Wall clock time and date at job start Tue Mar 31 2020 11:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99936 * 2 1 4 4 H 1.48497 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46903 * 300.00032 * 3 2 1 6 6 H 1.48492 * 109.46968 * 59.99710 * 3 2 1 7 7 C 1.37882 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99884 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47474 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47236 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47253 * 180.02562 * 11 10 9 13 13 C 1.34777 * 117.00167 * 180.02562 * 12 11 10 14 14 O 1.21533 * 119.99911 * 359.97438 * 13 12 11 15 15 C 1.47219 * 119.99911 * 180.27170 * 13 12 11 16 16 C 1.40427 * 120.21749 * 89.44737 * 15 13 12 17 17 N 1.38905 * 120.17594 * 0.02562 * 16 15 13 18 18 C 1.38984 * 119.64404 * 179.72134 * 16 15 13 19 19 Cl 1.73599 * 119.95679 * 180.27278 * 18 16 15 20 20 C 1.38104 * 120.08756 * 0.55335 * 18 16 15 21 21 C 1.38530 * 120.44586 * 359.72102 * 20 18 16 22 22 C 1.37930 * 120.35268 * 0.02562 * 21 20 18 23 23 Cl 1.73593 * 120.04771 * 179.97438 * 22 21 20 24 24 H 0.96994 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47108 * 59.99851 * 9 7 2 26 26 H 1.09010 * 109.46932 * 300.00194 * 9 7 2 27 27 H 1.08997 * 109.46840 * 59.99429 * 10 9 7 28 28 H 1.08996 * 109.46457 * 300.00013 * 10 9 7 29 29 H 1.08998 * 109.47242 * 59.99633 * 11 10 9 30 30 H 1.09010 * 109.47036 * 299.99830 * 11 10 9 31 31 H 0.96997 * 120.00306 * 359.97438 * 17 16 15 32 32 H 0.97005 * 119.99320 * 180.02562 * 17 16 15 33 33 H 1.07997 * 119.77919 * 179.69540 * 20 18 16 34 34 H 1.08003 * 119.82468 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 8 2.4240 -6.0907 -0.0006 13 6 1.9088 -7.3361 -0.0016 14 8 0.7040 -7.4954 -0.0024 15 6 2.8057 -8.5036 0.0050 16 6 3.2389 -9.0552 1.2216 17 7 2.8231 -8.5024 2.4262 18 6 4.0808 -10.1610 1.2140 19 17 4.6156 -10.8537 2.7132 20 6 4.4972 -10.7058 0.0152 21 6 4.0767 -10.1612 -1.1871 22 6 3.2370 -9.0670 -1.2009 23 17 2.7155 -8.3905 -2.7121 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8898 27 1 2.8721 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8905 29 1 0.8540 -5.0446 -0.8913 30 1 0.8534 -5.0451 0.8887 31 1 2.2322 -7.7332 2.4286 32 1 3.1242 -8.8854 3.2651 33 1 5.1554 -11.5621 0.0151 34 1 4.4089 -10.5951 -2.1187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785615427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:11 Heat of formation + Delta-G solvation = -91.480703 kcal Electronic energy + Delta-G solvation = -20960.620128 eV Core-core repulsion = 17330.510539 eV Total energy + Delta-G solvation = -3630.109590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82413 -39.35480 -37.22367 -36.69395 -36.41441 -35.11056 -34.01940 -31.89127 -31.28580 -29.31533 -27.21264 -24.90890 -23.15683 -22.86550 -21.07452 -20.37922 -18.36061 -18.02241 -17.58339 -16.98883 -16.21253 -16.07537 -15.42365 -15.25336 -15.06171 -14.56227 -14.45704 -13.90289 -13.47021 -12.86276 -12.81116 -12.58227 -12.21541 -12.11727 -12.00682 -11.86494 -11.48686 -11.35307 -11.00878 -10.91262 -10.74881 -10.68705 -10.48984 -10.45808 -9.76915 -9.55316 -9.22179 -9.15952 -8.41120 -8.17260 -6.05651 -4.08642 0.38122 0.83280 1.53618 1.69958 2.05958 2.68274 3.03468 3.22746 3.28774 3.36372 3.40730 4.21683 4.41550 4.57954 4.60710 4.80933 5.00759 5.15529 5.30507 5.50038 5.52181 5.56493 5.64161 5.92214 5.95737 6.34908 6.49709 6.71044 6.74269 6.94030 7.10202 7.57674 7.68087 7.72369 7.92649 8.33569 8.97814 9.55879 11.05815 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002773 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.593360 B =10094.497974 C =10878.383094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.065 3.935 12 O -0.345 6.345 13 C 0.512 3.488 14 O -0.488 6.488 15 C -0.172 4.172 16 C 0.284 3.716 17 N -0.850 5.850 18 C -0.120 4.120 19 Cl -0.058 7.058 20 C -0.027 4.027 21 C -0.162 4.162 22 C 0.054 3.946 23 Cl -0.040 7.040 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.408 0.592 32 H 0.410 0.590 33 H 0.148 0.852 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.523 -25.096 1.682 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.008 4.008 12 O -0.261 6.261 13 C 0.354 3.646 14 O -0.375 6.375 15 C -0.180 4.180 16 C 0.173 3.827 17 N -0.388 5.388 18 C -0.151 4.151 19 Cl -0.029 7.029 20 C -0.047 4.047 21 C -0.183 4.183 22 C 0.026 3.974 23 Cl -0.010 7.010 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.238 0.762 32 H 0.241 0.759 33 H 0.166 0.834 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.985 -24.957 1.699 26.580 hybrid contribution 0.096 1.166 0.330 1.216 sum 9.081 -23.791 2.029 25.546 Atomic orbital electron populations 1.69970 1.06087 1.26682 1.50601 1.25031 0.94876 0.99381 0.95183 0.86495 0.80118 0.83552 0.77618 1.19642 1.20951 1.20973 1.21204 0.93170 0.90631 1.50914 0.92358 1.19057 0.93810 0.90719 0.97703 1.21774 0.99954 0.90772 1.02112 1.23617 0.91280 0.83507 1.02364 1.86706 1.42321 1.14472 1.82562 1.20617 0.86907 0.83751 0.73357 1.90897 1.15588 1.86974 1.44067 1.18235 1.08435 0.99788 0.91544 1.16981 0.90015 0.89939 0.85768 1.42516 1.54701 1.36473 1.05080 1.20176 1.06793 0.99470 0.88702 1.98362 1.89125 1.83444 1.31955 1.20910 0.96330 0.98164 0.89260 1.20686 1.01330 0.97231 0.99049 1.20690 0.95680 0.94748 0.86254 1.98435 1.89021 1.84228 1.29360 0.92928 0.96173 0.96249 0.92112 0.91989 0.91189 0.91373 0.76208 0.75871 0.83384 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.11 -2.23 5.53 -26.74 -0.15 -2.38 16 11 C 0.07 1.18 5.48 37.15 0.20 1.39 16 12 O -0.34 -5.81 10.23 -40.70 -0.42 -6.22 16 13 C 0.51 8.09 5.19 34.38 0.18 8.27 16 14 O -0.49 -8.78 16.90 -19.29 -0.33 -9.11 16 15 C -0.17 -2.25 5.77 -104.80 -0.60 -2.85 16 16 C 0.28 3.11 6.76 -83.56 -0.57 2.55 16 17 N -0.85 -8.13 8.94 32.57 0.29 -7.84 16 18 C -0.12 -1.08 6.33 -39.35 -0.25 -1.33 16 19 Cl -0.06 -0.44 27.58 -51.86 -1.43 -1.87 16 20 C -0.03 -0.20 9.80 -39.52 -0.39 -0.59 16 21 C -0.16 -1.35 9.80 -39.59 -0.39 -1.74 16 22 C 0.05 0.63 6.35 -39.07 -0.25 0.38 16 23 Cl -0.04 -0.49 28.04 -51.86 -1.45 -1.94 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 31 H 0.41 4.14 7.68 -40.82 -0.31 3.82 16 32 H 0.41 3.07 7.49 -40.82 -0.31 2.76 16 33 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -31.49 332.58 -8.91 -40.40 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -3.54 Total: 0.27 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.76 Total: -9.21 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 1.03 Total: -33.78 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.74 Total: -15.33 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -2.88 Total: -3.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.49 -8.91 -40.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785615427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.079 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds