Wall clock time and date at job start Tue Mar 31 2020 12:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32770 * 124.71174 * 2 1 4 4 C 1.44425 * 113.08301 * 180.26974 * 3 2 1 5 5 C 1.47190 * 123.45947 * 179.72701 * 4 3 2 6 6 O 1.21640 * 119.99784 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00165 * 0.02682 * 5 4 3 8 8 S 1.65600 * 119.99892 * 179.97438 * 7 5 4 9 9 O 1.42105 * 104.27302 * 181.07427 * 8 7 5 10 10 O 1.42099 * 104.27547 * 308.92909 * 8 7 5 11 11 C 1.81391 * 104.44934 * 65.00095 * 8 7 5 12 12 C 1.53001 * 109.47229 * 179.97438 * 11 8 7 13 13 C 1.50699 * 109.47212 * 180.02562 * 12 11 8 14 14 H 1.08003 * 120.00164 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99968 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00078 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00037 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47205 * 60.00043 * 17 15 13 19 19 H 1.48500 * 109.47218 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47096 * 299.99880 * 17 15 13 21 21 C 1.36011 * 113.07836 * 359.50680 * 4 3 2 22 22 C 1.50701 * 124.59501 * 180.20062 * 21 4 3 23 23 S 1.70453 * 110.81620 * 0.47711 * 21 4 3 24 24 H 1.08994 * 109.47037 * 90.00316 * 1 2 3 25 25 H 1.09003 * 109.46455 * 210.00065 * 1 2 3 26 26 H 1.08999 * 109.47053 * 329.99575 * 1 2 3 27 27 H 1.08002 * 123.45547 * 359.97438 * 3 2 1 28 28 H 0.97002 * 119.99392 * 359.97438 * 7 5 4 29 29 H 1.09001 * 109.47205 * 299.99948 * 11 8 7 30 30 H 1.09003 * 109.47355 * 59.99860 * 11 8 7 31 31 H 1.09001 * 109.47088 * 300.00147 * 12 11 8 32 32 H 1.08996 * 109.47145 * 60.00062 * 12 11 8 33 33 H 0.96993 * 120.00054 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47114 * 180.34080 * 22 21 4 35 35 H 1.08998 * 109.46634 * 300.34064 * 22 21 4 36 36 H 1.08998 * 109.47062 * 60.33564 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0063 5 6 4.7201 1.8395 -0.0134 6 8 5.8945 1.5228 -0.0189 7 7 4.3733 3.1419 -0.0137 8 16 5.5461 4.3110 -0.0211 9 8 4.8222 5.5335 0.0063 10 8 6.4102 3.9472 1.0467 11 6 6.3832 4.1023 -1.6167 12 6 7.5016 5.1385 -1.7453 13 6 8.1966 4.9656 -3.0712 14 1 7.8733 4.1935 -3.7538 15 6 9.2459 5.7923 -3.4125 16 7 9.6400 6.7320 -2.5811 17 14 10.1079 5.5774 -5.0557 18 1 9.1294 5.7668 -6.1565 19 1 11.1934 6.5832 -5.1805 20 1 10.6860 4.2120 -5.1367 21 6 3.9477 -0.5327 -0.0001 22 6 5.3335 -1.1250 -0.0001 23 16 2.5065 -1.4427 -0.0001 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.8615 2.0940 -0.0004 28 1 3.4367 3.3943 -0.0097 29 1 6.8074 3.1000 -1.6761 30 1 5.6649 4.2414 -2.4248 31 1 7.0770 6.1407 -1.6860 32 1 8.2199 4.9999 -0.9373 33 1 10.3779 7.3138 -2.8214 34 1 5.2636 -2.2128 -0.0006 35 1 5.8696 -0.7950 -0.8899 36 1 5.8694 -0.7957 0.8900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776123620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:16 Heat of formation + Delta-G solvation = -123.101210 kcal Electronic energy + Delta-G solvation = -21884.657304 eV Core-core repulsion = 18393.097054 eV Total energy + Delta-G solvation = -3491.560250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44708 -38.52981 -38.12721 -37.26695 -35.98031 -35.70736 -34.01630 -33.19815 -30.32587 -27.68546 -26.81338 -25.11457 -23.63956 -22.54154 -20.80193 -20.53512 -19.35539 -18.54175 -18.44960 -17.47929 -17.38757 -16.71688 -16.55096 -16.36952 -16.05369 -15.26545 -14.92584 -14.86384 -14.49452 -14.25342 -14.13900 -13.87588 -13.82692 -13.74301 -13.40959 -13.29673 -12.96742 -12.92436 -12.86393 -12.62227 -12.54836 -12.34531 -12.25856 -12.04769 -11.91231 -11.77130 -11.33869 -11.09044 -10.65809 -9.61046 -9.47908 -8.28102 -6.42529 -1.04663 -0.37538 0.43807 0.72039 0.84909 1.39498 1.39990 1.43660 1.51858 1.93222 2.36351 2.54616 3.02420 3.05304 3.32935 3.62013 3.78087 3.96926 4.00726 4.09208 4.17676 4.52517 4.61377 4.64090 4.66262 4.80116 4.83078 5.02737 5.15775 5.18178 5.20294 5.22008 5.38185 5.64502 5.65890 6.02387 6.39471 6.69578 7.27335 8.84224 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.003327 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.167151 B = 8413.872906 C = 9009.313742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.201 4.201 3 C -0.121 4.121 4 C -0.201 4.201 5 C 0.597 3.403 6 O -0.525 6.525 7 N -1.034 6.034 8 S 2.602 3.398 9 O -0.968 6.968 10 O -0.976 6.976 11 C -0.577 4.577 12 C 0.023 3.977 13 C -0.543 4.543 14 H 0.074 0.926 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.976 3.024 18 H -0.260 1.260 19 H -0.281 1.281 20 H -0.266 1.266 21 C -0.152 4.152 22 C -0.089 4.089 23 S 0.245 5.755 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.171 0.829 28 H 0.446 0.554 29 H 0.134 0.866 30 H 0.151 0.849 31 H 0.016 0.984 32 H 0.006 0.994 33 H 0.269 0.731 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.142 -18.759 3.624 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.318 4.318 3 C -0.148 4.148 4 C -0.221 4.221 5 C 0.386 3.614 6 O -0.401 6.401 7 N -0.800 5.800 8 S 2.701 3.299 9 O -0.959 6.959 10 O -0.966 6.966 11 C -0.710 4.710 12 C -0.016 4.016 13 C -0.582 4.582 14 H 0.092 0.908 15 C -0.201 4.201 16 N -0.572 5.572 17 Si 0.799 3.201 18 H -0.185 1.185 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.273 4.273 22 C -0.147 4.147 23 S 0.512 5.488 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.189 0.811 28 H 0.286 0.714 29 H 0.153 0.847 30 H 0.169 0.831 31 H 0.034 0.966 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.403 -19.785 4.402 29.477 hybrid contribution 0.956 1.882 -0.994 2.333 sum -20.446 -17.903 3.409 27.389 Atomic orbital electron populations 1.20499 0.84965 1.04622 1.04127 1.24739 1.02025 0.95652 1.09369 1.21264 0.89272 1.01300 1.03002 1.19928 0.93805 0.92072 1.16254 1.17997 0.88668 0.81940 0.72810 1.90964 1.19804 1.81696 1.47629 1.54728 1.26068 1.18547 1.80704 1.05346 0.73966 0.72662 0.77964 1.93561 1.71505 1.42804 1.88016 1.93544 1.67348 1.82793 1.52958 1.30229 1.11393 1.09983 1.19388 1.18830 0.91786 0.92283 0.98664 1.21442 1.16657 1.17671 1.02405 0.90825 1.26121 0.97665 0.94479 1.01817 1.70087 1.28497 1.20244 1.38347 0.85336 0.78035 0.78272 0.78442 1.18489 1.20669 1.19062 1.24884 1.03802 0.97093 1.01500 1.20512 0.89328 1.00993 1.03847 1.82865 0.90543 1.07105 1.68284 0.89374 0.89964 0.89124 0.81150 0.71419 0.84730 0.83126 0.96563 0.97613 0.92241 0.88818 0.90415 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.35 71.24 0.74 0.24 16 2 C -0.20 -2.49 6.44 24.51 0.16 -2.33 16 3 C -0.12 -1.90 9.75 22.67 0.22 -1.68 16 4 C -0.20 -4.57 5.98 -19.87 -0.12 -4.69 16 5 C 0.60 17.66 7.53 86.60 0.65 18.31 16 6 O -0.52 -19.35 12.74 12.21 0.16 -19.20 16 7 N -1.03 -28.16 5.58 -176.04 -0.98 -29.14 16 8 S 2.60 99.22 5.11 -56.49 -0.29 98.94 16 9 O -0.97 -39.23 18.08 -127.65 -2.31 -41.53 16 10 O -0.98 -45.31 17.04 -120.72 -2.06 -47.37 16 11 C -0.58 -23.82 5.82 71.98 0.42 -23.40 16 12 C 0.02 1.28 4.98 29.85 0.15 1.42 16 13 C -0.54 -31.14 9.11 25.60 0.23 -30.90 16 14 H 0.07 3.93 7.74 -2.91 -0.02 3.90 16 15 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 16 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 17 Si 0.98 44.15 29.54 68.60 2.03 46.18 16 18 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 C -0.15 -3.09 6.34 25.17 0.16 -2.93 16 22 C -0.09 -1.82 8.77 71.24 0.62 -1.20 16 23 S 0.25 3.16 22.93 -56.49 -1.30 1.86 16 24 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.17 1.76 7.10 -2.91 -0.02 1.74 16 28 H 0.45 8.11 7.33 -96.74 -0.71 7.40 16 29 H 0.13 5.49 7.19 -2.39 -0.02 5.47 16 30 H 0.15 5.21 8.14 -2.39 -0.02 5.19 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 34 H 0.09 1.31 8.12 -2.39 -0.02 1.30 16 35 H 0.08 1.82 7.76 -2.39 -0.02 1.80 16 36 H 0.07 1.79 7.80 -2.39 -0.02 1.77 16 Total: -1.00 -81.48 336.35 -0.36 -81.84 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.41 Total: 12.56 kcal Atomic # 6 Polarization: -50.52 SS G_CDS: 3.70 Total: -46.82 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -0.70 Total: -86.46 kcal Atomic # 8 Polarization: -103.89 SS G_CDS: -4.21 Total: -108.10 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Atomic # 16 Polarization: 102.38 SS G_CDS: -1.58 Total: 100.80 kcal Total: -81.48 -0.36 -81.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776123620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.262 kcal (2) G-P(sol) polarization free energy of solvation -81.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds