Wall clock time and date at job start Tue Mar 31 2020 11:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99936 * 2 1 4 4 H 1.48497 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46903 * 300.00032 * 3 2 1 6 6 H 1.48492 * 109.46968 * 59.99710 * 3 2 1 7 7 C 1.37882 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99884 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47474 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47236 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47253 * 180.02562 * 11 10 9 13 13 C 1.34777 * 117.00167 * 180.02562 * 12 11 10 14 14 O 1.21533 * 119.99911 * 359.97438 * 13 12 11 15 15 C 1.47219 * 119.99911 * 180.27170 * 13 12 11 16 16 C 1.40427 * 120.21749 * 89.44737 * 15 13 12 17 17 N 1.38905 * 120.17594 * 0.02562 * 16 15 13 18 18 C 1.38984 * 119.64404 * 179.72134 * 16 15 13 19 19 Cl 1.73599 * 119.95679 * 180.27278 * 18 16 15 20 20 C 1.38104 * 120.08756 * 0.55335 * 18 16 15 21 21 C 1.38530 * 120.44586 * 359.72102 * 20 18 16 22 22 C 1.37930 * 120.35268 * 0.02562 * 21 20 18 23 23 Cl 1.73593 * 120.04771 * 179.97438 * 22 21 20 24 24 H 0.96994 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47108 * 59.99851 * 9 7 2 26 26 H 1.09010 * 109.46932 * 300.00194 * 9 7 2 27 27 H 1.08997 * 109.46840 * 59.99429 * 10 9 7 28 28 H 1.08996 * 109.46457 * 300.00013 * 10 9 7 29 29 H 1.08998 * 109.47242 * 59.99633 * 11 10 9 30 30 H 1.09010 * 109.47036 * 299.99830 * 11 10 9 31 31 H 0.96997 * 120.00306 * 359.97438 * 17 16 15 32 32 H 0.97005 * 119.99320 * 180.02562 * 17 16 15 33 33 H 1.07997 * 119.77919 * 179.69540 * 20 18 16 34 34 H 1.08003 * 119.82468 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 8 2.4240 -6.0907 -0.0006 13 6 1.9088 -7.3361 -0.0016 14 8 0.7040 -7.4954 -0.0024 15 6 2.8057 -8.5036 0.0050 16 6 3.2389 -9.0552 1.2216 17 7 2.8231 -8.5024 2.4262 18 6 4.0808 -10.1610 1.2140 19 17 4.6156 -10.8537 2.7132 20 6 4.4972 -10.7058 0.0152 21 6 4.0767 -10.1612 -1.1871 22 6 3.2370 -9.0670 -1.2009 23 17 2.7155 -8.3905 -2.7121 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8898 27 1 2.8721 -3.6043 0.8894 28 1 2.8720 -3.6042 -0.8905 29 1 0.8540 -5.0446 -0.8913 30 1 0.8534 -5.0451 0.8887 31 1 2.2322 -7.7332 2.4286 32 1 3.1242 -8.8854 3.2651 33 1 5.1554 -11.5621 0.0151 34 1 4.4089 -10.5951 -2.1187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785615427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:11 Heat of formation + Delta-G solvation = -109.384821 kcal Electronic energy + Delta-G solvation = -20961.396509 eV Core-core repulsion = 17330.510539 eV Total energy + Delta-G solvation = -3630.885970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.92964 -40.33479 -38.04044 -37.86713 -37.35042 -35.96402 -35.85271 -33.74070 -32.26415 -30.08249 -29.03752 -26.14032 -24.77337 -23.65927 -22.24212 -22.14388 -19.39942 -18.85299 -18.75108 -18.42175 -17.88210 -17.36664 -16.50707 -16.31660 -16.01658 -15.96398 -15.36887 -15.31515 -14.83723 -14.17404 -13.89401 -13.84922 -13.65641 -13.48906 -13.26049 -12.86752 -12.67169 -12.52997 -12.44408 -12.27964 -12.15739 -12.14025 -11.88156 -11.64010 -11.48706 -11.47023 -11.24255 -10.58880 -10.01166 -8.92161 -8.22872 -6.34191 -0.40847 0.09526 0.69649 0.78503 1.02973 1.40771 1.41103 1.53136 1.56614 2.24995 2.40527 2.47259 3.11206 3.35146 3.63307 3.85849 3.95297 3.99305 4.10607 4.16430 4.36775 4.44175 4.76226 4.77669 4.91167 4.95085 5.03926 5.24696 5.32228 5.47513 5.61977 5.78968 5.92844 6.17736 6.39081 6.44816 6.81660 7.35395 8.89499 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002773 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.593360 B =10094.497974 C =10878.383094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.093 4.093 11 C 0.074 3.926 12 O -0.346 6.346 13 C 0.519 3.481 14 O -0.517 6.517 15 C -0.204 4.204 16 C 0.277 3.723 17 N -0.848 5.848 18 C -0.122 4.122 19 Cl -0.043 7.043 20 C -0.010 4.010 21 C -0.150 4.150 22 C 0.040 3.960 23 Cl -0.057 7.057 24 H 0.265 0.735 25 H -0.004 1.004 26 H -0.001 1.001 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.403 0.597 32 H 0.418 0.582 33 H 0.186 0.814 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.895 -26.526 1.948 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.010 4.010 10 C -0.131 4.131 11 C 0.001 3.999 12 O -0.262 6.262 13 C 0.362 3.638 14 O -0.405 6.405 15 C -0.212 4.212 16 C 0.165 3.835 17 N -0.386 5.386 18 C -0.154 4.154 19 Cl -0.014 7.014 20 C -0.029 4.029 21 C -0.171 4.171 22 C 0.012 3.988 23 Cl -0.027 7.027 24 H 0.073 0.927 25 H 0.015 0.985 26 H 0.018 0.982 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.232 0.768 32 H 0.252 0.748 33 H 0.204 0.796 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 11.380 -26.414 1.979 28.829 hybrid contribution -0.608 1.478 0.295 1.625 sum 10.772 -24.936 2.274 27.258 Atomic orbital electron populations 1.70098 1.07839 1.27876 1.51496 1.25994 0.95782 1.03464 0.94604 0.85355 0.79133 0.78537 0.77774 1.18399 1.20438 1.20319 1.21640 0.93719 0.91860 1.50783 0.91757 1.18927 0.94196 0.92326 0.95560 1.21459 0.98765 0.90272 1.02570 1.23264 0.90978 0.83407 1.02242 1.86691 1.41796 1.14873 1.82839 1.21127 0.87064 0.83713 0.71850 1.90872 1.17063 1.87170 1.45432 1.18179 1.10288 0.99571 0.93168 1.17104 0.90442 0.90609 0.85323 1.42536 1.54483 1.36292 1.05312 1.20355 1.06175 0.98859 0.90002 1.98373 1.88830 1.83022 1.31206 1.21375 0.95261 0.98231 0.88043 1.21056 0.99593 0.95665 1.00745 1.20914 0.96870 0.95941 0.85085 1.98426 1.89376 1.84694 1.30244 0.92665 0.98526 0.98220 0.91280 0.91742 0.91902 0.91057 0.76751 0.74834 0.79634 0.80418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.87 5.53 30.59 0.17 -3.70 16 11 C 0.07 2.77 5.48 71.98 0.39 3.17 16 12 O -0.35 -11.80 10.23 -56.88 -0.58 -12.38 16 13 C 0.52 16.65 5.19 70.18 0.36 17.01 16 14 O -0.52 -19.14 16.90 19.73 0.33 -18.80 16 15 C -0.20 -5.23 5.77 -19.98 -0.12 -5.34 16 16 C 0.28 5.74 6.76 38.73 0.26 6.00 16 17 N -0.85 -15.69 8.94 -50.86 -0.45 -16.15 16 18 C -0.12 -1.89 6.33 22.42 0.14 -1.75 16 19 Cl -0.04 -0.55 27.58 -2.72 -0.08 -0.62 16 20 C -0.01 -0.11 9.80 22.31 0.22 0.11 16 21 C -0.15 -2.06 9.80 22.27 0.22 -1.84 16 22 C 0.04 0.87 6.35 22.60 0.14 1.01 16 23 Cl -0.06 -1.37 28.04 -2.72 -0.08 -1.45 16 24 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 25 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 31 H 0.40 8.23 7.68 -92.71 -0.71 7.52 16 32 H 0.42 5.84 7.49 -92.70 -0.69 5.15 16 33 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -68.69 332.58 3.86 -64.83 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -0.24 Total: 8.67 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 2.64 Total: -13.75 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -0.17 Total: -72.51 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.25 Total: -31.18 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.15 Total: -2.08 kcal Total: -68.69 3.86 -64.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785615427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.550 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds