11.00534 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.003327 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.167151 B = 8413.872906 C = 9009.313742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.204 4.204 3 C -0.107 4.107 4 C -0.181 4.181 5 C 0.601 3.399 6 O -0.487 6.487 7 N -1.055 6.055 8 S 2.567 3.433 9 O -0.955 6.955 10 O -0.937 6.937 11 C -0.575 4.575 12 C 0.030 3.970 13 C -0.520 4.520 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.891 5.891 17 Si 0.902 3.098 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.131 4.131 22 C -0.088 4.088 23 S 0.189 5.811 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.150 0.850 28 H 0.426 0.574 29 H 0.132 0.868 30 H 0.121 0.879 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.575 -16.895 4.813 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.321 4.321 3 C -0.136 4.136 4 C -0.199 4.199 5 C 0.387 3.613 6 O -0.361 6.361 7 N -0.815 5.815 8 S 2.667 3.333 9 O -0.945 6.945 10 O -0.927 6.927 11 C -0.710 4.710 12 C -0.009 4.009 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.729 3.271 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.251 4.251 22 C -0.146 4.146 23 S 0.455 5.545 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.167 0.833 28 H 0.261 0.739 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.796 -17.925 5.602 26.570 hybrid contribution 0.290 1.424 -1.424 2.035 sum -18.506 -16.501 4.178 25.143 Atomic orbital electron populations 1.20352 0.87279 1.03391 1.03024 1.24277 1.00493 0.96056 1.11252 1.21096 0.90717 0.99643 1.02130 1.19975 0.93330 0.92680 1.13913 1.17437 0.88348 0.81607 0.73880 1.90980 1.18011 1.81373 1.45722 1.55294 1.25753 1.19500 1.80972 1.06666 0.74261 0.72803 0.79522 1.93588 1.71340 1.41407 1.88193 1.93595 1.65452 1.81964 1.51726 1.30338 1.12189 1.11845 1.16599 1.18987 0.90540 0.91374 1.00033 1.20945 1.16143 1.17357 1.01471 0.92014 1.25062 0.96832 0.95000 0.97549 1.69943 1.27758 1.19169 1.36003 0.86505 0.79152 0.78023 0.83449 1.20081 1.21066 1.20024 1.24622 1.02275 0.96638 1.01588 1.20541 0.89356 0.99310 1.05386 1.83051 0.92913 1.08200 1.70343 0.90531 0.91205 0.90278 0.83253 0.73883 0.85009 0.86049 0.94762 0.94557 0.92453 0.91513 0.88886 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.35 36.01 0.37 -0.03 16 2 C -0.20 -1.60 6.44 -36.18 -0.23 -1.83 16 3 C -0.11 -0.98 9.75 -39.02 -0.38 -1.36 16 4 C -0.18 -2.15 5.98 -104.63 -0.63 -2.78 16 5 C 0.60 8.91 7.53 -12.63 -0.10 8.82 16 6 O -0.49 -8.71 12.74 -11.88 -0.15 -8.86 16 7 N -1.05 -14.67 5.58 30.38 0.17 -14.50 16 8 S 2.57 48.21 5.11 -107.50 -0.55 47.67 16 9 O -0.95 -19.32 18.08 -57.54 -1.04 -20.36 16 10 O -0.94 -21.00 17.04 -64.79 -1.10 -22.11 16 11 C -0.57 -11.68 5.82 37.16 0.22 -11.46 16 12 C 0.03 0.78 4.98 -27.88 -0.14 0.65 16 13 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 14 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 17 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.13 -1.41 6.34 -35.11 -0.22 -1.63 16 22 C -0.09 -0.90 8.77 36.01 0.32 -0.59 16 23 S 0.19 1.48 22.93 -107.50 -2.46 -0.98 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.15 1.00 7.10 -52.49 -0.37 0.63 16 28 H 0.43 4.22 7.33 -34.48 -0.25 3.96 16 29 H 0.13 2.62 7.19 -51.92 -0.37 2.25 16 30 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 31 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.09 1.05 7.76 -51.93 -0.40 0.64 16 36 H 0.09 1.05 7.80 -51.93 -0.41 0.64 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -36.65 336.35 -9.86 -46.51 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.31 Total: 0.74 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -1.20 Total: -23.63 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.91 Total: -40.54 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -2.30 Total: -51.33 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 49.70 SS G_CDS: -3.01 Total: 46.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.65 -9.86 -46.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776123620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.065 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds