Wall clock time and date at job start Tue Mar 31 2020 12:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86803 * 119.99969 * 2 1 4 4 H 1.48498 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46990 * 300.00444 * 3 2 1 6 6 H 1.48496 * 109.47061 * 60.00305 * 3 2 1 7 7 C 1.40240 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00683 * 163.05364 * 7 2 1 9 9 C 1.41100 * 119.99783 * 343.04498 * 7 2 1 10 10 C 1.40896 * 120.09821 * 334.53724 * 9 7 2 11 11 C 1.36299 * 119.89674 * 180.27322 * 10 9 7 12 12 C 1.40074 * 120.09951 * 359.49880 * 11 10 9 13 13 C 1.47506 * 119.89786 * 180.25498 * 12 11 10 14 14 O 1.21512 * 119.99734 * 180.24394 * 13 12 11 15 15 O 1.34770 * 120.00232 * 0.24949 * 13 12 11 16 16 C 1.45202 * 116.99926 * 179.97438 * 15 13 12 17 17 C 1.50708 * 109.46937 * 179.97438 * 16 15 13 18 18 O 1.21346 * 120.00079 * 0.02562 * 17 16 15 19 19 C 1.46378 * 119.99558 * 180.02562 * 17 16 15 20 20 N 1.30828 * 125.54303 * 359.69143 * 19 17 16 21 21 C 1.30465 * 115.90484 * 179.82092 * 20 19 17 22 22 C 1.34527 * 115.78544 * 0.47628 * 21 20 19 23 23 S 1.71066 * 109.08262 * 359.74765 * 22 21 20 24 24 C 1.40065 * 120.19545 * 0.50374 * 12 11 10 25 25 C 1.36294 * 120.10635 * 359.75119 * 24 12 11 26 26 H 0.97000 * 119.99891 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.05034 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.95169 * 179.73203 * 11 10 9 29 29 H 1.08993 * 109.47597 * 299.99655 * 16 15 13 30 30 H 1.09002 * 109.47017 * 60.00413 * 16 15 13 31 31 H 1.08001 * 122.11015 * 180.22819 * 21 20 19 32 32 H 1.07995 * 125.45941 * 179.72014 * 22 21 20 33 33 H 1.08004 * 119.94481 * 179.73234 * 24 12 11 34 34 H 1.07995 * 120.05413 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7003 1.3464 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0076 -1.2145 -0.0005 8 1 3.0524 -1.2348 -0.2731 9 6 1.3481 -2.4101 0.3553 10 6 0.2177 -2.3703 1.1955 11 6 -0.4129 -3.5282 1.5411 12 6 0.0549 -4.7553 1.0539 13 6 -0.6343 -6.0052 1.4262 14 8 -0.2275 -7.0711 1.0081 15 8 -1.7154 -5.9649 2.2300 16 6 -2.3433 -7.2333 2.5543 17 6 -3.5262 -6.9921 3.4564 18 8 -3.8123 -5.8618 3.7926 19 6 -4.3300 -8.1214 3.9269 20 7 -4.1237 -9.3784 3.6285 21 6 -4.9558 -10.2334 4.1563 22 6 -5.9227 -9.7079 4.9300 23 16 -5.7366 -8.0081 4.9803 24 6 1.1782 -4.7995 0.2184 25 6 1.8182 -3.6472 -0.1283 26 1 -0.4850 0.8401 0.0004 27 1 -0.1455 -1.4243 1.5690 28 1 -1.2767 -3.4992 2.1886 29 1 -2.6782 -7.7180 1.6372 30 1 -1.6240 -7.8753 3.0628 31 1 -4.8760 -11.2959 3.9798 32 1 -6.6932 -10.2690 5.4377 33 1 1.5380 -5.7483 -0.1515 34 1 2.6844 -3.6823 -0.7722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784403717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:18 Heat of formation + Delta-G solvation = -54.505060 kcal Electronic energy + Delta-G solvation = -21930.498668 eV Core-core repulsion = 18306.469018 eV Total energy + Delta-G solvation = -3624.029649 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42868 -39.69709 -38.85719 -37.40081 -35.57003 -33.93804 -31.57846 -30.42273 -29.49842 -28.86225 -26.62317 -25.78291 -22.72187 -22.01752 -20.94971 -20.01858 -19.67116 -18.52708 -17.55145 -17.11010 -16.52214 -16.34255 -16.22010 -15.47252 -15.14816 -15.03889 -14.65482 -14.01178 -13.95119 -13.71827 -13.37520 -13.00130 -12.58753 -12.47820 -12.09514 -11.95393 -11.83007 -11.42306 -11.30622 -10.98311 -10.72334 -10.67341 -10.32524 -10.15151 -10.11713 -10.02815 -9.61340 -9.45399 -9.37842 -9.37222 -7.74193 -7.62825 -7.08111 -4.67182 -0.30995 0.72637 1.25743 1.64223 2.04030 2.62222 2.86028 2.91005 2.93772 2.99294 3.04577 3.61518 3.67458 3.71813 4.30612 4.47339 4.64278 4.82843 4.89871 5.23631 5.31873 5.52559 5.59142 5.88339 6.22895 6.27662 6.75099 6.81885 6.85949 6.96344 6.99909 7.09616 7.24054 7.43178 7.67037 7.78952 7.84966 8.01513 8.36761 8.57314 8.68169 8.70485 9.83129 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.002385 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.061177 B =11737.396775 C =12660.432234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.132 3.868 10 C -0.184 4.184 11 C -0.041 4.041 12 C -0.274 4.274 13 C 0.516 3.484 14 O -0.549 6.549 15 O -0.345 6.345 16 C 0.044 3.956 17 C 0.436 3.564 18 O -0.409 6.409 19 C -0.047 4.047 20 N -0.408 5.408 21 C 0.029 3.971 22 C -0.275 4.275 23 S 0.246 5.754 24 C -0.017 4.017 25 C -0.239 4.239 26 H 0.288 0.712 27 H 0.122 0.878 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.181 0.819 32 H 0.186 0.814 33 H 0.103 0.897 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.136 -12.012 8.917 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.151 4.151 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.203 4.203 11 C -0.060 4.060 12 C -0.276 4.276 13 C 0.369 3.631 14 O -0.443 6.443 15 O -0.263 6.263 16 C -0.033 4.033 17 C 0.306 3.694 18 O -0.277 6.277 19 C -0.318 4.318 20 N -0.127 5.127 21 C -0.129 4.129 22 C -0.416 4.416 23 S 0.502 5.498 24 C -0.036 4.036 25 C -0.258 4.258 26 H 0.100 0.900 27 H 0.140 0.860 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.198 0.802 32 H 0.203 0.797 33 H 0.121 0.879 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.523 -10.786 9.134 18.236 hybrid contribution 0.151 -0.739 -0.188 0.778 sum -11.371 -11.526 8.947 18.498 Atomic orbital electron populations 1.69747 1.07977 1.30265 1.30598 1.26166 0.94870 1.02092 0.91938 0.86125 0.81051 0.79982 0.78956 1.17984 1.19584 1.19270 1.19958 0.98169 0.91034 1.36894 0.89425 1.17873 0.90324 0.92227 0.86765 1.21018 0.99973 0.97064 1.02271 1.20699 0.97140 0.91892 0.96302 1.18168 1.04351 0.89076 1.16013 1.21655 0.76696 0.90422 0.74349 1.90713 1.66180 1.32393 1.55019 1.86662 1.43359 1.32199 1.64060 1.22724 0.93729 0.86810 1.00019 1.21168 0.83381 0.85862 0.78961 1.90677 1.65675 1.23315 1.48079 1.28113 1.02020 0.95869 1.05805 1.66852 1.25821 0.99736 1.20262 1.21854 0.92022 1.01562 0.97506 1.27093 1.06607 1.00282 1.07591 1.84157 1.23169 1.01383 1.41104 1.20344 0.92425 0.97410 0.93389 1.20685 1.04640 0.92504 1.07977 0.90021 0.86014 0.87775 0.87452 0.87473 0.80185 0.79672 0.87870 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.31 10.95 55.56 0.61 -17.70 16 2 C 0.07 1.66 5.15 -17.31 -0.09 1.57 16 3 Si 0.92 17.08 29.59 -169.99 -5.03 12.05 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.43 -10.65 9.05 -37.74 -0.34 -11.00 16 8 H 0.09 2.04 7.91 -52.49 -0.41 1.62 16 9 C 0.13 3.35 5.57 -106.80 -0.59 2.75 16 10 C -0.18 -4.64 8.63 -39.27 -0.34 -4.98 16 11 C -0.04 -0.99 9.55 -39.59 -0.38 -1.37 16 12 C -0.27 -6.51 5.89 -104.75 -0.62 -7.13 16 13 C 0.52 11.52 7.89 34.51 0.27 11.79 16 14 O -0.55 -12.69 16.11 -19.27 -0.31 -13.01 16 15 O -0.35 -6.91 8.98 -47.36 -0.43 -7.34 16 16 C 0.04 0.70 5.69 36.01 0.20 0.90 16 17 C 0.44 6.28 7.20 -31.03 -0.22 6.06 16 18 O -0.41 -6.90 17.08 -14.15 -0.24 -7.14 16 19 C -0.05 -0.55 7.37 -14.71 -0.11 -0.66 16 20 N -0.41 -4.58 10.40 -11.69 -0.12 -4.70 16 21 C 0.03 0.23 11.25 -19.44 -0.22 0.01 16 22 C -0.27 -1.77 11.10 29.42 0.33 -1.45 16 23 S 0.25 2.11 23.01 -107.50 -2.47 -0.37 16 24 C -0.02 -0.40 9.52 -39.60 -0.38 -0.78 16 25 C -0.24 -5.72 9.73 -39.27 -0.38 -6.10 16 26 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 27 H 0.12 3.10 6.18 -52.49 -0.32 2.78 16 28 H 0.10 2.35 7.59 -52.49 -0.40 1.95 16 29 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.18 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.19 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.10 2.28 7.63 -52.48 -0.40 1.87 16 34 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -29.52 329.07 -8.69 -38.21 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -2.79 Total: 5.41 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.87 Total: -10.37 kcal Atomic # 7 Polarization: -22.89 SS G_CDS: 0.49 Total: -22.40 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.98 Total: -27.49 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.47 Total: -0.37 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.52 -8.69 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784403717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.299 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds