Wall clock time and date at job start Tue Mar 31 2020 12:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86803 * 119.99969 * 2 1 4 4 H 1.48498 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46990 * 300.00444 * 3 2 1 6 6 H 1.48496 * 109.47061 * 60.00305 * 3 2 1 7 7 C 1.40240 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00683 * 163.05364 * 7 2 1 9 9 C 1.41100 * 119.99783 * 343.04498 * 7 2 1 10 10 C 1.40896 * 120.09821 * 334.53724 * 9 7 2 11 11 C 1.36299 * 119.89674 * 180.27322 * 10 9 7 12 12 C 1.40074 * 120.09951 * 359.49880 * 11 10 9 13 13 C 1.47506 * 119.89786 * 180.25498 * 12 11 10 14 14 O 1.21512 * 119.99734 * 180.24394 * 13 12 11 15 15 O 1.34770 * 120.00232 * 0.24949 * 13 12 11 16 16 C 1.45202 * 116.99926 * 179.97438 * 15 13 12 17 17 C 1.50708 * 109.46937 * 179.97438 * 16 15 13 18 18 O 1.21346 * 120.00079 * 0.02562 * 17 16 15 19 19 C 1.46378 * 119.99558 * 180.02562 * 17 16 15 20 20 N 1.30828 * 125.54303 * 359.69143 * 19 17 16 21 21 C 1.30465 * 115.90484 * 179.82092 * 20 19 17 22 22 C 1.34527 * 115.78544 * 0.47628 * 21 20 19 23 23 S 1.71066 * 109.08262 * 359.74765 * 22 21 20 24 24 C 1.40065 * 120.19545 * 0.50374 * 12 11 10 25 25 C 1.36294 * 120.10635 * 359.75119 * 24 12 11 26 26 H 0.97000 * 119.99891 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.05034 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.95169 * 179.73203 * 11 10 9 29 29 H 1.08993 * 109.47597 * 299.99655 * 16 15 13 30 30 H 1.09002 * 109.47017 * 60.00413 * 16 15 13 31 31 H 1.08001 * 122.11015 * 180.22819 * 21 20 19 32 32 H 1.07995 * 125.45941 * 179.72014 * 22 21 20 33 33 H 1.08004 * 119.94481 * 179.73234 * 24 12 11 34 34 H 1.07995 * 120.05413 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7003 1.3464 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0076 -1.2145 -0.0005 8 1 3.0524 -1.2348 -0.2731 9 6 1.3481 -2.4101 0.3553 10 6 0.2177 -2.3703 1.1955 11 6 -0.4129 -3.5282 1.5411 12 6 0.0549 -4.7553 1.0539 13 6 -0.6343 -6.0052 1.4262 14 8 -0.2275 -7.0711 1.0081 15 8 -1.7154 -5.9649 2.2300 16 6 -2.3433 -7.2333 2.5543 17 6 -3.5262 -6.9921 3.4564 18 8 -3.8123 -5.8618 3.7926 19 6 -4.3300 -8.1214 3.9269 20 7 -4.1237 -9.3784 3.6285 21 6 -4.9558 -10.2334 4.1563 22 6 -5.9227 -9.7079 4.9300 23 16 -5.7366 -8.0081 4.9803 24 6 1.1782 -4.7995 0.2184 25 6 1.8182 -3.6472 -0.1283 26 1 -0.4850 0.8401 0.0004 27 1 -0.1455 -1.4243 1.5690 28 1 -1.2767 -3.4992 2.1886 29 1 -2.6782 -7.7180 1.6372 30 1 -1.6240 -7.8753 3.0628 31 1 -4.8760 -11.2959 3.9798 32 1 -6.6932 -10.2690 5.4377 33 1 1.5380 -5.7483 -0.1515 34 1 2.6844 -3.6823 -0.7722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784403717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:17 Heat of formation + Delta-G solvation = -69.755133 kcal Electronic energy + Delta-G solvation = -21931.159961 eV Core-core repulsion = 18306.469018 eV Total energy + Delta-G solvation = -3624.690942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62521 -40.92694 -40.03588 -39.20966 -37.24351 -35.75168 -32.57039 -32.10527 -31.38571 -30.00833 -28.02303 -27.06500 -24.25911 -23.11130 -22.81882 -21.73440 -20.55800 -19.44928 -19.39993 -18.57026 -17.99986 -17.71817 -17.35145 -17.13458 -16.29621 -16.13344 -15.75963 -15.66514 -15.17488 -15.02793 -14.75228 -14.37602 -14.13245 -14.04303 -13.89652 -13.53271 -13.24832 -12.87370 -12.67937 -12.54987 -12.40805 -11.86455 -11.82888 -11.68893 -11.44207 -11.31060 -11.15740 -10.88922 -10.79074 -10.06338 -9.64049 -9.53474 -8.84536 -6.55818 -1.09582 -0.00991 0.20908 0.61748 0.73954 1.13302 1.35527 1.41369 1.57164 1.57441 1.83543 1.86045 2.15377 2.62427 2.67350 3.32295 3.61600 3.88371 3.99448 4.08186 4.22023 4.23865 4.32586 4.36663 4.42209 4.92629 4.97792 5.02364 5.10895 5.20006 5.28260 5.55817 5.79298 5.86471 5.91840 5.96136 6.14158 6.46994 6.48991 6.69723 6.81316 6.93448 8.10356 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.027825 B = 0.002385 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.061177 B =11737.396775 C =12660.432234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.252 1.252 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.095 0.905 9 C 0.105 3.895 10 C -0.203 4.203 11 C -0.041 4.041 12 C -0.291 4.291 13 C 0.522 3.478 14 O -0.560 6.560 15 O -0.354 6.354 16 C 0.037 3.963 17 C 0.446 3.554 18 O -0.447 6.447 19 C -0.096 4.096 20 N -0.422 5.422 21 C 0.010 3.990 22 C -0.238 4.238 23 S 0.274 5.726 24 C -0.020 4.020 25 C -0.248 4.248 26 H 0.299 0.701 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.210 0.790 32 H 0.228 0.772 33 H 0.116 0.884 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 -12.884 9.740 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.187 4.187 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.482 4.482 8 H 0.113 0.887 9 C 0.101 3.899 10 C -0.222 4.222 11 C -0.060 4.060 12 C -0.293 4.293 13 C 0.374 3.626 14 O -0.455 6.455 15 O -0.271 6.271 16 C -0.039 4.039 17 C 0.320 3.680 18 O -0.319 6.319 19 C -0.364 4.364 20 N -0.142 5.142 21 C -0.148 4.148 22 C -0.379 4.379 23 S 0.529 5.471 24 C -0.038 4.038 25 C -0.267 4.267 26 H 0.111 0.889 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.226 0.774 32 H 0.245 0.755 33 H 0.134 0.866 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.510 -11.682 9.952 19.799 hybrid contribution 0.274 -0.645 -0.365 0.790 sum -12.236 -12.328 9.587 19.840 Atomic orbital electron populations 1.69778 1.09533 1.31952 1.30261 1.27087 0.95563 1.05305 0.90765 0.84984 0.79563 0.75022 0.79233 1.17508 1.18709 1.18650 1.20284 0.98694 0.91753 1.37475 0.88660 1.18219 0.90849 0.93387 0.87399 1.21008 1.00852 0.97024 1.03295 1.20768 0.97158 0.91835 0.96194 1.18405 1.04858 0.89755 1.16287 1.21356 0.77095 0.89681 0.74432 1.90689 1.66713 1.32557 1.55560 1.86615 1.42537 1.34749 1.63205 1.23079 0.94598 0.85142 1.01121 1.21066 0.82751 0.86356 0.77839 1.90656 1.66753 1.24730 1.49756 1.27439 1.04408 0.95223 1.09324 1.66830 1.26927 0.99880 1.20587 1.22346 0.92037 1.02507 0.97865 1.27656 1.05936 0.99179 1.05130 1.84116 1.20802 1.02998 1.39177 1.20518 0.92294 0.97859 0.93167 1.20886 1.05267 0.92244 1.08279 0.88937 0.86954 0.87124 0.86604 0.86470 0.77360 0.75524 0.86585 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.37 10.95 21.87 0.24 -38.13 16 2 C 0.03 1.51 5.15 85.36 0.44 1.95 16 3 Si 0.99 34.32 29.59 68.60 2.03 36.35 16 4 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 5 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 6 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 7 C -0.46 -22.61 9.05 23.46 0.21 -22.40 16 8 H 0.10 4.43 7.91 -2.91 -0.02 4.41 16 9 C 0.10 5.47 5.57 -21.27 -0.12 5.35 16 10 C -0.20 -10.57 8.63 22.47 0.19 -10.38 16 11 C -0.04 -2.02 9.55 22.26 0.21 -1.80 16 12 C -0.29 -14.15 5.89 -19.95 -0.12 -14.27 16 13 C 0.52 23.71 7.89 70.27 0.55 24.27 16 14 O -0.56 -26.07 16.11 19.79 0.32 -25.75 16 15 O -0.35 -14.56 8.98 -50.42 -0.45 -15.02 16 16 C 0.04 1.18 5.69 71.24 0.41 1.59 16 17 C 0.45 13.22 7.20 27.81 0.20 13.42 16 18 O -0.45 -15.68 17.08 15.56 0.27 -15.42 16 19 C -0.10 -2.22 7.37 86.96 0.64 -1.58 16 20 N -0.42 -8.93 10.40 -190.90 -1.99 -10.92 16 21 C 0.01 0.13 11.25 84.05 0.95 1.08 16 22 C -0.24 -2.13 11.10 66.97 0.74 -1.38 16 23 S 0.27 4.16 23.01 -56.49 -1.30 2.86 16 24 C -0.02 -0.94 9.52 22.26 0.21 -0.73 16 25 C -0.25 -12.04 9.73 22.47 0.22 -11.82 16 26 H 0.30 12.83 8.29 -92.71 -0.77 12.06 16 27 H 0.11 5.96 6.18 -2.91 -0.02 5.95 16 28 H 0.11 5.19 7.59 -2.91 -0.02 5.17 16 29 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 30 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.23 0.08 8.06 -2.91 -0.02 0.06 16 33 H 0.12 5.13 7.63 -2.91 -0.02 5.11 16 34 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -65.34 329.07 5.01 -60.32 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 1.16 Total: 22.40 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 4.74 Total: -16.70 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -1.75 Total: -49.04 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: 0.13 Total: -56.18 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.30 Total: 2.86 kcal Total: -65.34 5.01 -60.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784403717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.431 kcal (2) G-P(sol) polarization free energy of solvation -65.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds