Wall clock time and date at job start Tue Mar 31 2020 12:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37838 * 119.94149 * 2 1 4 4 C 1.39683 * 119.87615 * 180.27100 * 3 2 1 5 5 C 1.47596 * 120.12457 * 179.76130 * 4 3 2 6 6 O 1.21485 * 120.00171 * 179.97438 * 5 4 3 7 7 O 1.34732 * 119.99899 * 359.97438 * 5 4 3 8 8 C 1.39725 * 119.75295 * 359.74244 * 4 3 2 9 9 C 1.37798 * 119.87393 * 359.97438 * 8 4 3 10 10 S 1.76201 * 119.93582 * 179.97438 * 9 8 4 11 11 O 1.42108 * 106.40041 * 228.56663 * 10 9 8 12 12 O 1.42098 * 106.40463 * 1.48412 * 10 9 8 13 13 N 1.65595 * 107.21606 * 115.02570 * 10 9 8 14 14 C 1.46503 * 119.99990 * 65.00242 * 13 10 9 15 15 C 1.50703 * 109.46963 * 165.00014 * 14 13 10 16 16 H 1.08005 * 120.00049 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00042 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99628 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00196 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47326 * 59.99795 * 19 17 15 21 21 H 1.48502 * 109.47234 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47098 * 299.99728 * 19 17 15 23 23 C 1.38649 * 119.93750 * 179.75624 * 2 1 3 24 24 F 1.35104 * 119.87326 * 0.02562 * 23 2 1 25 25 H 1.08991 * 109.47648 * 270.24369 * 1 2 3 26 26 H 1.09006 * 109.46787 * 30.24445 * 1 2 3 27 27 H 1.09003 * 109.47091 * 150.23956 * 1 2 3 28 28 H 1.08002 * 120.06402 * 0.03071 * 3 2 1 29 29 H 0.96704 * 117.00005 * 180.02562 * 7 5 4 30 30 H 1.08007 * 120.06271 * 179.97438 * 8 4 3 31 31 H 0.96995 * 120.00068 * 244.99379 * 13 10 9 32 32 H 1.08996 * 109.46838 * 284.99206 * 14 13 10 33 33 H 1.08997 * 109.46984 * 44.99709 * 14 13 10 34 34 H 0.97001 * 119.99541 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1944 0.0000 4 6 3.5918 1.1928 -0.0057 5 6 4.3340 2.4686 -0.0111 6 8 5.5488 2.4646 -0.0156 7 8 3.6641 3.6376 -0.0110 8 6 4.2838 -0.0210 -0.0060 9 6 3.5857 -1.2091 0.0000 10 16 4.4568 -2.7407 -0.0010 11 8 3.8659 -3.5376 -1.0185 12 8 5.8398 -2.4159 0.0268 13 7 4.1244 -3.4945 1.4355 14 6 2.7585 -3.9317 1.7344 15 6 2.7813 -4.8926 2.8952 16 1 3.7196 -5.1519 3.3631 17 6 1.6045 -5.4406 3.3599 18 7 0.4620 -5.1243 2.7903 19 14 1.6329 -6.6320 4.7981 20 1 2.2090 -5.9571 5.9888 21 1 0.2482 -7.0742 5.1021 22 1 2.4640 -7.8117 4.4474 23 6 2.1989 -1.2015 0.0051 24 9 1.5195 -2.3693 0.0096 25 1 -0.3634 0.0044 1.0275 26 1 -0.3633 0.8878 -0.5177 27 1 -0.3633 -0.8922 -0.5101 28 1 1.6550 2.1298 0.0005 29 1 4.1935 4.4469 -0.0150 30 1 5.3638 -0.0281 -0.0108 31 1 4.8341 -3.6466 2.0789 32 1 2.1480 -3.0661 1.9914 33 1 2.3363 -4.4277 0.8604 34 1 -0.3660 -5.5095 3.1174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781958640.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:09 Heat of formation + Delta-G solvation = -185.749903 kcal Electronic energy + Delta-G solvation = -24676.835549 eV Core-core repulsion = 20616.345471 eV Total energy + Delta-G solvation = -4060.490078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.16137 -40.66632 -38.88004 -36.80933 -36.37255 -35.46781 -34.70305 -33.25661 -32.20137 -31.49543 -27.31711 -26.78673 -24.85909 -23.57220 -22.55800 -21.03205 -19.20524 -18.37280 -18.22339 -17.56697 -17.25378 -16.72893 -16.23885 -15.92795 -15.82828 -15.74208 -15.21686 -14.59817 -14.09030 -13.96692 -13.59697 -13.54350 -13.43158 -13.19063 -12.60819 -12.39841 -12.28606 -12.08035 -11.94833 -11.88954 -11.80584 -11.70550 -11.59549 -11.00063 -10.94662 -10.80697 -10.70126 -10.14496 -9.67197 -9.44592 -8.99174 -8.92739 -8.28534 -6.19145 -4.24541 0.18767 0.59418 0.82313 2.08456 2.66342 3.13689 3.25627 3.30171 3.32282 3.54555 3.83226 4.01852 4.27196 4.32822 4.51657 4.63837 4.74657 4.99937 5.16914 5.19910 5.32307 5.51584 5.52212 5.64351 5.73017 5.83655 5.95646 6.15175 6.35341 6.40845 7.21829 7.30482 7.58391 7.73103 7.77519 8.13438 8.78913 9.40291 10.90653 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.004460 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.196887 B = 6276.160691 C = 6930.604537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.152 4.152 3 C 0.011 3.989 4 C -0.167 4.167 5 C 0.534 3.466 6 O -0.508 6.508 7 O -0.512 6.512 8 C 0.064 3.936 9 C -0.721 4.721 10 S 2.690 3.310 11 O -0.947 6.947 12 O -0.969 6.969 13 N -1.098 6.098 14 C 0.243 3.757 15 C -0.533 4.533 16 H 0.066 0.934 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.241 3.759 24 F -0.089 7.089 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.154 0.846 29 H 0.416 0.584 30 H 0.166 0.834 31 H 0.414 0.586 32 H 0.022 0.978 33 H 0.045 0.955 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 15.757 -5.147 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.153 4.153 3 C -0.007 4.007 4 C -0.169 4.169 5 C 0.378 3.622 6 O -0.397 6.397 7 O -0.325 6.325 8 C 0.045 3.955 9 C -0.804 4.804 10 S 2.774 3.226 11 O -0.937 6.937 12 O -0.959 6.959 13 N -0.862 5.862 14 C 0.120 3.880 15 C -0.572 4.572 16 H 0.084 0.916 17 C -0.140 4.140 18 N -0.525 5.525 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.220 3.780 24 F -0.067 7.067 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.171 0.829 29 H 0.275 0.725 30 H 0.183 0.817 31 H 0.249 0.751 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.940 15.075 -5.956 16.236 hybrid contribution -0.072 0.237 1.411 1.432 sum 0.868 15.312 -4.545 15.996 Atomic orbital electron populations 1.20789 0.88493 1.03998 1.03865 1.20048 0.98182 0.91262 1.05848 1.21429 0.92450 0.98131 0.88738 1.19031 0.93692 0.90611 1.13556 1.20583 0.85471 0.83975 0.72192 1.90930 1.14788 1.87973 1.46026 1.84535 1.45083 1.16875 1.85977 1.20882 1.01322 0.88359 0.84912 1.31420 1.04277 1.23289 1.21429 1.02135 0.72962 0.73158 0.74350 1.93615 1.78609 1.65350 1.56100 1.93547 1.30423 1.84809 1.87150 1.55473 1.20487 1.72629 1.37564 1.19318 0.75088 0.95416 0.98162 1.21160 0.93768 1.26849 1.15464 0.91607 1.24958 0.95203 0.96652 0.97230 1.69941 0.97996 1.43545 1.41009 0.86478 0.77197 0.81151 0.82120 1.20117 1.21096 1.19979 1.17327 0.88198 0.82473 0.89981 1.91789 1.79389 1.44350 1.91160 0.89893 0.90590 0.90195 0.82860 0.72506 0.81687 0.75138 0.96023 0.93743 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.83 36.01 0.35 -0.87 16 2 C -0.15 -1.99 5.88 -104.62 -0.62 -2.60 16 3 C 0.01 0.12 9.26 -39.19 -0.36 -0.24 16 4 C -0.17 -2.11 5.87 -104.98 -0.62 -2.73 16 5 C 0.53 6.18 8.27 34.55 0.29 6.46 16 6 O -0.51 -7.32 17.13 -19.25 -0.33 -7.65 16 7 O -0.51 -3.91 12.68 -40.58 -0.51 -4.43 16 8 C 0.06 0.95 9.09 -39.19 -0.36 0.59 16 9 C -0.72 -12.02 5.89 -39.58 -0.23 -12.26 16 10 S 2.69 50.88 5.48 -107.50 -0.59 50.29 16 11 O -0.95 -20.65 16.89 -57.17 -0.97 -21.61 16 12 O -0.97 -18.61 16.96 -57.17 -0.97 -19.58 16 13 N -1.10 -22.24 5.99 -11.65 -0.07 -22.31 16 14 C 0.24 5.94 4.31 -5.19 -0.02 5.92 16 15 C -0.53 -14.11 9.27 -34.44 -0.32 -14.43 16 16 H 0.07 1.66 7.65 -52.48 -0.40 1.26 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.24 4.01 6.75 -39.27 -0.27 3.75 16 24 F -0.09 -1.74 12.10 2.25 0.03 -1.71 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.08 0.92 7.63 -51.93 -0.40 0.52 16 28 H 0.15 1.20 7.61 -52.49 -0.40 0.80 16 29 H 0.42 1.27 9.11 45.56 0.42 1.68 16 30 H 0.17 2.38 6.91 -52.48 -0.36 2.02 16 31 H 0.41 7.55 8.54 -34.46 -0.29 7.25 16 32 H 0.02 0.54 6.74 -51.93 -0.35 0.19 16 33 H 0.04 1.19 7.24 -51.93 -0.38 0.81 16 34 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -34.02 317.20 -7.31 -41.33 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -2.14 Total: 4.25 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -2.25 Total: -14.80 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.67 Total: -46.39 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -2.78 Total: -53.27 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.03 Total: -1.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 50.88 SS G_CDS: -0.59 Total: 50.29 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.02 -7.31 -41.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781958640.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.421 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds